Wall clock time and date at job start Sun Mar 29 2020 22:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46988 * 2 1 4 4 C 1.50701 * 109.47083 * 240.00075 * 2 1 3 5 5 H 1.08000 * 119.99676 * 237.60898 * 4 2 1 6 6 C 1.37876 * 119.99873 * 57.61179 * 4 2 1 7 7 N 1.31517 * 120.00166 * 6.34575 * 6 4 2 8 8 Si 1.86796 * 119.99913 * 186.34723 * 6 4 2 9 9 H 1.48505 * 109.47229 * 84.97233 * 8 6 4 10 10 H 1.48505 * 109.47512 * 204.97479 * 8 6 4 11 11 H 1.48499 * 109.47119 * 324.97386 * 8 6 4 12 12 C 1.52997 * 109.47111 * 120.00106 * 2 1 3 13 13 N 1.46901 * 109.47330 * 300.00238 * 12 2 1 14 14 C 1.46898 * 111.00405 * 179.97438 * 13 12 2 15 15 C 1.52995 * 109.47289 * 179.97438 * 14 13 12 16 16 H 1.09002 * 109.57493 * 304.84351 * 15 14 13 17 17 C 1.53175 * 109.52292 * 184.68460 * 15 14 13 18 18 C 1.53181 * 109.03926 * 183.11400 * 17 15 14 19 19 C 1.53094 * 109.16333 * 56.97894 * 18 17 15 20 20 O 1.42908 * 109.41777 * 302.39434 * 19 18 17 21 21 C 1.42908 * 114.09433 * 61.15368 * 20 19 18 22 22 H 1.08997 * 109.46836 * 305.11301 * 1 2 3 23 23 H 1.09004 * 109.46850 * 65.11280 * 1 2 3 24 24 H 1.08998 * 109.47235 * 185.11104 * 1 2 3 25 25 H 1.09004 * 109.46623 * 179.97438 * 3 2 1 26 26 H 1.08996 * 109.47390 * 299.99811 * 3 2 1 27 27 H 1.09001 * 109.46778 * 60.00388 * 3 2 1 28 28 H 0.96998 * 119.99542 * 179.97438 * 7 6 4 29 29 H 1.08992 * 109.47643 * 180.02562 * 12 2 1 30 30 H 1.09006 * 109.46818 * 59.99605 * 12 2 1 31 31 H 1.00904 * 111.00000 * 56.04004 * 13 12 2 32 32 H 1.08998 * 109.47150 * 59.99907 * 14 13 12 33 33 H 1.09000 * 109.46736 * 299.99823 * 14 13 12 34 34 H 1.08997 * 109.54531 * 63.24943 * 17 15 14 35 35 H 1.08997 * 109.61741 * 303.02483 * 17 15 14 36 36 H 1.08998 * 109.52340 * 297.08030 * 18 17 15 37 37 H 1.08997 * 109.57650 * 176.91852 * 18 17 15 38 38 H 1.08995 * 109.48367 * 182.41310 * 19 18 17 39 39 H 1.09007 * 109.47877 * 62.37421 * 19 18 17 40 40 H 1.09005 * 109.47979 * 58.82940 * 21 20 19 41 41 H 1.09005 * 109.47588 * 178.86028 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6848 -1.5654 -1.1318 6 6 1.6592 -0.2687 -2.4821 7 7 0.9688 0.8435 -2.6082 8 14 2.1340 -1.2502 -3.9989 9 1 1.1292 -2.3185 -4.2318 10 1 2.1800 -0.3483 -5.1778 11 1 3.4704 -1.8640 -3.7929 12 6 2.0401 -0.7213 1.2492 13 7 1.5504 -0.0289 2.4487 14 6 2.0208 -0.6953 3.6703 15 6 1.4923 0.0532 4.8955 16 1 1.7837 1.1019 4.8366 17 6 2.0763 -0.5697 6.1672 18 6 1.4803 0.1367 7.3888 19 6 -0.0459 0.0285 7.3369 20 8 -0.5214 0.5984 6.1157 21 6 -0.0344 -0.0518 4.9400 22 1 -0.3633 0.5911 0.8406 23 1 -0.3633 0.4325 -0.9323 24 1 -0.3633 -1.0236 0.0915 25 1 3.1301 1.4425 0.0005 26 1 1.6768 1.9564 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 0.7065 1.1544 -3.4888 29 1 3.1300 -0.7209 1.2495 30 1 1.6766 -1.7489 1.2492 31 1 0.5438 0.0413 2.4401 32 1 3.1107 -0.6955 3.6874 33 1 1.6570 -1.7226 3.6868 34 1 3.1595 -0.4483 6.1684 35 1 1.8282 -1.6304 6.2024 36 1 1.7714 1.1871 7.3802 37 1 1.8482 -0.3358 8.2995 38 1 -0.4774 0.5662 8.1811 39 1 -0.3378 -1.0206 7.3863 40 1 -0.3262 -1.1019 4.9580 41 1 -0.4577 0.4281 4.0575 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459737724.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:32 Heat of formation + Delta-G solvation = -68.546817 kcal Electronic energy + Delta-G solvation = -18103.358487 eV Core-core repulsion = 15403.279249 eV Total energy + Delta-G solvation = -2700.079239 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.50608 -36.97216 -34.85852 -33.16663 -31.59212 -30.01633 -25.78276 -25.56244 -25.20396 -25.06159 -23.35818 -21.50428 -20.06858 -18.41731 -16.34255 -16.30495 -15.86055 -15.22630 -14.85258 -14.48915 -14.40277 -13.90992 -13.38880 -13.11684 -12.70652 -12.51809 -12.34578 -12.05251 -11.48232 -11.33798 -11.16614 -11.05892 -10.94646 -10.73196 -10.59946 -10.50782 -10.28043 -10.17764 -10.01181 -9.46530 -9.37109 -9.03175 -8.62952 -8.26086 -7.70302 -5.90025 -4.00031 3.32461 3.39167 3.41629 3.83606 4.43080 4.57553 4.70859 4.75442 4.87204 5.06661 5.18023 5.34812 5.35535 5.39706 5.57431 5.61380 5.67308 5.72599 5.86628 5.97272 6.05486 6.16172 6.34244 6.34937 6.46152 6.73631 6.88248 7.09506 7.15469 7.17543 7.41550 7.49752 7.73648 7.77821 7.84287 7.97113 8.21935 8.37714 8.57973 9.01150 9.64558 11.10248 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.054183 B = 0.004485 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.638542 B = 6241.840411 C = 6419.275767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.067 3.933 3 C -0.119 4.119 4 C -0.507 4.507 5 H 0.051 0.949 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.888 3.112 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.075 3.925 13 N -0.687 5.687 14 C 0.065 3.935 15 C -0.120 4.120 16 H 0.088 0.912 17 C -0.117 4.117 18 C -0.155 4.155 19 C 0.059 3.941 20 O -0.382 6.382 21 C 0.064 3.936 22 H 0.013 0.987 23 H 0.082 0.918 24 H 0.017 0.983 25 H 0.017 0.983 26 H 0.076 0.924 27 H 0.019 0.981 28 H 0.258 0.742 29 H 0.056 0.944 30 H 0.012 0.988 31 H 0.335 0.665 32 H 0.069 0.931 33 H 0.021 0.979 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.535 -2.350 16.748 16.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.067 3.933 3 C -0.177 4.177 4 C -0.546 4.546 5 H 0.070 0.930 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.716 3.284 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.053 4.053 13 N -0.319 5.319 14 C -0.065 4.065 15 C -0.139 4.139 16 H 0.107 0.893 17 C -0.155 4.155 18 C -0.193 4.193 19 C -0.018 4.018 20 O -0.300 6.300 21 C -0.013 4.013 22 H 0.032 0.968 23 H 0.101 0.899 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.095 0.905 27 H 0.038 0.962 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.031 0.969 31 H 0.155 0.845 32 H 0.088 0.912 33 H 0.039 0.961 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.228 -1.617 16.583 16.663 hybrid contribution -0.011 -1.690 -0.861 1.897 sum -0.239 -3.307 15.721 16.067 Atomic orbital electron populations 1.21818 0.98593 0.97554 1.01114 1.18106 0.92038 0.93182 0.89984 1.21665 0.97758 0.98124 1.00125 1.21099 1.29413 1.13566 0.90523 0.93032 1.24882 0.95279 0.94762 0.98628 1.69849 1.38902 1.20466 1.22950 0.86689 0.78819 0.80053 0.82846 1.20792 1.21356 1.20143 1.22162 0.98941 0.94329 0.89876 1.60637 1.16157 1.53824 1.01295 1.21893 1.00281 0.94579 0.89736 1.21817 0.95799 1.01958 0.94336 0.89317 1.21606 1.00543 0.99426 0.93914 1.22179 0.96582 1.01945 0.98554 1.22556 0.93613 0.98130 0.87500 1.87950 1.70504 1.57842 1.13747 1.22704 0.93530 0.97001 0.88067 0.96827 0.89932 0.96388 0.96375 0.90545 0.96186 0.93173 0.92586 0.96940 0.84538 0.91239 0.96096 0.91360 0.92049 0.90988 0.91166 0.89216 0.93507 0.93601 0.88347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 7.82 37.16 0.29 -2.86 16 2 C 0.07 1.64 0.57 -155.66 -0.09 1.56 16 3 C -0.12 -2.94 8.12 37.16 0.30 -2.64 16 4 C -0.51 -13.74 8.01 -34.44 -0.28 -14.02 16 5 H 0.05 1.40 7.75 -52.49 -0.41 0.99 16 6 C 0.07 1.78 5.10 -17.82 -0.09 1.69 16 7 N -0.88 -24.57 9.38 55.43 0.52 -24.05 16 8 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.08 1.58 4.59 -3.82 -0.02 1.57 16 13 N -0.69 -12.26 5.71 -113.79 -0.65 -12.91 16 14 C 0.07 0.95 5.15 -3.83 -0.02 0.93 16 15 C -0.12 -1.52 2.60 -90.48 -0.24 -1.75 16 16 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 17 C -0.12 -1.21 5.31 -26.55 -0.14 -1.35 16 18 C -0.15 -1.43 6.14 -26.59 -0.16 -1.59 16 19 C 0.06 0.59 6.84 37.21 0.25 0.84 16 20 O -0.38 -5.05 10.77 -35.23 -0.38 -5.43 16 21 C 0.06 0.82 5.84 37.21 0.22 1.03 16 22 H 0.01 0.28 6.84 -51.93 -0.36 -0.08 16 23 H 0.08 2.18 6.01 -51.93 -0.31 1.86 16 24 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 2.07 6.03 -51.93 -0.31 1.75 16 27 H 0.02 0.45 7.60 -51.93 -0.39 0.05 16 28 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.34 5.88 5.20 -39.29 -0.20 5.68 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.10 1.33 6.80 -51.93 -0.35 0.98 16 LS Contribution 311.33 15.07 4.69 4.69 Total: -1.00 -27.84 311.33 -8.20 -36.04 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.39 Total: 2.11 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 0.03 Total: -16.60 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: -0.13 Total: -36.96 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.38 Total: -5.43 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.84 -8.20 -36.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459737724.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.505 kcal (2) G-P(sol) polarization free energy of solvation -27.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds