Wall clock time and date at job start Sun Mar 29 2020 22:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.46873 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 C 1.53006 * 109.47127 * 240.00489 * 2 1 3 13 13 N 1.46899 * 109.47163 * 59.99810 * 12 2 1 14 14 C 1.46896 * 110.99916 * 180.02562 * 13 12 2 15 15 H 1.08999 * 108.94646 * 36.23176 * 14 13 12 16 16 C 1.46276 * 108.96363 * 154.99855 * 14 13 12 17 17 C 1.54207 * 112.07677 * 181.55865 * 16 14 13 18 18 C 1.50417 * 108.76649 * 282.18944 * 17 16 14 19 19 O 1.44181 * 112.77368 * 92.58113 * 18 17 16 20 20 C 1.44191 * 116.92709 * 318.47322 * 19 18 17 21 21 C 1.50413 * 112.77766 * 318.47652 * 20 19 18 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 26 26 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 28 28 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.47050 * 179.97438 * 12 2 1 30 30 H 1.09001 * 109.47002 * 299.99574 * 12 2 1 31 31 H 1.00904 * 110.99872 * 303.95535 * 13 12 2 32 32 H 1.08999 * 108.96692 * 302.22867 * 16 14 13 33 33 H 1.09000 * 108.96285 * 60.89181 * 16 14 13 34 34 H 1.09000 * 109.58833 * 41.97280 * 17 16 14 35 35 H 1.09000 * 109.58847 * 162.40355 * 17 16 14 36 36 H 1.09011 * 108.81824 * 213.42515 * 18 17 16 37 37 H 1.08999 * 108.82350 * 331.83377 * 18 17 16 38 38 H 1.08997 * 108.82208 * 79.32241 * 20 19 18 39 39 H 1.08991 * 108.82316 * 197.62633 * 20 19 18 40 40 H 1.09004 * 109.58990 * 332.78941 * 21 20 19 41 41 H 1.09001 * 109.59033 * 212.36169 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8271 -0.4200 5.2204 11 1 1.8261 -2.5204 4.0076 12 6 2.0400 -0.7212 -1.2494 13 7 1.5503 -0.0286 -2.4487 14 6 2.0208 -0.6950 -3.6704 15 1 2.0357 -1.7719 -3.5027 16 6 1.0938 -0.3966 -4.7618 17 6 1.5005 -1.0952 -6.0750 18 6 2.6347 -0.3294 -6.6993 19 8 3.9286 -0.8315 -6.3090 20 6 4.0964 -1.1978 -4.9245 21 6 3.4541 -0.2182 -3.9809 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 0.7096 1.1617 3.4844 29 1 3.1300 -0.7208 -1.2496 30 1 1.6767 -1.7489 -1.2494 31 1 0.5437 0.0415 -2.4402 32 1 0.0948 -0.7284 -4.4788 33 1 1.0741 0.6809 -4.9252 34 1 1.8214 -2.1149 -5.8623 35 1 0.6512 -1.1121 -6.7581 36 1 2.5459 -0.3917 -7.7840 37 1 2.5598 0.7160 -6.4003 38 1 3.6543 -2.1813 -4.7649 39 1 5.1619 -1.2534 -4.7021 40 1 3.4188 0.7672 -4.4455 41 1 4.0309 -0.1686 -3.0573 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459732043.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:38 Heat of formation + Delta-G solvation = -73.877806 kcal Electronic energy + Delta-G solvation = -18453.216820 eV Core-core repulsion = 15752.906412 eV Total energy + Delta-G solvation = -2700.310408 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.64648 -38.49804 -36.50403 -34.12941 -33.15421 -31.50919 -28.09754 -27.48856 -27.22705 -26.11694 -24.65461 -21.62484 -21.26533 -20.23362 -18.07905 -17.70670 -17.36847 -16.70093 -16.26485 -15.84215 -15.47997 -14.86659 -14.56965 -14.29911 -14.28823 -13.91307 -13.77739 -13.32108 -13.13921 -12.98683 -12.65011 -12.61578 -12.36893 -12.17995 -12.13331 -11.93051 -11.79012 -11.51666 -11.39733 -11.28506 -10.85698 -10.59855 -10.42528 -10.34181 -9.18135 -7.96723 -6.13713 1.43169 1.44051 1.50813 2.46224 2.87656 3.25159 3.25785 3.77766 3.85300 4.00117 4.11833 4.28827 4.46829 4.53181 4.57551 4.60498 4.67169 4.73734 4.82536 4.87049 4.93162 5.02425 5.10992 5.11992 5.15433 5.19541 5.26125 5.33741 5.36059 5.43648 5.54149 5.69609 5.76848 6.17526 6.25717 6.32434 6.34490 6.49667 6.65899 6.95692 7.53844 9.01165 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.044289 B = 0.005136 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.061387 B = 5450.710449 C = 5712.909046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.059 3.941 3 C -0.104 4.104 4 C -0.528 4.528 5 H 0.043 0.957 6 C 0.023 3.977 7 N -0.903 5.903 8 Si 0.944 3.056 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.093 3.907 13 N -0.685 5.685 14 C 0.088 3.912 15 H 0.029 0.971 16 C -0.122 4.122 17 C -0.142 4.142 18 C 0.058 3.942 19 O -0.414 6.414 20 C 0.068 3.932 21 C -0.134 4.134 22 H 0.055 0.945 23 H 0.016 0.984 24 H 0.034 0.966 25 H 0.047 0.953 26 H 0.009 0.991 27 H 0.034 0.966 28 H 0.257 0.743 29 H 0.048 0.952 30 H 0.005 0.995 31 H 0.339 0.661 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.703 -2.728 -15.973 16.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.058 3.942 3 C -0.162 4.162 4 C -0.566 4.566 5 H 0.062 0.938 6 C -0.176 4.176 7 N -0.542 5.542 8 Si 0.770 3.230 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C -0.036 4.036 13 N -0.318 5.318 14 C -0.022 4.022 15 H 0.047 0.953 16 C -0.160 4.160 17 C -0.180 4.180 18 C -0.018 4.018 19 O -0.334 6.334 20 C -0.009 4.009 21 C -0.173 4.173 22 H 0.074 0.926 23 H 0.035 0.965 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.028 0.972 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.024 0.976 31 H 0.159 0.841 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.111 0.889 40 H 0.091 0.909 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.258 -2.164 -15.943 16.138 hybrid contribution -0.433 -1.147 1.560 1.984 sum 0.825 -3.311 -14.383 14.782 Atomic orbital electron populations 1.21663 0.98158 0.98009 1.00025 1.18152 0.92428 0.92862 0.90745 1.21461 0.96990 0.98421 0.99351 1.21402 1.31319 1.11909 0.92012 0.93841 1.25526 0.95325 0.95628 1.01134 1.69955 1.37372 1.23534 1.23331 0.85848 0.78648 0.78816 0.79657 1.20178 1.21060 1.20103 1.21823 0.98286 0.93577 0.89944 1.60617 1.16215 1.53900 1.01035 1.20616 0.95410 0.95557 0.90619 0.95301 1.20809 0.98651 1.01891 0.94615 1.21843 0.99661 0.99759 0.96758 1.22474 0.82043 0.97012 1.00278 1.88199 1.33534 1.85515 1.26180 1.22251 1.01294 0.96717 0.80593 1.21840 0.95799 0.99963 0.99666 0.92602 0.96506 0.94681 0.93367 0.97193 0.94711 0.93321 0.93374 0.97637 0.84073 0.91478 0.90896 0.91376 0.88092 0.87896 0.93144 0.93176 0.88885 0.90921 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.63 7.92 71.98 0.57 -5.06 16 2 C 0.06 2.82 0.57 -52.93 -0.03 2.79 16 3 C -0.10 -5.09 8.09 71.98 0.58 -4.51 16 4 C -0.53 -28.53 8.01 25.60 0.21 -28.33 16 5 H 0.04 2.35 7.74 -2.91 -0.02 2.33 16 6 C 0.02 1.25 5.15 84.66 0.44 1.68 16 7 N -0.90 -50.42 9.35 21.45 0.20 -50.22 16 8 Si 0.94 43.35 29.54 68.60 2.03 45.37 16 9 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 12 C 0.09 3.80 4.34 86.31 0.37 4.17 16 13 N -0.69 -23.13 5.49 -500.24 -2.75 -25.88 16 14 C 0.09 2.40 2.06 43.26 0.09 2.49 16 15 H 0.03 0.84 7.20 -2.39 -0.02 0.82 16 16 C -0.12 -2.65 4.56 28.93 0.13 -2.51 16 17 C -0.14 -2.50 5.61 30.17 0.17 -2.33 16 18 C 0.06 1.09 6.26 71.15 0.45 1.54 16 19 O -0.41 -10.08 10.88 -148.98 -1.62 -11.70 16 20 C 0.07 1.61 6.26 71.15 0.45 2.05 16 21 C -0.13 -3.60 5.16 30.17 0.16 -3.44 16 22 H 0.06 2.93 6.07 -2.39 -0.01 2.91 16 23 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.03 1.42 6.57 -2.38 -0.02 1.40 16 25 H 0.05 2.59 6.07 -2.39 -0.01 2.58 16 26 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.03 1.54 7.60 -2.39 -0.02 1.52 16 28 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 29 H 0.05 2.03 7.12 -2.39 -0.02 2.01 16 30 H 0.01 0.23 8.04 -2.39 -0.02 0.21 16 31 H 0.34 11.18 6.24 -89.69 -0.56 10.62 16 32 H 0.07 1.40 7.97 -2.39 -0.02 1.38 16 33 H 0.07 1.60 7.56 -2.39 -0.02 1.58 16 34 H 0.07 1.30 7.15 -2.39 -0.02 1.28 16 35 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.05 0.98 6.67 -2.39 -0.02 0.96 16 38 H 0.05 1.16 6.67 -2.39 -0.02 1.14 16 39 H 0.09 2.03 8.14 -2.39 -0.02 2.02 16 40 H 0.07 1.97 7.15 -2.39 -0.02 1.95 16 41 H 0.07 2.00 7.02 -2.39 -0.02 1.99 16 Total: -1.00 -57.68 302.44 1.87 -55.81 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.44 Total: 18.08 kcal Atomic # 6 Polarization: -35.04 SS G_CDS: 3.58 Total: -31.46 kcal Atomic # 7 Polarization: -73.55 SS G_CDS: -2.55 Total: -76.10 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -1.62 Total: -11.70 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -57.68 1.87 -55.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459732043.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.071 kcal (2) G-P(sol) polarization free energy of solvation -57.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds