Wall clock time and date at job start Sun Mar 29 2020 22:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99663 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00301 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00817 * 8 6 4 12 12 C 1.52992 * 109.47482 * 239.99653 * 2 1 3 13 13 N 1.46905 * 109.46996 * 60.00113 * 12 2 1 14 14 C 1.46902 * 110.99871 * 180.02562 * 13 12 2 15 15 C 1.53002 * 109.46792 * 179.97438 * 14 13 12 16 16 H 1.08998 * 109.52131 * 55.12869 * 15 14 13 17 17 C 1.53182 * 109.52087 * 175.31261 * 15 14 13 18 18 C 1.53175 * 109.03666 * 176.88784 * 17 15 14 19 19 C 1.53096 * 109.16472 * 303.02442 * 18 17 15 20 20 O 1.42904 * 109.41644 * 57.60701 * 19 18 17 21 21 C 1.42907 * 114.09394 * 298.84629 * 20 19 18 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 26 26 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 28 28 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.47747 * 179.97438 * 12 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 12 2 1 31 31 H 1.00896 * 111.00092 * 56.04537 * 13 12 2 32 32 H 1.08997 * 109.47595 * 299.99610 * 14 13 12 33 33 H 1.09000 * 109.47204 * 60.00034 * 14 13 12 34 34 H 1.09003 * 109.54538 * 296.75701 * 17 15 14 35 35 H 1.09003 * 109.54052 * 57.02550 * 17 15 14 36 36 H 1.09003 * 109.52600 * 183.11434 * 18 17 15 37 37 H 1.09002 * 109.57334 * 62.95635 * 18 17 15 38 38 H 1.09003 * 109.47691 * 297.62533 * 19 18 17 39 39 H 1.09001 * 109.49307 * 177.59953 * 19 18 17 40 40 H 1.08999 * 109.48010 * 301.16825 * 21 20 19 41 41 H 1.09004 * 109.48403 * 181.14861 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3213 -1.1201 4.0081 9 1 3.8063 -1.1206 4.0082 10 1 1.8260 -0.4203 5.2205 11 1 1.8258 -2.5201 4.0078 12 6 2.0400 -0.7213 -1.2491 13 7 1.5504 -0.0288 -2.4486 14 6 2.0210 -0.6953 -3.6702 15 6 1.4915 0.0525 -4.8955 16 1 1.7821 1.1013 -4.8358 17 6 2.0756 -0.5703 -6.1672 18 6 1.4787 0.1353 -7.3887 19 6 -0.0474 0.0261 -7.3363 20 8 -0.5228 0.5960 -6.1151 21 6 -0.0350 -0.0536 -4.9394 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.6767 1.9563 0.8899 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 0.7082 1.1611 3.4844 29 1 3.1300 -0.7209 -1.2494 30 1 1.6767 -1.7489 -1.2491 31 1 1.8198 0.9435 -2.4401 32 1 3.1108 -0.6955 -3.6873 33 1 1.6572 -1.7227 -3.6868 34 1 3.1588 -0.4482 -6.1687 35 1 1.8268 -1.6310 -6.2012 36 1 1.8468 -0.3382 -8.2990 37 1 1.7691 1.1859 -7.3816 38 1 -0.3386 -1.0232 -7.3854 39 1 -0.4797 0.5631 -8.1806 40 1 -0.3261 -1.1038 -4.9571 41 1 -0.4584 0.4261 -4.0568 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459737723.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:30 Heat of formation + Delta-G solvation = -85.135603 kcal Electronic energy + Delta-G solvation = -18094.921549 eV Core-core repulsion = 15394.122967 eV Total energy + Delta-G solvation = -2700.798582 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.38034 -38.60133 -36.23384 -34.36248 -33.06378 -31.45576 -27.49739 -27.26081 -26.97844 -25.88303 -24.76567 -22.57756 -21.09435 -20.21812 -17.90014 -17.34874 -16.98873 -16.74020 -16.18012 -15.73210 -15.52766 -15.38849 -14.74009 -14.53298 -14.03913 -13.75981 -13.49403 -13.39758 -13.18482 -12.89784 -12.85176 -12.57537 -12.38833 -12.12477 -12.08252 -12.03103 -11.85928 -11.57542 -11.30292 -11.17713 -10.85469 -10.59217 -10.35502 -10.32076 -9.14311 -7.95534 -6.12678 1.43954 1.44681 1.51547 2.47132 3.03615 3.26385 3.37557 3.83107 3.92125 4.06671 4.07678 4.29666 4.46139 4.55447 4.59869 4.62320 4.73278 4.75507 4.80809 4.89651 4.93738 5.00859 5.04253 5.11951 5.12461 5.19048 5.29946 5.32208 5.42950 5.44874 5.55218 5.70639 5.78264 6.18107 6.26648 6.34630 6.35933 6.50388 6.64818 6.96870 7.54860 9.02326 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.054609 B = 0.004482 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.609931 B = 6245.387045 C = 6438.261448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.058 3.942 3 C -0.120 4.120 4 C -0.528 4.528 5 H 0.044 0.956 6 C 0.022 3.978 7 N -0.903 5.903 8 Si 0.944 3.056 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.091 3.909 13 N -0.688 5.688 14 C 0.068 3.932 15 C -0.110 4.110 16 H 0.069 0.931 17 C -0.116 4.116 18 C -0.150 4.150 19 C 0.050 3.950 20 O -0.408 6.408 21 C 0.076 3.924 22 H 0.010 0.990 23 H 0.035 0.965 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.016 0.984 27 H 0.034 0.966 28 H 0.257 0.743 29 H 0.008 0.992 30 H 0.048 0.952 31 H 0.338 0.662 32 H 0.030 0.970 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.104 0.896 40 H 0.049 0.951 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.396 -1.948 -18.140 18.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.057 3.943 3 C -0.178 4.178 4 C -0.567 4.567 5 H 0.063 0.937 6 C -0.177 4.177 7 N -0.542 5.542 8 Si 0.771 3.229 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 C -0.038 4.038 13 N -0.320 5.320 14 C -0.062 4.062 15 C -0.129 4.129 16 H 0.087 0.913 17 C -0.154 4.154 18 C -0.187 4.187 19 C -0.026 4.026 20 O -0.327 6.327 21 C 0.000 4.000 22 H 0.029 0.971 23 H 0.054 0.946 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.035 0.965 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.026 0.974 30 H 0.067 0.933 31 H 0.157 0.843 32 H 0.048 0.952 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.112 0.888 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.122 0.878 40 H 0.067 0.933 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.586 -2.008 -17.990 18.111 hybrid contribution 1.427 -0.381 1.278 1.953 sum 2.012 -2.389 -16.712 17.002 Atomic orbital electron populations 1.21461 0.97680 0.97720 0.99381 1.18159 0.92953 0.92376 0.90785 1.21659 0.97331 0.98853 0.99983 1.21413 1.31274 1.11977 0.91996 0.93740 1.25536 0.95314 0.95655 1.01164 1.69962 1.37292 1.23643 1.23319 0.85837 0.78619 0.78829 0.79623 1.20094 1.21118 1.20140 1.21795 0.94926 0.97158 0.89926 1.60524 1.63769 1.06393 1.01292 1.21936 0.96906 0.98359 0.88966 1.21691 0.96384 1.00220 0.94617 0.91276 1.21621 1.00667 0.99958 0.93109 1.22154 0.95974 1.01623 0.98972 1.22790 0.94227 0.98831 0.86760 1.87918 1.71174 1.58757 1.14874 1.22493 0.93117 0.97084 0.87318 0.97115 0.94641 0.93424 0.92650 0.96513 0.94742 0.93341 0.97388 0.93312 0.84279 0.95202 0.91377 0.90817 0.91177 0.88829 0.91610 0.92677 0.87767 0.93318 0.89379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.12 8.09 71.98 0.58 -4.54 16 2 C 0.06 2.80 0.57 -52.93 -0.03 2.77 16 3 C -0.12 -5.68 7.92 71.98 0.57 -5.11 16 4 C -0.53 -28.62 8.01 25.60 0.21 -28.41 16 5 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 6 C 0.02 1.22 5.15 84.66 0.44 1.65 16 7 N -0.90 -50.72 9.35 21.45 0.20 -50.52 16 8 Si 0.94 43.46 29.54 68.60 2.03 45.49 16 9 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 C 0.09 3.73 4.59 86.30 0.40 4.12 16 13 N -0.69 -23.31 5.22 -513.89 -2.68 -25.99 16 14 C 0.07 1.84 5.08 86.30 0.44 2.27 16 15 C -0.11 -2.58 2.53 -10.70 -0.03 -2.60 16 16 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 17 C -0.12 -2.09 5.31 30.71 0.16 -1.93 16 18 C -0.15 -2.36 6.14 30.69 0.19 -2.17 16 19 C 0.05 0.91 6.84 72.01 0.49 1.40 16 20 O -0.41 -10.60 10.77 -148.98 -1.60 -12.21 16 21 C 0.08 1.98 5.98 72.01 0.43 2.41 16 22 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 23 H 0.03 1.58 7.60 -2.39 -0.02 1.56 16 24 H 0.05 2.58 6.07 -2.38 -0.01 2.56 16 25 H 0.05 2.93 6.07 -2.39 -0.01 2.92 16 26 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.03 1.42 6.57 -2.39 -0.02 1.40 16 28 H 0.26 13.95 8.31 -92.70 -0.77 13.18 16 29 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.34 11.41 6.77 -89.70 -0.61 10.81 16 32 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 1.84 8.14 -2.39 -0.02 1.83 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 39 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.09 2.63 7.83 -2.39 -0.02 2.61 16 Total: -1.00 -57.92 313.37 2.16 -55.77 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.37 Total: 17.60 kcal Atomic # 6 Polarization: -33.98 SS G_CDS: 3.85 Total: -30.14 kcal Atomic # 7 Polarization: -74.03 SS G_CDS: -2.48 Total: -76.51 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -1.60 Total: -12.21 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -57.92 2.16 -55.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459737723.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.368 kcal (2) G-P(sol) polarization free energy of solvation -57.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds