Wall clock time and date at job start Sun Mar 29 2020 22:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.46873 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 C 1.53006 * 109.47127 * 240.00489 * 2 1 3 13 13 N 1.46899 * 109.47163 * 59.99810 * 12 2 1 14 14 C 1.46896 * 110.99916 * 180.02562 * 13 12 2 15 15 H 1.08999 * 108.94646 * 36.23176 * 14 13 12 16 16 C 1.46276 * 108.96363 * 154.99855 * 14 13 12 17 17 C 1.54207 * 112.07677 * 181.55865 * 16 14 13 18 18 C 1.50417 * 108.76649 * 282.18944 * 17 16 14 19 19 O 1.44181 * 112.77368 * 92.58113 * 18 17 16 20 20 C 1.44191 * 116.92709 * 318.47322 * 19 18 17 21 21 C 1.50413 * 112.77766 * 318.47652 * 20 19 18 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 26 26 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 28 28 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.47050 * 179.97438 * 12 2 1 30 30 H 1.09001 * 109.47002 * 299.99574 * 12 2 1 31 31 H 1.00904 * 110.99872 * 303.95535 * 13 12 2 32 32 H 1.08999 * 108.96692 * 302.22867 * 16 14 13 33 33 H 1.09000 * 108.96285 * 60.89181 * 16 14 13 34 34 H 1.09000 * 109.58833 * 41.97280 * 17 16 14 35 35 H 1.09000 * 109.58847 * 162.40355 * 17 16 14 36 36 H 1.09011 * 108.81824 * 213.42515 * 18 17 16 37 37 H 1.08999 * 108.82350 * 331.83377 * 18 17 16 38 38 H 1.08997 * 108.82208 * 79.32241 * 20 19 18 39 39 H 1.08991 * 108.82316 * 197.62633 * 20 19 18 40 40 H 1.09004 * 109.58990 * 332.78941 * 21 20 19 41 41 H 1.09001 * 109.59033 * 212.36169 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8271 -0.4200 5.2204 11 1 1.8261 -2.5204 4.0076 12 6 2.0400 -0.7212 -1.2494 13 7 1.5503 -0.0286 -2.4487 14 6 2.0208 -0.6950 -3.6704 15 1 2.0357 -1.7719 -3.5027 16 6 1.0938 -0.3966 -4.7618 17 6 1.5005 -1.0952 -6.0750 18 6 2.6347 -0.3294 -6.6993 19 8 3.9286 -0.8315 -6.3090 20 6 4.0964 -1.1978 -4.9245 21 6 3.4541 -0.2182 -3.9809 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 0.7096 1.1617 3.4844 29 1 3.1300 -0.7208 -1.2496 30 1 1.6767 -1.7489 -1.2494 31 1 0.5437 0.0415 -2.4402 32 1 0.0948 -0.7284 -4.4788 33 1 1.0741 0.6809 -4.9252 34 1 1.8214 -2.1149 -5.8623 35 1 0.6512 -1.1121 -6.7581 36 1 2.5459 -0.3917 -7.7840 37 1 2.5598 0.7160 -6.4003 38 1 3.6543 -2.1813 -4.7649 39 1 5.1619 -1.2534 -4.7021 40 1 3.4188 0.7672 -4.4455 41 1 4.0309 -0.1686 -3.0573 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459732043.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:39 Heat of formation + Delta-G solvation = -57.403893 kcal Electronic energy + Delta-G solvation = -18452.502457 eV Core-core repulsion = 15752.906412 eV Total energy + Delta-G solvation = -2699.596045 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.58311 -36.95861 -35.06786 -32.82787 -31.68492 -29.98720 -26.95251 -25.55492 -25.21587 -24.95364 -23.14504 -20.65797 -20.15711 -18.38090 -16.81046 -16.53144 -15.74334 -15.16907 -14.95824 -14.40203 -14.08792 -13.58153 -13.25064 -13.05393 -12.73166 -12.61267 -12.34302 -11.99284 -11.45694 -11.22559 -11.19495 -11.00176 -10.81485 -10.63766 -10.61271 -10.43514 -10.34938 -10.14076 -10.04716 -9.48408 -9.38027 -9.04439 -8.62842 -8.28932 -7.72262 -5.91085 -4.01596 3.32531 3.37433 3.40000 3.78104 4.39665 4.51791 4.75572 4.87926 4.88719 5.08707 5.28561 5.34286 5.44726 5.60050 5.66671 5.69810 5.72884 5.85927 5.96910 6.08277 6.15111 6.28926 6.34375 6.37513 6.50359 6.72436 6.89007 7.07379 7.16512 7.23745 7.38186 7.47335 7.73366 7.75612 7.83185 7.97691 8.21006 8.34646 8.55917 8.99637 9.63371 11.09374 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.044289 B = 0.005136 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.061387 B = 5450.710449 C = 5712.909046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.069 3.931 3 C -0.118 4.118 4 C -0.507 4.507 5 H 0.051 0.949 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.888 3.112 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.279 1.279 12 C 0.076 3.924 13 N -0.684 5.684 14 C 0.085 3.915 15 H 0.034 0.966 16 C -0.124 4.124 17 C -0.151 4.151 18 C 0.064 3.936 19 O -0.399 6.399 20 C 0.064 3.936 21 C -0.141 4.141 22 H 0.083 0.917 23 H 0.018 0.982 24 H 0.010 0.990 25 H 0.073 0.927 26 H 0.017 0.983 27 H 0.020 0.980 28 H 0.258 0.742 29 H 0.056 0.944 30 H 0.012 0.988 31 H 0.337 0.663 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.047 0.953 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.861 -2.225 -14.592 14.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.068 3.932 3 C -0.176 4.176 4 C -0.546 4.546 5 H 0.069 0.931 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.717 3.283 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.205 1.205 12 C -0.052 4.052 13 N -0.316 5.316 14 C -0.025 4.025 15 H 0.052 0.948 16 C -0.161 4.161 17 C -0.189 4.189 18 C -0.012 4.012 19 O -0.319 6.319 20 C -0.013 4.013 21 C -0.179 4.179 22 H 0.102 0.898 23 H 0.037 0.963 24 H 0.029 0.971 25 H 0.092 0.908 26 H 0.036 0.964 27 H 0.039 0.961 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.030 0.970 31 H 0.157 0.843 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.104 0.896 40 H 0.093 0.907 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.417 -1.659 -14.547 14.709 hybrid contribution -0.479 -1.329 1.171 1.835 sum 0.938 -2.988 -13.376 13.738 Atomic orbital electron populations 1.21834 0.98587 0.98299 1.00254 1.18091 0.92057 0.93065 0.89993 1.21634 0.97741 0.98198 1.00044 1.21070 1.31207 1.11811 0.90519 0.93115 1.24881 0.95044 0.94941 0.98669 1.69821 1.36806 1.22722 1.23006 0.86725 0.79199 0.79748 0.82659 1.20397 1.21349 1.20490 1.22187 0.98948 0.94203 0.89877 1.60683 1.16104 1.53839 1.00996 1.20524 0.94609 0.96149 0.91201 0.94825 1.20841 0.99131 1.01596 0.94573 1.21890 0.98984 1.00560 0.97477 1.22278 0.82825 0.97168 0.98942 1.88213 1.32019 1.85359 1.26339 1.22313 1.00880 0.97193 0.80869 1.21916 0.96250 0.99582 1.00127 0.89832 0.96284 0.97099 0.90781 0.96351 0.96143 0.93142 0.92573 0.97019 0.84307 0.92003 0.90921 0.90907 0.90570 0.90006 0.92971 0.93469 0.89647 0.90695 0.89836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 7.92 37.16 0.29 -2.81 16 2 C 0.07 1.65 0.57 -155.66 -0.09 1.56 16 3 C -0.12 -2.89 8.09 37.16 0.30 -2.58 16 4 C -0.51 -13.65 8.01 -34.44 -0.28 -13.92 16 5 H 0.05 1.36 7.74 -52.49 -0.41 0.96 16 6 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 7 N -0.88 -24.49 9.35 55.43 0.52 -23.97 16 8 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 C 0.08 1.58 4.34 -3.82 -0.02 1.56 16 13 N -0.68 -11.96 5.49 -109.47 -0.60 -12.56 16 14 C 0.09 1.23 2.06 -70.28 -0.14 1.09 16 15 H 0.03 0.51 7.20 -51.93 -0.37 0.14 16 16 C -0.12 -1.49 4.56 -29.30 -0.13 -1.62 16 17 C -0.15 -1.54 5.61 -27.39 -0.15 -1.70 16 18 C 0.06 0.69 6.26 35.87 0.22 0.92 16 19 O -0.40 -5.26 10.88 -35.23 -0.38 -5.64 16 20 C 0.06 0.80 6.26 35.87 0.22 1.03 16 21 C -0.14 -1.95 5.16 -27.39 -0.14 -2.10 16 22 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.01 0.22 6.57 -51.93 -0.34 -0.13 16 25 H 0.07 1.98 6.07 -51.93 -0.32 1.67 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.02 0.45 7.60 -51.93 -0.39 0.06 16 28 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.06 1.19 7.12 -51.93 -0.37 0.82 16 30 H 0.01 0.25 8.04 -51.93 -0.42 -0.17 16 31 H 0.34 5.85 6.24 -39.29 -0.25 5.60 16 32 H 0.06 0.73 7.97 -51.93 -0.41 0.31 16 33 H 0.07 0.89 7.56 -51.93 -0.39 0.49 16 34 H 0.07 0.79 7.15 -51.93 -0.37 0.42 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 37 H 0.05 0.57 6.67 -51.93 -0.35 0.22 16 38 H 0.05 0.58 6.67 -51.93 -0.35 0.23 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.07 1.06 7.15 -51.93 -0.37 0.69 16 41 H 0.08 1.28 7.02 -51.93 -0.36 0.91 16 LS Contribution 302.44 15.07 4.56 4.56 Total: -1.00 -27.47 302.44 -7.96 -35.43 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -7.03 Total: 2.99 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: 0.00 Total: -16.90 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: -0.08 Total: -36.53 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -0.38 Total: -5.64 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.47 -7.96 -35.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459732043.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.972 kcal (2) G-P(sol) polarization free energy of solvation -27.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds