Wall clock time and date at job start Sun Mar 29 2020 23:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47041 * 2 1 4 4 H 1.09007 * 109.47186 * 185.16173 * 3 2 1 5 5 C 1.50700 * 109.47215 * 305.16169 * 3 2 1 6 6 H 1.08007 * 120.00008 * 120.00432 * 5 3 2 7 7 C 1.37874 * 120.00267 * 300.00017 * 5 3 2 8 8 N 1.31516 * 119.99727 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00260 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47434 * 90.00149 * 9 7 5 11 11 H 1.48503 * 109.47224 * 209.99767 * 9 7 5 12 12 H 1.48500 * 109.47373 * 330.00089 * 9 7 5 13 13 N 1.46903 * 109.47148 * 65.16244 * 3 2 1 14 14 C 1.46898 * 110.99971 * 85.91714 * 13 3 2 15 15 C 1.53004 * 109.47125 * 174.67835 * 14 13 3 16 16 O 1.42895 * 109.47268 * 64.99570 * 15 14 13 17 17 C 1.42900 * 114.00015 * 179.97438 * 16 15 14 18 18 C 1.52999 * 109.47024 * 180.02562 * 17 16 15 19 19 C 1.53785 * 113.61469 * 85.86533 * 18 17 16 20 20 C 1.54054 * 86.98299 * 140.01516 * 19 18 17 21 21 C 1.53774 * 87.08149 * 334.57024 * 20 19 18 22 22 H 1.08994 * 109.47480 * 174.84678 * 1 2 3 23 23 H 1.08999 * 109.46769 * 294.85172 * 1 2 3 24 24 H 1.09004 * 109.47052 * 54.84787 * 1 2 3 25 25 H 1.08998 * 109.47091 * 240.00371 * 2 1 3 26 26 H 1.08991 * 109.47299 * 119.99878 * 2 1 3 27 27 H 0.97006 * 120.00054 * 180.02562 * 8 7 5 28 28 H 1.00897 * 110.99609 * 321.95876 * 13 3 2 29 29 H 1.09000 * 109.47165 * 54.67154 * 14 13 3 30 30 H 1.09002 * 109.46938 * 294.67637 * 14 13 3 31 31 H 1.09000 * 109.46803 * 304.99883 * 15 14 13 32 32 H 1.08996 * 109.46590 * 184.99888 * 15 14 13 33 33 H 1.09000 * 109.46960 * 60.00426 * 17 16 15 34 34 H 1.08996 * 109.47347 * 300.00535 * 17 16 15 35 35 H 1.09003 * 112.85317 * 314.67051 * 18 17 16 36 36 H 1.09000 * 113.61609 * 254.61197 * 19 18 17 37 37 H 1.08998 * 113.60978 * 25.51905 * 19 18 17 38 38 H 1.08996 * 113.62033 * 220.01465 * 20 19 18 39 39 H 1.09005 * 113.60727 * 89.12038 * 20 19 18 40 40 H 1.09002 * 113.61626 * 270.88146 * 21 20 19 41 41 H 1.08998 * 113.68952 * 139.98313 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1262 1.4439 -0.0925 5 6 1.4360 2.1889 -1.1616 6 1 0.8269 3.0629 -0.9839 7 6 1.6611 1.7561 -2.4511 8 7 2.4024 0.6916 -2.6675 9 14 0.9130 2.6816 -3.8909 10 1 1.8552 3.7359 -4.3450 11 1 0.6535 1.7360 -5.0062 12 1 -0.3643 3.3088 -3.4663 13 7 1.6547 2.0981 1.2569 14 6 2.6435 1.8370 2.3115 15 6 2.2799 2.6405 3.5618 16 8 1.0360 2.1705 4.0850 17 6 0.6031 2.8578 5.2606 18 6 -0.7310 2.2744 5.7303 19 6 -0.5791 1.0433 6.6393 20 6 -1.7378 1.6189 7.4755 21 6 -1.3283 3.0032 6.9457 22 1 -0.3634 -1.0234 -0.0923 23 1 -0.3633 0.4319 0.9325 24 1 -0.3633 0.5917 -0.8403 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 2.5611 0.3872 -3.5748 28 1 0.7322 1.8102 1.5468 29 1 3.6328 2.1341 1.9635 30 1 2.6469 0.7737 2.5511 31 1 2.1895 3.6953 3.3022 32 1 3.0601 2.5166 4.3127 33 1 0.4780 3.9172 5.0368 34 1 1.3485 2.7382 6.0468 35 1 -1.4405 2.1305 4.9154 36 1 -0.8210 0.1026 6.1445 37 1 0.3703 1.0097 7.1737 38 1 -1.5994 1.5043 8.5506 39 1 -2.7225 1.2958 7.1377 40 1 -0.5833 3.5044 7.5637 41 1 -2.1738 3.6449 6.6978 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519757577.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:07 Heat of formation + Delta-G solvation = -42.604617 kcal Electronic energy + Delta-G solvation = -17677.730075 eV Core-core repulsion = 14978.775775 eV Total energy + Delta-G solvation = -2698.954301 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.16186 -37.43093 -36.04427 -32.67213 -30.88030 -28.86761 -27.35924 -25.74328 -25.50928 -23.15018 -22.71350 -21.46693 -19.47470 -19.21233 -16.54987 -16.08412 -15.85611 -15.46468 -15.12844 -14.65994 -14.32024 -13.68570 -13.18702 -12.93887 -12.59912 -12.55053 -12.25114 -12.05728 -11.90076 -11.40756 -11.32774 -11.09411 -10.84737 -10.62259 -10.56166 -10.43674 -10.38350 -10.27490 -9.87820 -9.68474 -9.46005 -9.29599 -8.89152 -8.27766 -7.08564 -5.91085 -3.92149 3.36701 3.42983 3.47296 3.84217 4.49450 4.49792 4.56562 4.68558 4.82899 5.25943 5.32077 5.36578 5.40412 5.53135 5.56842 5.58915 5.66062 5.74281 5.76011 5.80664 5.92965 6.00963 6.12743 6.30555 6.39827 6.43411 6.47239 6.49569 6.67374 7.02253 7.37794 7.38250 7.49866 7.61409 7.79407 7.96701 8.37618 8.69069 8.73841 9.13931 9.71239 11.16002 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034976 B = 0.004386 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.354974 B = 6382.732263 C = 6453.584338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.144 4.144 3 C 0.213 3.787 4 H 0.030 0.970 5 C -0.486 4.486 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.683 5.683 14 C 0.062 3.938 15 C 0.067 3.933 16 O -0.383 6.383 17 C 0.073 3.927 18 C -0.108 4.108 19 C -0.134 4.134 20 C -0.143 4.143 21 C -0.134 4.134 22 H 0.022 0.978 23 H 0.029 0.971 24 H 0.067 0.933 25 H 0.091 0.909 26 H 0.010 0.990 27 H 0.258 0.742 28 H 0.334 0.666 29 H 0.076 0.924 30 H 0.024 0.976 31 H 0.054 0.946 32 H 0.040 0.960 33 H 0.046 0.954 34 H 0.042 0.958 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.262 1.975 17.362 17.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.184 4.184 3 C 0.105 3.895 4 H 0.048 0.952 5 C -0.525 4.525 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.314 5.314 14 C -0.068 4.068 15 C -0.010 4.010 16 O -0.302 6.302 17 C -0.004 4.004 18 C -0.127 4.127 19 C -0.171 4.171 20 C -0.181 4.181 21 C -0.171 4.171 22 H 0.041 0.959 23 H 0.048 0.952 24 H 0.086 0.914 25 H 0.109 0.891 26 H 0.029 0.971 27 H 0.068 0.932 28 H 0.153 0.847 29 H 0.094 0.906 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.018 2.331 16.948 17.573 hybrid contribution -0.303 -0.328 -0.527 0.690 sum -4.321 2.003 16.422 17.099 Atomic orbital electron populations 1.21589 0.97697 0.98541 1.00868 1.22080 0.95072 1.01130 1.00076 1.19227 0.95772 0.88677 0.85797 0.95182 1.21088 1.30301 1.11359 0.89709 0.92086 1.24918 0.95649 0.95185 0.98711 1.69892 1.39260 1.24022 1.20552 0.86578 0.79608 0.79509 0.82170 1.20884 1.21504 1.19956 1.60809 1.04335 1.62949 1.03358 1.21897 0.97424 0.96740 0.90778 1.22657 0.84779 0.98759 0.94793 1.87908 1.39224 1.60360 1.42696 1.22427 0.94880 0.95605 0.87469 1.22542 0.96646 0.96748 0.96732 1.22985 0.98496 0.98107 0.97548 1.22859 0.98955 0.96636 0.99602 1.22895 1.00591 0.96668 0.96977 0.95915 0.95161 0.91357 0.89077 0.97127 0.93213 0.84695 0.90564 0.95807 0.92735 0.94209 0.93558 0.93965 0.88261 0.91274 0.90329 0.91614 0.90165 0.90205 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 9.40 37.16 0.35 -2.56 16 2 C -0.14 -3.51 5.51 -26.73 -0.15 -3.66 16 3 C 0.21 5.43 2.33 -68.86 -0.16 5.27 16 4 H 0.03 0.84 7.70 -51.92 -0.40 0.44 16 5 C -0.49 -13.45 7.25 -34.44 -0.25 -13.70 16 6 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 7 C 0.06 1.54 5.28 -17.82 -0.09 1.45 16 8 N -0.90 -25.75 11.38 55.43 0.63 -25.12 16 9 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.68 -15.17 6.21 -107.94 -0.67 -15.84 16 14 C 0.06 1.16 5.92 -3.82 -0.02 1.14 16 15 C 0.07 1.05 6.28 37.16 0.23 1.28 16 16 O -0.38 -6.16 9.96 -35.23 -0.35 -6.51 16 17 C 0.07 0.91 5.76 37.16 0.21 1.12 16 18 C -0.11 -1.21 4.00 -89.80 -0.36 -1.57 16 19 C -0.13 -1.36 7.65 -25.77 -0.20 -1.56 16 20 C -0.14 -1.22 8.09 -25.78 -0.21 -1.43 16 21 C -0.13 -1.18 7.64 -25.92 -0.20 -1.38 16 22 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.03 0.63 6.63 -51.93 -0.34 0.28 16 24 H 0.07 1.66 6.85 -51.93 -0.36 1.31 16 25 H 0.09 2.47 6.22 -51.93 -0.32 2.14 16 26 H 0.01 0.23 7.50 -51.93 -0.39 -0.16 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.33 7.41 6.33 -39.29 -0.25 7.16 16 29 H 0.08 1.41 7.92 -51.93 -0.41 0.99 16 30 H 0.02 0.46 7.54 -51.93 -0.39 0.07 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.04 0.47 7.87 -51.93 -0.41 0.06 16 35 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.77 7.92 -51.93 -0.41 0.35 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 323.54 15.07 4.88 4.88 Total: -1.00 -28.67 323.54 -8.83 -37.50 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -7.46 Total: 4.03 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -0.84 Total: -15.59 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: -0.04 Total: -40.96 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.35 Total: -6.51 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.67 -8.83 -37.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519757577.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.107 kcal (2) G-P(sol) polarization free energy of solvation -28.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds