Wall clock time and date at job start Sun Mar 29 2020 22:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46901 * 2 1 4 4 C 1.50694 * 109.46867 * 119.99883 * 2 1 3 5 5 H 1.08002 * 120.00179 * 119.99762 * 4 2 1 6 6 C 1.37879 * 120.00472 * 300.00079 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 C 1.52997 * 109.46903 * 240.00006 * 2 1 3 13 13 N 1.46902 * 109.47411 * 60.00177 * 12 2 1 14 14 C 1.46903 * 110.99710 * 179.97438 * 13 12 2 15 15 C 1.53002 * 109.46566 * 179.97438 * 14 13 12 16 16 C 1.53003 * 109.46715 * 179.97438 * 15 14 13 17 17 H 1.08994 * 110.80789 * 305.70588 * 16 15 14 18 18 C 1.54814 * 110.90445 * 182.07223 * 16 15 14 19 19 C 1.54101 * 104.18655 * 220.92347 * 18 16 15 20 20 O 1.43744 * 107.29573 * 357.97411 * 19 18 16 21 21 C 1.44424 * 106.99926 * 26.48679 * 20 19 18 22 22 H 1.09000 * 109.47703 * 300.00482 * 1 2 3 23 23 H 1.09007 * 109.47140 * 60.00334 * 1 2 3 24 24 H 1.09000 * 109.47809 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46412 * 180.02562 * 3 2 1 26 26 H 1.08993 * 109.47298 * 299.99321 * 3 2 1 27 27 H 1.09001 * 109.47411 * 60.00254 * 3 2 1 28 28 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 29 29 H 1.09003 * 109.46788 * 180.02562 * 12 2 1 30 30 H 1.08999 * 109.46950 * 299.99654 * 12 2 1 31 31 H 1.00895 * 110.99573 * 303.94943 * 13 12 2 32 32 H 1.08998 * 109.47239 * 299.99607 * 14 13 12 33 33 H 1.08999 * 109.47137 * 60.00379 * 14 13 12 34 34 H 1.08996 * 109.47460 * 300.00506 * 15 14 13 35 35 H 1.08999 * 109.46968 * 60.00416 * 15 14 13 36 36 H 1.09001 * 110.49031 * 339.60006 * 18 16 15 37 37 H 1.09001 * 110.48722 * 102.24868 * 18 16 15 38 38 H 1.09004 * 109.87625 * 117.40036 * 19 18 16 39 39 H 1.08999 * 109.87621 * 238.54884 * 19 18 16 40 40 H 1.08996 * 110.64870 * 201.48217 * 21 20 19 41 41 H 1.08994 * 110.60184 * 78.47441 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6531 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9435 0.8302 2.6033 8 14 2.3212 -1.1203 4.0080 9 1 1.8268 -0.4199 5.2204 10 1 1.8257 -2.5201 4.0078 11 1 3.8062 -1.1209 4.0082 12 6 2.0400 -0.7212 -1.2492 13 7 1.5503 -0.0288 -2.4487 14 6 2.0219 -0.6946 -3.6703 15 6 1.4923 0.0532 -4.8955 16 6 1.9839 -0.6399 -6.1679 17 1 3.0692 -0.7404 -6.1594 18 6 1.5093 0.1208 -7.4299 19 6 1.0990 -0.9944 -8.4111 20 8 1.3718 -2.2508 -7.7683 21 6 1.3019 -2.0205 -6.3443 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3635 -1.0276 -0.0005 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 0.7088 1.1614 3.4844 29 1 3.1300 -0.7216 -1.2490 30 1 1.6766 -1.7489 -1.2492 31 1 0.5438 0.0413 -2.4402 32 1 3.1117 -0.6941 -3.6869 33 1 1.6587 -1.7222 -3.6873 34 1 0.4024 0.0524 -4.8787 35 1 1.8551 1.0809 -4.8787 36 1 0.6547 0.7551 -7.1943 37 1 2.3232 0.7146 -7.8460 38 1 0.0354 -0.9167 -8.6368 39 1 1.6816 -0.9134 -9.3288 40 1 1.8501 -2.7914 -5.8029 41 1 0.2644 -1.9814 -6.0126 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459738829.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:38 Heat of formation + Delta-G solvation = -66.437079 kcal Electronic energy + Delta-G solvation = -17688.175574 eV Core-core repulsion = 14988.187820 eV Total energy + Delta-G solvation = -2699.987754 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.62308 -37.07268 -34.96925 -32.92564 -31.03316 -29.79638 -27.26212 -25.55581 -25.19482 -24.00677 -22.91892 -21.57197 -20.48067 -18.39169 -16.71950 -15.94305 -15.86650 -15.64792 -15.10096 -14.64929 -14.05890 -13.87017 -13.42775 -13.00311 -12.65474 -12.63205 -12.16308 -11.96014 -11.69630 -11.44484 -11.12700 -10.95138 -10.87919 -10.83873 -10.67439 -10.57572 -10.48413 -10.15359 -10.04196 -9.84710 -9.37292 -9.05059 -8.62297 -8.28060 -7.69767 -5.90377 -4.00827 3.33273 3.38016 3.40687 3.76390 4.35557 4.44027 4.55691 4.66099 4.87143 5.00606 5.10412 5.30837 5.34953 5.40353 5.54794 5.56132 5.61375 5.63848 5.76102 5.82452 5.98071 6.21707 6.27339 6.35893 6.44255 6.68364 6.72685 6.90015 7.08377 7.17564 7.38997 7.47987 7.74253 7.76655 7.84064 7.98802 8.22055 8.35426 8.56833 9.00449 9.64061 11.10134 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.055918 B = 0.003905 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.609715 B = 7168.549156 C = 7369.399611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.068 3.932 3 C -0.118 4.118 4 C -0.508 4.508 5 H 0.051 0.949 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.889 3.111 9 H -0.288 1.288 10 H -0.279 1.279 11 H -0.278 1.278 12 C 0.075 3.925 13 N -0.688 5.688 14 C 0.057 3.943 15 C -0.106 4.106 16 C -0.119 4.119 17 H 0.086 0.914 18 C -0.153 4.153 19 C 0.046 3.954 20 O -0.383 6.383 21 C 0.049 3.951 22 H 0.083 0.917 23 H 0.010 0.990 24 H 0.018 0.982 25 H 0.017 0.983 26 H 0.020 0.980 27 H 0.074 0.926 28 H 0.258 0.742 29 H 0.055 0.945 30 H 0.012 0.988 31 H 0.336 0.664 32 H 0.066 0.934 33 H 0.021 0.979 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.371 -1.241 -16.917 16.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.067 3.933 3 C -0.176 4.176 4 C -0.546 4.546 5 H 0.069 0.931 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.717 3.283 9 H -0.214 1.214 10 H -0.205 1.205 11 H -0.204 1.204 12 C -0.053 4.053 13 N -0.320 5.320 14 C -0.073 4.073 15 C -0.144 4.144 16 C -0.138 4.138 17 H 0.104 0.896 18 C -0.190 4.190 19 C -0.031 4.031 20 O -0.302 6.302 21 C -0.027 4.027 22 H 0.102 0.898 23 H 0.029 0.971 24 H 0.037 0.963 25 H 0.036 0.964 26 H 0.039 0.961 27 H 0.092 0.908 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.030 0.970 31 H 0.155 0.845 32 H 0.084 0.916 33 H 0.039 0.961 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.100 -0.861 -16.867 16.889 hybrid contribution -0.235 -1.112 0.979 1.500 sum -0.134 -1.973 -15.887 16.010 Atomic orbital electron populations 1.21831 0.98535 0.98324 1.00259 1.18094 0.92107 0.93079 0.89988 1.21634 0.97750 0.98196 1.00044 1.21082 1.31209 1.11824 0.90532 0.93076 1.24887 0.95056 0.94949 0.98683 1.69826 1.36819 1.22738 1.23008 0.86713 0.79193 0.79750 0.82617 1.21359 1.20471 1.20395 1.22144 0.98898 0.94353 0.89911 1.60590 1.16197 1.53858 1.01330 1.21952 1.00237 0.94900 0.90220 1.21543 1.00500 1.00220 0.92138 1.22736 1.01269 0.95019 0.94813 0.89588 1.23005 1.02100 0.98439 0.95486 1.23144 1.00089 0.83438 0.96391 1.88861 1.92334 1.30428 1.18589 1.23708 1.00168 0.97041 0.81781 0.89835 0.97071 0.96263 0.96355 0.96137 0.90753 0.93141 0.92632 0.96956 0.84508 0.91565 0.96135 0.91987 0.90633 0.90409 0.90505 0.92582 0.90131 0.88915 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 7.92 37.16 0.29 -2.82 16 2 C 0.07 1.65 0.57 -155.66 -0.09 1.56 16 3 C -0.12 -2.91 8.09 37.16 0.30 -2.60 16 4 C -0.51 -13.76 8.01 -34.44 -0.28 -14.04 16 5 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 6 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 7 N -0.89 -24.58 9.35 55.43 0.52 -24.07 16 8 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 9 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 C 0.08 1.58 4.59 -3.82 -0.02 1.56 16 13 N -0.69 -12.16 5.71 -113.78 -0.65 -12.81 16 14 C 0.06 0.80 5.56 -3.82 -0.02 0.78 16 15 C -0.11 -1.22 4.87 -26.73 -0.13 -1.35 16 16 C -0.12 -1.20 3.12 -88.61 -0.28 -1.48 16 17 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 18 C -0.15 -1.32 6.60 -25.20 -0.17 -1.49 16 19 C 0.05 0.42 7.70 37.73 0.29 0.71 16 20 O -0.38 -4.61 11.52 -35.23 -0.41 -5.02 16 21 C 0.05 0.53 6.49 38.21 0.25 0.78 16 22 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 23 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.02 0.46 7.60 -51.93 -0.39 0.06 16 27 H 0.07 1.99 6.07 -51.93 -0.32 1.68 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.34 5.85 6.77 -39.29 -0.27 5.58 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.02 0.29 7.58 -51.93 -0.39 -0.11 16 34 H 0.06 0.69 8.05 -51.93 -0.42 0.28 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.63 7.86 -51.93 -0.41 0.22 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.97 8.11 -51.93 -0.42 0.55 16 41 H 0.06 0.64 7.98 -51.93 -0.41 0.23 16 LS Contribution 316.25 15.07 4.77 4.77 Total: -1.00 -27.97 316.25 -8.18 -36.16 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -7.46 Total: 1.51 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: 0.07 Total: -16.69 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: -0.13 Total: -36.87 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: -0.41 Total: -5.02 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.97 -8.18 -36.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459738829.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.279 kcal (2) G-P(sol) polarization free energy of solvation -27.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds