Wall clock time and date at job start Sun Mar 29 2020 22:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99663 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00301 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00817 * 8 6 4 12 12 C 1.52992 * 109.47482 * 239.99653 * 2 1 3 13 13 N 1.46905 * 109.46996 * 60.00113 * 12 2 1 14 14 C 1.46902 * 110.99871 * 180.02562 * 13 12 2 15 15 C 1.53002 * 109.46792 * 179.97438 * 14 13 12 16 16 H 1.08998 * 109.52131 * 55.12869 * 15 14 13 17 17 C 1.53182 * 109.52087 * 175.31261 * 15 14 13 18 18 C 1.53175 * 109.03666 * 176.88784 * 17 15 14 19 19 C 1.53096 * 109.16472 * 303.02442 * 18 17 15 20 20 O 1.42904 * 109.41644 * 57.60701 * 19 18 17 21 21 C 1.42907 * 114.09394 * 298.84629 * 20 19 18 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 26 26 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 28 28 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.47747 * 179.97438 * 12 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 12 2 1 31 31 H 1.00896 * 111.00092 * 56.04537 * 13 12 2 32 32 H 1.08997 * 109.47595 * 299.99610 * 14 13 12 33 33 H 1.09000 * 109.47204 * 60.00034 * 14 13 12 34 34 H 1.09003 * 109.54538 * 296.75701 * 17 15 14 35 35 H 1.09003 * 109.54052 * 57.02550 * 17 15 14 36 36 H 1.09003 * 109.52600 * 183.11434 * 18 17 15 37 37 H 1.09002 * 109.57334 * 62.95635 * 18 17 15 38 38 H 1.09003 * 109.47691 * 297.62533 * 19 18 17 39 39 H 1.09001 * 109.49307 * 177.59953 * 19 18 17 40 40 H 1.08999 * 109.48010 * 301.16825 * 21 20 19 41 41 H 1.09004 * 109.48403 * 181.14861 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3213 -1.1201 4.0081 9 1 3.8063 -1.1206 4.0082 10 1 1.8260 -0.4203 5.2205 11 1 1.8258 -2.5201 4.0078 12 6 2.0400 -0.7213 -1.2491 13 7 1.5504 -0.0288 -2.4486 14 6 2.0210 -0.6953 -3.6702 15 6 1.4915 0.0525 -4.8955 16 1 1.7821 1.1013 -4.8358 17 6 2.0756 -0.5703 -6.1672 18 6 1.4787 0.1353 -7.3887 19 6 -0.0474 0.0261 -7.3363 20 8 -0.5228 0.5960 -6.1151 21 6 -0.0350 -0.0536 -4.9394 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.6767 1.9563 0.8899 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 0.7082 1.1611 3.4844 29 1 3.1300 -0.7209 -1.2494 30 1 1.6767 -1.7489 -1.2491 31 1 1.8198 0.9435 -2.4401 32 1 3.1108 -0.6955 -3.6873 33 1 1.6572 -1.7227 -3.6868 34 1 3.1588 -0.4482 -6.1687 35 1 1.8268 -1.6310 -6.2012 36 1 1.8468 -0.3382 -8.2990 37 1 1.7691 1.1859 -7.3816 38 1 -0.3386 -1.0232 -7.3854 39 1 -0.4797 0.5631 -8.1806 40 1 -0.3261 -1.1038 -4.9571 41 1 -0.4584 0.4261 -4.0568 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459737723.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:30 Heat of formation + Delta-G solvation = -69.133099 kcal Electronic energy + Delta-G solvation = -18094.227628 eV Core-core repulsion = 15394.122967 eV Total energy + Delta-G solvation = -2700.104662 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.41072 -36.95828 -34.82375 -33.11057 -31.57361 -30.03026 -25.75043 -25.53274 -25.16397 -24.93868 -23.31663 -21.52336 -20.11744 -18.37351 -16.34508 -16.02945 -15.85199 -15.14410 -14.84750 -14.49054 -14.34233 -14.16399 -13.15872 -13.07418 -12.64201 -12.44062 -12.20602 -11.94420 -11.89154 -11.23153 -11.11906 -11.02483 -10.84057 -10.72856 -10.62425 -10.49103 -10.24410 -10.15389 -10.03451 -9.43381 -9.34385 -9.03724 -8.61273 -8.27151 -7.69670 -5.89400 -3.99929 3.33588 3.38511 3.40961 3.95015 4.43369 4.58591 4.72589 4.78275 4.91985 5.11250 5.25035 5.35871 5.39636 5.47833 5.59033 5.72393 5.75337 5.77071 5.88266 5.98863 6.04906 6.31379 6.33913 6.38302 6.42863 6.73717 6.91094 7.09654 7.18714 7.27078 7.40106 7.48842 7.74244 7.77691 7.84793 7.98453 8.23200 8.36611 8.57630 9.01261 9.64924 11.11017 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.054609 B = 0.004482 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.609931 B = 6245.387045 C = 6438.261448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.068 3.932 3 C -0.132 4.132 4 C -0.508 4.508 5 H 0.050 0.950 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.888 3.112 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.076 3.924 13 N -0.687 5.687 14 C 0.064 3.936 15 C -0.118 4.118 16 H 0.076 0.924 17 C -0.118 4.118 18 C -0.154 4.154 19 C 0.059 3.941 20 O -0.386 6.386 21 C 0.073 3.927 22 H 0.017 0.983 23 H 0.020 0.980 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.018 0.982 27 H 0.011 0.989 28 H 0.258 0.742 29 H 0.012 0.988 30 H 0.055 0.945 31 H 0.337 0.663 32 H 0.024 0.976 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.046 0.954 39 H 0.088 0.912 40 H 0.046 0.954 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.740 -1.383 -16.594 16.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.068 3.932 3 C -0.190 4.190 4 C -0.546 4.546 5 H 0.069 0.931 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.204 1.204 12 C -0.052 4.052 13 N -0.319 5.319 14 C -0.066 4.066 15 C -0.138 4.138 16 H 0.094 0.906 17 C -0.156 4.156 18 C -0.192 4.192 19 C -0.018 4.018 20 O -0.305 6.305 21 C -0.003 4.003 22 H 0.036 0.964 23 H 0.039 0.961 24 H 0.092 0.908 25 H 0.102 0.898 26 H 0.037 0.963 27 H 0.030 0.970 28 H 0.069 0.931 29 H 0.030 0.970 30 H 0.074 0.926 31 H 0.156 0.844 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.106 0.894 40 H 0.064 0.936 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.074 -1.440 -16.425 16.488 hybrid contribution 1.659 -0.564 0.859 1.952 sum 1.585 -2.004 -15.566 15.774 Atomic orbital electron populations 1.21634 0.97363 0.98534 1.00091 1.18093 0.93227 0.91962 0.89955 1.21831 0.97647 0.99189 1.00305 1.21073 1.31168 1.11862 0.90533 0.93124 1.24880 0.95030 0.94969 0.98655 1.69823 1.36695 1.22793 1.23003 0.86725 0.79070 0.79851 0.82683 1.20507 1.21355 1.20417 1.22141 0.95433 0.97782 0.89891 1.60604 1.63635 1.06429 1.01238 1.21898 0.96533 0.98352 0.89782 1.21788 0.96981 1.00689 0.94293 0.90601 1.21619 1.00229 0.99677 0.94040 1.22176 0.96810 1.01745 0.98491 1.22527 0.93389 0.98142 0.87746 1.87952 1.70565 1.58077 1.13906 1.22628 0.92661 0.97337 0.87664 0.96355 0.96077 0.90774 0.89848 0.96299 0.97002 0.93140 0.96979 0.92640 0.84353 0.95832 0.91523 0.91685 0.91844 0.91252 0.91172 0.93532 0.89407 0.93561 0.87227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.89 8.09 37.16 0.30 -2.59 16 2 C 0.07 1.65 0.57 -155.66 -0.09 1.56 16 3 C -0.13 -3.12 7.92 37.16 0.29 -2.83 16 4 C -0.51 -13.72 8.01 -34.44 -0.28 -13.99 16 5 H 0.05 1.37 7.74 -52.48 -0.41 0.96 16 6 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 7 N -0.88 -24.57 9.35 55.43 0.52 -24.05 16 8 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.08 1.58 4.59 -3.83 -0.02 1.56 16 13 N -0.69 -12.02 5.22 -113.78 -0.59 -12.62 16 14 C 0.06 0.93 5.08 -3.82 -0.02 0.91 16 15 C -0.12 -1.49 2.53 -90.48 -0.23 -1.72 16 16 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 17 C -0.12 -1.22 5.31 -26.55 -0.14 -1.36 16 18 C -0.15 -1.45 6.14 -26.59 -0.16 -1.61 16 19 C 0.06 0.60 6.84 37.21 0.25 0.86 16 20 O -0.39 -5.28 10.77 -35.23 -0.38 -5.65 16 21 C 0.07 0.99 5.98 37.20 0.22 1.21 16 22 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.02 0.47 7.60 -51.93 -0.39 0.07 16 24 H 0.07 1.99 6.07 -51.93 -0.32 1.67 16 25 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.01 0.24 6.57 -51.93 -0.34 -0.10 16 28 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.34 5.91 6.77 -39.29 -0.27 5.65 16 32 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.11 1.65 7.83 -51.93 -0.41 1.24 16 LS Contribution 313.37 15.07 4.72 4.72 Total: -1.00 -27.47 313.37 -8.21 -35.68 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -7.50 Total: 2.08 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: 0.05 Total: -16.31 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: -0.08 Total: -36.67 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.38 Total: -5.65 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.47 -8.21 -35.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459737723.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.455 kcal (2) G-P(sol) polarization free energy of solvation -27.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds