Wall clock time and date at job start Sun Mar 29 2020 23:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47210 * 2 1 4 4 H 1.09006 * 109.47177 * 304.24509 * 3 2 1 5 5 C 1.50701 * 109.47389 * 184.24758 * 3 2 1 6 6 H 1.08002 * 119.99520 * 245.41209 * 5 3 2 7 7 C 1.37874 * 120.00249 * 65.40522 * 5 3 2 8 8 N 1.31513 * 120.00046 * 193.88315 * 7 5 3 9 9 Si 1.86800 * 119.99743 * 13.88284 * 7 5 3 10 10 H 1.48501 * 109.47021 * 84.19453 * 9 7 5 11 11 H 1.48498 * 109.47077 * 204.18955 * 9 7 5 12 12 H 1.48496 * 109.47351 * 324.19568 * 9 7 5 13 13 N 1.46904 * 109.47315 * 64.24206 * 3 2 1 14 14 C 1.46900 * 111.00344 * 262.12511 * 13 3 2 15 15 C 1.52995 * 109.46960 * 175.26068 * 14 13 3 16 16 O 1.42905 * 109.47072 * 65.00169 * 15 14 13 17 17 C 1.42898 * 113.99660 * 179.97438 * 16 15 14 18 18 C 1.53000 * 109.46783 * 179.97438 * 17 16 15 19 19 C 1.53782 * 113.61510 * 85.86561 * 18 17 16 20 20 C 1.54053 * 86.98770 * 140.01694 * 19 18 17 21 21 C 1.53778 * 113.61542 * 183.47173 * 18 17 16 22 22 H 1.09000 * 109.47010 * 297.39927 * 1 2 3 23 23 H 1.09001 * 109.47339 * 57.39072 * 1 2 3 24 24 H 1.08991 * 109.47219 * 177.39856 * 1 2 3 25 25 H 1.08993 * 109.47135 * 240.00278 * 2 1 3 26 26 H 1.09001 * 109.47144 * 119.99719 * 2 1 3 27 27 H 0.97006 * 119.99867 * 180.02562 * 8 7 5 28 28 H 1.00900 * 110.99535 * 26.07835 * 13 3 2 29 29 H 1.08997 * 109.46955 * 55.26313 * 14 13 3 30 30 H 1.08998 * 109.46653 * 295.26486 * 14 13 3 31 31 H 1.08998 * 109.47488 * 304.99718 * 15 14 13 32 32 H 1.09003 * 109.46934 * 185.00249 * 15 14 13 33 33 H 1.08995 * 109.47325 * 60.00322 * 17 16 15 34 34 H 1.08997 * 109.47464 * 299.99819 * 17 16 15 35 35 H 1.08997 * 112.85202 * 314.66362 * 18 17 16 36 36 H 1.08994 * 113.61330 * 254.61225 * 19 18 17 37 37 H 1.09004 * 113.61494 * 25.51615 * 19 18 17 38 38 H 1.08997 * 113.62123 * 220.01824 * 20 19 18 39 39 H 1.09007 * 113.60856 * 89.11088 * 20 19 18 40 40 H 1.09007 * 113.61649 * 334.48506 * 21 18 17 41 41 H 1.09001 * 113.61949 * 105.30396 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6159 1.9779 -0.8496 5 6 3.5433 1.4439 -0.1052 6 1 4.1417 1.8124 0.7149 7 6 4.1548 0.9745 -1.2483 8 7 5.4447 0.7179 -1.2461 9 14 3.1512 0.7030 -2.8002 10 1 3.0299 1.9840 -3.5417 11 1 3.8279 -0.3029 -3.6577 12 1 1.7980 0.2124 -2.4352 13 7 1.6358 2.1049 1.2474 14 6 0.4221 2.9080 1.0477 15 6 -0.0340 3.4850 2.3893 16 8 0.9503 4.4012 2.8731 17 6 0.6196 5.0005 4.1275 18 6 1.7380 5.9568 4.5463 19 6 1.5928 7.3700 3.9576 20 6 2.0600 7.9002 5.3265 21 6 1.5190 6.5929 5.9291 22 1 -0.3633 0.4729 0.9124 23 1 -0.3634 0.5538 -0.8657 24 1 -0.3633 -1.0265 -0.0466 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 5.8750 0.3880 -2.0505 28 1 1.5065 1.4323 1.9884 29 1 -0.3666 2.2783 0.6360 30 1 0.6354 3.7225 0.3554 31 1 -0.1618 2.6758 3.1083 32 1 -0.9820 4.0066 2.2570 33 1 0.5052 4.2230 4.8827 34 1 -0.3146 5.5536 4.0309 35 1 2.7320 5.5291 4.4150 36 1 2.2898 7.5786 3.1460 37 1 0.5648 7.6378 3.7134 38 1 1.5225 8.7889 5.6573 39 1 3.1421 8.0037 5.4084 40 1 0.4708 6.6486 6.2231 41 1 2.1554 6.1737 6.7085 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519757572.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:05 Heat of formation + Delta-G solvation = -32.439944 kcal Electronic energy + Delta-G solvation = -17625.404556 eV Core-core repulsion = 14926.891029 eV Total energy + Delta-G solvation = -2698.513527 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.09620 -37.53152 -36.28923 -32.53670 -31.46851 -29.13739 -27.88910 -26.00056 -25.61663 -22.67399 -22.60686 -21.38752 -19.87644 -19.38840 -16.70049 -16.58614 -15.86695 -15.50358 -14.96819 -14.85438 -14.41461 -13.94398 -13.26124 -13.13554 -12.79128 -12.52742 -12.37608 -12.20885 -11.91537 -11.65671 -11.55941 -11.45703 -10.94059 -10.80238 -10.61240 -10.50757 -10.38953 -10.24131 -10.20890 -9.84949 -9.37960 -9.25259 -9.20423 -8.32077 -7.19056 -5.97606 -3.89445 3.33015 3.40917 3.43285 3.86381 4.50003 4.56542 4.63920 4.75408 4.87885 5.05958 5.28416 5.32360 5.37522 5.52358 5.57560 5.59210 5.62417 5.66718 5.75156 5.77888 5.81425 5.87376 5.89269 6.00305 6.03113 6.07001 6.21402 6.35726 6.47135 6.51934 6.61717 6.81322 6.92390 7.25297 7.54109 7.84272 8.04215 8.46239 8.81979 9.20532 9.68749 11.16226 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028311 B = 0.004859 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.778204 B = 5760.689911 C = 6359.196658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.156 4.156 3 C 0.192 3.808 4 H 0.023 0.977 5 C -0.494 4.494 6 H 0.080 0.920 7 C 0.069 3.931 8 N -0.898 5.898 9 Si 0.858 3.142 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.254 1.254 13 N -0.661 5.661 14 C 0.053 3.947 15 C 0.068 3.932 16 O -0.362 6.362 17 C 0.070 3.930 18 C -0.107 4.107 19 C -0.134 4.134 20 C -0.143 4.143 21 C -0.134 4.134 22 H 0.046 0.954 23 H 0.044 0.956 24 H 0.041 0.959 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.261 0.739 28 H 0.325 0.675 29 H 0.039 0.961 30 H 0.073 0.927 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.043 0.957 34 H 0.040 0.960 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.676 8.487 10.711 18.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.195 4.195 3 C 0.083 3.917 4 H 0.041 0.959 5 C -0.533 4.533 6 H 0.098 0.902 7 C -0.132 4.132 8 N -0.537 5.537 9 Si 0.686 3.314 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.178 1.178 13 N -0.291 5.291 14 C -0.076 4.076 15 C -0.010 4.010 16 O -0.280 6.280 17 C -0.007 4.007 18 C -0.126 4.126 19 C -0.171 4.171 20 C -0.180 4.180 21 C -0.172 4.172 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.142 0.858 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.120 0.880 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.920 9.004 10.404 18.205 hybrid contribution -1.401 -1.010 -0.922 1.958 sum -13.322 7.994 9.482 18.201 Atomic orbital electron populations 1.21988 0.98705 1.00130 1.00418 1.22715 0.92642 1.01954 1.02228 1.19555 0.96675 0.87886 0.87605 0.95926 1.21010 0.89000 1.40443 1.02816 0.90156 1.24907 0.94708 0.95006 0.98533 1.69960 1.10228 1.45136 1.28384 0.87355 0.81636 0.78104 0.84316 1.20596 1.21671 1.17842 1.60580 1.31192 1.28598 1.08780 1.22163 0.92841 0.97689 0.94947 1.22558 0.90578 0.91667 0.96159 1.88118 1.44709 1.59332 1.35858 1.22451 0.96593 0.95075 0.86601 1.22526 1.00158 0.94203 0.95664 1.22977 1.01559 0.95670 0.96914 1.22858 1.01058 0.97017 0.97108 1.22900 1.01260 0.96703 0.96312 0.93547 0.93648 0.94029 0.91712 0.92431 0.92887 0.85778 0.94360 0.90840 0.94049 0.94051 0.93879 0.94159 0.88010 0.91100 0.90441 0.91688 0.90108 0.90344 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 8.66 37.16 0.32 -2.35 16 2 C -0.16 -3.33 4.62 -26.73 -0.12 -3.45 16 3 C 0.19 4.55 1.79 -68.86 -0.12 4.43 16 4 H 0.02 0.56 6.42 -51.93 -0.33 0.23 16 5 C -0.49 -14.27 9.28 -34.44 -0.32 -14.59 16 6 H 0.08 2.59 8.06 -52.49 -0.42 2.17 16 7 C 0.07 2.03 5.36 -17.82 -0.10 1.94 16 8 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 9 Si 0.86 21.40 25.87 -169.99 -4.40 17.00 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.25 -5.87 5.35 56.52 0.30 -5.56 16 13 N -0.66 -13.90 6.04 -107.95 -0.65 -14.55 16 14 C 0.05 0.93 5.40 -3.83 -0.02 0.91 16 15 C 0.07 0.99 6.17 37.15 0.23 1.22 16 16 O -0.36 -6.01 10.29 -35.23 -0.36 -6.37 16 17 C 0.07 0.89 5.76 37.16 0.21 1.10 16 18 C -0.11 -1.28 4.00 -89.81 -0.36 -1.64 16 19 C -0.13 -1.47 7.65 -25.77 -0.20 -1.67 16 20 C -0.14 -1.31 8.09 -25.78 -0.21 -1.52 16 21 C -0.13 -1.25 7.64 -25.92 -0.20 -1.45 16 22 H 0.05 0.72 6.20 -51.93 -0.32 0.40 16 23 H 0.04 0.78 8.12 -51.93 -0.42 0.35 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 1.48 4.72 -51.93 -0.25 1.24 16 26 H 0.06 1.22 8.04 -51.93 -0.42 0.80 16 27 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 28 H 0.33 6.39 8.04 -39.29 -0.32 6.07 16 29 H 0.04 0.61 5.55 -51.93 -0.29 0.32 16 30 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 31 H 0.04 0.56 8.12 -51.93 -0.42 0.14 16 32 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.04 0.45 7.88 -51.93 -0.41 0.04 16 35 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.80 7.92 -51.93 -0.41 0.39 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.73 8.14 -51.92 -0.42 0.30 16 40 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 318.91 15.07 4.81 4.81 Total: -1.00 -31.23 318.91 -8.18 -39.41 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -7.47 Total: 4.00 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -0.88 Total: -17.08 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.12 Total: -41.77 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.36 Total: -6.37 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.40 Total: 17.00 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.23 -8.18 -39.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519757572.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.970 kcal (2) G-P(sol) polarization free energy of solvation -31.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds