Wall clock time and date at job start Sun Mar 29 2020 22:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.46930 * 2 1 4 4 C 1.50695 * 109.47023 * 239.99754 * 2 1 3 5 5 H 1.08001 * 119.99462 * 237.60529 * 4 2 1 6 6 C 1.37876 * 120.00502 * 57.61464 * 4 2 1 7 7 N 1.31515 * 119.99409 * 6.34110 * 6 4 2 8 8 Si 1.86796 * 120.00302 * 186.34729 * 6 4 2 9 9 H 1.48502 * 109.47329 * 84.97026 * 8 6 4 10 10 H 1.48500 * 109.47224 * 204.97007 * 8 6 4 11 11 H 1.48499 * 109.46949 * 324.96730 * 8 6 4 12 12 C 1.52999 * 109.46868 * 119.99669 * 2 1 3 13 13 N 1.46907 * 109.46991 * 300.00578 * 12 2 1 14 14 C 1.46906 * 110.99718 * 180.02562 * 13 12 2 15 15 C 1.53000 * 109.47099 * 179.97438 * 14 13 12 16 16 C 1.52994 * 109.46968 * 179.97438 * 15 14 13 17 17 H 1.08997 * 110.43953 * 56.09605 * 16 15 14 18 18 C 1.54815 * 110.48423 * 178.78124 * 16 15 14 19 19 C 1.55000 * 102.09025 * 139.55729 * 18 16 15 20 20 O 1.44575 * 103.58485 * 323.05329 * 19 18 16 21 21 C 1.43740 * 106.87038 * 39.88352 * 20 19 18 22 22 H 1.08993 * 109.47265 * 305.11488 * 1 2 3 23 23 H 1.09002 * 109.46415 * 65.11008 * 1 2 3 24 24 H 1.08999 * 109.47061 * 185.10997 * 1 2 3 25 25 H 1.09000 * 109.47179 * 179.97438 * 3 2 1 26 26 H 1.09005 * 109.47023 * 299.99599 * 3 2 1 27 27 H 1.08997 * 109.47126 * 59.99435 * 3 2 1 28 28 H 0.97003 * 119.99879 * 180.02562 * 7 6 4 29 29 H 1.08993 * 109.47384 * 180.02562 * 12 2 1 30 30 H 1.08997 * 109.47045 * 59.99915 * 12 2 1 31 31 H 1.00894 * 111.00412 * 56.04747 * 13 12 2 32 32 H 1.09005 * 109.47266 * 59.99464 * 14 13 12 33 33 H 1.09001 * 109.47181 * 299.99598 * 14 13 12 34 34 H 1.09005 * 109.47046 * 59.99884 * 15 14 13 35 35 H 1.09001 * 109.47228 * 300.00123 * 15 14 13 36 36 H 1.09004 * 110.90593 * 257.75095 * 18 16 15 37 37 H 1.09001 * 110.90912 * 21.35695 * 18 16 15 38 38 H 1.09001 * 110.61902 * 81.47881 * 19 18 16 39 39 H 1.09001 * 110.61831 * 204.47284 * 19 18 16 40 40 H 1.09006 * 109.87532 * 214.17361 * 21 20 19 41 41 H 1.08996 * 109.88193 * 93.16785 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6848 -1.5654 -1.1316 6 6 1.6593 -0.2689 -2.4821 7 7 0.9689 0.8433 -2.6082 8 14 2.1342 -1.2505 -3.9988 9 1 1.1294 -2.3188 -4.2317 10 1 2.1801 -0.3487 -5.1777 11 1 3.4706 -1.8642 -3.7927 12 6 2.0400 -0.7212 1.2493 13 7 1.5502 -0.0286 2.4487 14 6 2.0217 -0.6944 3.6704 15 6 1.4930 0.0541 4.8956 16 6 1.9835 -0.6396 6.1679 17 1 3.0712 -0.7100 6.1679 18 6 1.4867 0.1174 7.4237 19 6 1.1028 -1.0460 8.3733 20 8 0.5430 -2.0393 7.4844 21 6 1.3524 -2.0396 6.2965 22 1 -0.3633 0.5911 0.8406 23 1 -0.3632 0.4325 -0.9323 24 1 -0.3633 -1.0236 0.0915 25 1 3.1300 1.4426 0.0005 26 1 1.6767 1.9563 -0.8901 27 1 1.6766 1.9564 0.8899 28 1 0.7060 1.1538 -3.4888 29 1 3.1300 -0.7208 1.2496 30 1 1.6767 -1.7488 1.2493 31 1 0.5437 0.0414 2.4402 32 1 3.1116 -0.6938 3.6870 33 1 1.6586 -1.7220 3.6875 34 1 0.4031 0.0539 4.8792 35 1 1.8564 1.0817 4.8784 36 1 2.2843 0.7233 7.8536 37 1 0.6170 0.7312 7.1892 38 1 1.9865 -1.4384 8.8764 39 1 0.3596 -0.7186 9.1004 40 1 0.7316 -2.2477 5.4251 41 1 2.1357 -2.7927 6.3818 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459738830.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:40 Heat of formation + Delta-G solvation = -65.812360 kcal Electronic energy + Delta-G solvation = -17724.029774 eV Core-core repulsion = 15024.069110 eV Total energy + Delta-G solvation = -2699.960664 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.63977 -37.05276 -34.94846 -32.90697 -31.03830 -29.79152 -27.21532 -25.54527 -25.18889 -24.04453 -22.97874 -21.56639 -20.32661 -18.38555 -16.82088 -16.25009 -15.85846 -15.28374 -15.07983 -14.70552 -14.05393 -13.90166 -13.26679 -12.90953 -12.68183 -12.62239 -12.12225 -11.95873 -11.72174 -11.43661 -11.15233 -11.00108 -10.89653 -10.83500 -10.67064 -10.54958 -10.48149 -10.16728 -10.01457 -9.80042 -9.37260 -9.03422 -8.63035 -8.26278 -7.68442 -5.90373 -4.00285 3.32434 3.39015 3.41592 3.79005 4.33208 4.43441 4.51321 4.72455 4.93822 5.04606 5.05230 5.28764 5.34540 5.41192 5.50098 5.58033 5.63604 5.69004 5.73853 5.82190 6.01998 6.22674 6.28025 6.36695 6.44738 6.70316 6.74035 6.88757 7.09728 7.17837 7.40684 7.49665 7.74415 7.77759 7.84303 7.99459 8.21995 8.37397 8.57916 9.00987 9.64301 11.09944 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.054690 B = 0.003959 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.856381 B = 7071.433513 C = 7249.387707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.067 3.933 3 C -0.119 4.119 4 C -0.507 4.507 5 H 0.052 0.948 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.888 3.112 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.075 3.925 13 N -0.688 5.688 14 C 0.056 3.944 15 C -0.107 4.107 16 C -0.120 4.120 17 H 0.083 0.917 18 C -0.150 4.150 19 C 0.045 3.955 20 O -0.381 6.381 21 C 0.047 3.953 22 H 0.013 0.987 23 H 0.082 0.918 24 H 0.017 0.983 25 H 0.017 0.983 26 H 0.076 0.924 27 H 0.019 0.981 28 H 0.258 0.742 29 H 0.055 0.945 30 H 0.012 0.988 31 H 0.336 0.664 32 H 0.065 0.935 33 H 0.021 0.979 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.058 0.942 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.794 -1.614 17.477 17.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.067 3.933 3 C -0.176 4.176 4 C -0.546 4.546 5 H 0.070 0.930 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.716 3.284 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.053 4.053 13 N -0.319 5.319 14 C -0.074 4.074 15 C -0.145 4.145 16 C -0.140 4.140 17 H 0.102 0.898 18 C -0.188 4.188 19 C -0.032 4.032 20 O -0.300 6.300 21 C -0.029 4.029 22 H 0.032 0.968 23 H 0.100 0.900 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.094 0.906 27 H 0.038 0.962 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.031 0.969 31 H 0.155 0.845 32 H 0.084 0.916 33 H 0.039 0.961 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.048 -1.174 17.354 17.425 hybrid contribution -0.015 -1.286 -0.938 1.592 sum 1.033 -2.460 16.416 16.632 Atomic orbital electron populations 1.21812 0.98578 0.97579 1.01073 1.18103 0.92053 0.93152 0.90002 1.21662 0.97736 0.98159 1.00082 1.21107 1.29399 1.13565 0.90538 0.93020 1.24886 0.95281 0.94768 0.98644 1.69849 1.38920 1.20501 1.22952 0.86684 0.78839 0.80056 0.82813 1.20773 1.21359 1.20125 1.22154 0.98866 0.94352 0.89920 1.60583 1.16210 1.53819 1.01305 1.21985 1.00161 0.94943 0.90312 1.21607 1.00687 1.00087 0.92132 1.22551 1.00955 0.94860 0.95593 0.89850 1.23204 1.02063 0.98244 0.95307 1.23578 0.98468 0.87891 0.93259 1.88911 1.53369 1.59442 1.28323 1.23342 0.94724 0.96353 0.88499 0.96801 0.89978 0.96387 0.96394 0.90550 0.96238 0.93179 0.92667 0.96949 0.84504 0.91640 0.96094 0.91861 0.90705 0.90241 0.90196 0.92384 0.89190 0.89498 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 7.82 37.16 0.29 -2.87 16 2 C 0.07 1.65 0.57 -155.66 -0.09 1.56 16 3 C -0.12 -2.93 8.12 37.16 0.30 -2.63 16 4 C -0.51 -13.80 8.01 -34.44 -0.28 -14.07 16 5 H 0.05 1.40 7.75 -52.49 -0.41 1.00 16 6 C 0.07 1.78 5.10 -17.82 -0.09 1.69 16 7 N -0.88 -24.62 9.38 55.43 0.52 -24.10 16 8 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.08 1.60 4.59 -3.82 -0.02 1.58 16 13 N -0.69 -12.31 5.71 -113.77 -0.65 -12.96 16 14 C 0.06 0.80 5.51 -3.82 -0.02 0.78 16 15 C -0.11 -1.27 4.70 -26.73 -0.13 -1.40 16 16 C -0.12 -1.21 3.08 -89.09 -0.27 -1.48 16 17 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 18 C -0.15 -1.31 6.71 -24.72 -0.17 -1.47 16 19 C 0.04 0.40 7.72 38.21 0.29 0.69 16 20 O -0.38 -4.67 11.54 -35.23 -0.41 -5.08 16 21 C 0.05 0.52 6.92 37.73 0.26 0.78 16 22 H 0.01 0.28 6.84 -51.93 -0.36 -0.07 16 23 H 0.08 2.17 6.01 -51.93 -0.31 1.86 16 24 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.08 2.06 6.03 -51.93 -0.31 1.75 16 27 H 0.02 0.44 7.60 -51.93 -0.39 0.04 16 28 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.34 5.97 6.89 -39.29 -0.27 5.70 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.02 0.30 6.87 -51.93 -0.36 -0.06 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.71 7.87 -51.93 -0.41 0.30 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 1.01 6.70 -51.93 -0.35 0.66 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 314.90 15.07 4.75 4.75 Total: -1.00 -28.18 314.90 -8.10 -36.28 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -7.37 Total: 1.76 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: 0.09 Total: -16.83 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: -0.13 Total: -37.06 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.41 Total: -5.08 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.18 -8.10 -36.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459738830.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.533 kcal (2) G-P(sol) polarization free energy of solvation -28.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds