Wall clock time and date at job start Sun Mar 29 2020 23:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47210 * 2 1 4 4 H 1.09006 * 109.47177 * 304.24509 * 3 2 1 5 5 C 1.50701 * 109.47389 * 184.24758 * 3 2 1 6 6 H 1.08002 * 119.99520 * 245.41209 * 5 3 2 7 7 C 1.37874 * 120.00249 * 65.40522 * 5 3 2 8 8 N 1.31513 * 120.00046 * 193.88315 * 7 5 3 9 9 Si 1.86800 * 119.99743 * 13.88284 * 7 5 3 10 10 H 1.48501 * 109.47021 * 84.19453 * 9 7 5 11 11 H 1.48498 * 109.47077 * 204.18955 * 9 7 5 12 12 H 1.48496 * 109.47351 * 324.19568 * 9 7 5 13 13 N 1.46904 * 109.47315 * 64.24206 * 3 2 1 14 14 C 1.46900 * 111.00344 * 262.12511 * 13 3 2 15 15 C 1.52995 * 109.46960 * 175.26068 * 14 13 3 16 16 O 1.42905 * 109.47072 * 65.00169 * 15 14 13 17 17 C 1.42898 * 113.99660 * 179.97438 * 16 15 14 18 18 C 1.53000 * 109.46783 * 179.97438 * 17 16 15 19 19 C 1.53782 * 113.61510 * 85.86561 * 18 17 16 20 20 C 1.54053 * 86.98770 * 140.01694 * 19 18 17 21 21 C 1.53778 * 113.61542 * 183.47173 * 18 17 16 22 22 H 1.09000 * 109.47010 * 297.39927 * 1 2 3 23 23 H 1.09001 * 109.47339 * 57.39072 * 1 2 3 24 24 H 1.08991 * 109.47219 * 177.39856 * 1 2 3 25 25 H 1.08993 * 109.47135 * 240.00278 * 2 1 3 26 26 H 1.09001 * 109.47144 * 119.99719 * 2 1 3 27 27 H 0.97006 * 119.99867 * 180.02562 * 8 7 5 28 28 H 1.00900 * 110.99535 * 26.07835 * 13 3 2 29 29 H 1.08997 * 109.46955 * 55.26313 * 14 13 3 30 30 H 1.08998 * 109.46653 * 295.26486 * 14 13 3 31 31 H 1.08998 * 109.47488 * 304.99718 * 15 14 13 32 32 H 1.09003 * 109.46934 * 185.00249 * 15 14 13 33 33 H 1.08995 * 109.47325 * 60.00322 * 17 16 15 34 34 H 1.08997 * 109.47464 * 299.99819 * 17 16 15 35 35 H 1.08997 * 112.85202 * 314.66362 * 18 17 16 36 36 H 1.08994 * 113.61330 * 254.61225 * 19 18 17 37 37 H 1.09004 * 113.61494 * 25.51615 * 19 18 17 38 38 H 1.08997 * 113.62123 * 220.01824 * 20 19 18 39 39 H 1.09007 * 113.60856 * 89.11088 * 20 19 18 40 40 H 1.09007 * 113.61649 * 334.48506 * 21 18 17 41 41 H 1.09001 * 113.61949 * 105.30396 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6159 1.9779 -0.8496 5 6 3.5433 1.4439 -0.1052 6 1 4.1417 1.8124 0.7149 7 6 4.1548 0.9745 -1.2483 8 7 5.4447 0.7179 -1.2461 9 14 3.1512 0.7030 -2.8002 10 1 3.0299 1.9840 -3.5417 11 1 3.8279 -0.3029 -3.6577 12 1 1.7980 0.2124 -2.4352 13 7 1.6358 2.1049 1.2474 14 6 0.4221 2.9080 1.0477 15 6 -0.0340 3.4850 2.3893 16 8 0.9503 4.4012 2.8731 17 6 0.6196 5.0005 4.1275 18 6 1.7380 5.9568 4.5463 19 6 1.5928 7.3700 3.9576 20 6 2.0600 7.9002 5.3265 21 6 1.5190 6.5929 5.9291 22 1 -0.3633 0.4729 0.9124 23 1 -0.3634 0.5538 -0.8657 24 1 -0.3633 -1.0265 -0.0466 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 5.8750 0.3880 -2.0505 28 1 1.5065 1.4323 1.9884 29 1 -0.3666 2.2783 0.6360 30 1 0.6354 3.7225 0.3554 31 1 -0.1618 2.6758 3.1083 32 1 -0.9820 4.0066 2.2570 33 1 0.5052 4.2230 4.8827 34 1 -0.3146 5.5536 4.0309 35 1 2.7320 5.5291 4.4150 36 1 2.2898 7.5786 3.1460 37 1 0.5648 7.6378 3.7134 38 1 1.5225 8.7889 5.6573 39 1 3.1421 8.0037 5.4084 40 1 0.4708 6.6486 6.2231 41 1 2.1554 6.1737 6.7085 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519757572.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:05 Heat of formation + Delta-G solvation = -54.033547 kcal Electronic energy + Delta-G solvation = -17626.340925 eV Core-core repulsion = 14926.891029 eV Total energy + Delta-G solvation = -2699.449896 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.02154 -38.88790 -37.70832 -34.54901 -33.11164 -30.51105 -29.22324 -27.61158 -26.44243 -24.37340 -23.53824 -22.77717 -21.68992 -20.25406 -18.80307 -17.74516 -17.06662 -16.74711 -16.48169 -16.02053 -15.77441 -15.54861 -14.81919 -14.57211 -14.29117 -13.71195 -13.62164 -13.42054 -13.29971 -13.15498 -12.85169 -12.63977 -12.52785 -12.36096 -12.21272 -11.83736 -11.62157 -11.40479 -11.30282 -11.21823 -11.12297 -11.09338 -10.53067 -10.36997 -8.83487 -8.24634 -6.22027 1.34735 1.37946 1.46443 2.37986 2.83440 3.08484 3.58493 3.73156 3.80439 3.91348 4.01223 4.24132 4.30102 4.33117 4.38046 4.45347 4.51599 4.59470 4.60464 4.64393 4.75723 4.82904 4.85815 4.87889 4.99375 5.03644 5.09399 5.11442 5.16110 5.19543 5.26748 5.38095 5.54820 5.61622 5.75851 6.09340 6.48101 6.78963 6.83478 6.88420 7.41307 8.93402 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028311 B = 0.004859 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.778204 B = 5760.689911 C = 6359.196658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.153 4.153 3 C 0.198 3.802 4 H 0.021 0.979 5 C -0.506 4.506 6 H 0.025 0.975 7 C 0.010 3.990 8 N -0.951 5.951 9 Si 0.929 3.071 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.220 1.220 13 N -0.681 5.681 14 C 0.054 3.946 15 C 0.070 3.930 16 O -0.400 6.400 17 C 0.068 3.932 18 C -0.121 4.121 19 C -0.138 4.138 20 C -0.137 4.137 21 C -0.122 4.122 22 H 0.064 0.936 23 H 0.050 0.950 24 H 0.064 0.936 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.263 0.737 28 H 0.332 0.668 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.216 8.583 10.965 21.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.192 4.192 3 C 0.088 3.912 4 H 0.039 0.961 5 C -0.544 4.544 6 H 0.043 0.957 7 C -0.187 4.187 8 N -0.592 5.592 9 Si 0.753 3.247 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.142 1.142 13 N -0.312 5.312 14 C -0.075 4.075 15 C -0.007 4.007 16 O -0.320 6.320 17 C -0.008 4.008 18 C -0.140 4.140 19 C -0.175 4.175 20 C -0.174 4.174 21 C -0.159 4.159 22 H 0.083 0.917 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.150 0.850 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.493 9.108 10.687 20.909 hybrid contribution -0.213 -0.983 -0.894 1.345 sum -15.706 8.125 9.793 20.214 Atomic orbital electron populations 1.21896 0.94793 1.02062 1.01641 1.22532 0.96060 0.99355 1.01254 1.19329 0.93100 0.89924 0.88828 0.96102 1.21334 0.91962 1.39781 1.01350 0.95655 1.25815 0.95831 0.94738 1.02279 1.70127 1.12590 1.46943 1.29512 0.86215 0.81454 0.78049 0.79012 1.20429 1.21520 1.14238 1.60360 1.34118 1.28907 1.07856 1.22215 0.91833 0.96872 0.96609 1.22586 0.91128 0.92175 0.94814 1.88074 1.46220 1.60040 1.37678 1.22622 0.97493 0.95395 0.85301 1.22584 0.98699 0.94586 0.98127 1.23025 1.01803 0.95374 0.97345 1.22839 1.01179 0.97776 0.95615 1.22878 1.02467 0.95855 0.94721 0.91750 0.93072 0.91732 0.93246 0.93016 0.92808 0.84993 0.91920 0.92747 0.92708 0.90990 0.93128 0.92102 0.90913 0.93016 0.89347 0.89844 0.90384 0.88520 0.90888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.44 8.66 71.98 0.62 -3.82 16 2 C -0.15 -6.22 4.62 30.59 0.14 -6.08 16 3 C 0.20 9.32 1.79 44.17 0.08 9.40 16 4 H 0.02 1.00 6.42 -2.38 -0.02 0.99 16 5 C -0.51 -30.31 9.28 25.60 0.24 -30.08 16 6 H 0.03 1.74 8.06 -2.91 -0.02 1.71 16 7 C 0.01 0.59 5.36 84.65 0.45 1.04 16 8 N -0.95 -61.62 13.96 21.45 0.30 -61.32 16 9 Si 0.93 44.39 25.87 68.60 1.77 46.17 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 12 H -0.22 -9.23 5.35 99.48 0.53 -8.70 16 13 N -0.68 -28.42 6.04 -495.44 -2.99 -31.41 16 14 C 0.05 1.77 5.40 86.30 0.47 2.24 16 15 C 0.07 1.88 6.17 71.98 0.44 2.32 16 16 O -0.40 -13.03 10.29 -148.98 -1.53 -14.56 16 17 C 0.07 1.64 5.76 71.98 0.41 2.05 16 18 C -0.12 -2.87 4.00 -10.27 -0.04 -2.91 16 19 C -0.14 -2.96 7.65 31.21 0.24 -2.72 16 20 C -0.14 -2.32 8.09 31.21 0.25 -2.06 16 21 C -0.12 -2.05 7.64 31.12 0.24 -1.82 16 22 H 0.06 1.71 6.20 -2.39 -0.01 1.70 16 23 H 0.05 1.50 8.12 -2.39 -0.02 1.48 16 24 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.05 2.14 4.72 -2.39 -0.01 2.13 16 26 H 0.05 2.13 8.04 -2.39 -0.02 2.11 16 27 H 0.26 15.94 8.31 -92.70 -0.77 15.17 16 28 H 0.33 12.83 8.04 -89.69 -0.72 12.11 16 29 H 0.06 1.77 5.55 -2.39 -0.01 1.75 16 30 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.05 1.33 8.12 -2.39 -0.02 1.31 16 32 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 1.20 7.88 -2.39 -0.02 1.18 16 35 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.09 1.68 7.92 -2.38 -0.02 1.66 16 38 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 40 H 0.10 1.30 8.10 -2.38 -0.02 1.28 16 41 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -71.13 318.91 1.18 -69.95 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 0.09 Total: 23.61 kcal Atomic # 6 Polarization: -35.98 SS G_CDS: 3.55 Total: -32.43 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -2.69 Total: -92.73 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -1.53 Total: -14.56 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.77 Total: 46.17 kcal Total: -71.13 1.18 -69.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519757572.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.913 kcal (2) G-P(sol) polarization free energy of solvation -71.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds