Wall clock time and date at job start Sun Mar 29 2020 23:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47198 * 2 1 4 4 H 1.09000 * 109.46870 * 305.09414 * 3 2 1 5 5 C 1.50701 * 109.46985 * 185.09680 * 3 2 1 6 6 H 1.08004 * 119.99307 * 239.99925 * 5 3 2 7 7 C 1.37872 * 120.00332 * 59.99721 * 5 3 2 8 8 N 1.31515 * 120.00060 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 119.99997 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.47369 * 270.00378 * 9 7 5 11 11 H 1.48505 * 109.46938 * 30.00429 * 9 7 5 12 12 H 1.48500 * 109.46780 * 149.99846 * 9 7 5 13 13 N 1.46899 * 109.47208 * 65.09405 * 3 2 1 14 14 C 1.46897 * 110.99715 * 204.27185 * 13 3 2 15 15 H 1.08997 * 109.54417 * 325.78587 * 14 13 3 16 16 C 1.53171 * 109.54751 * 86.06107 * 14 13 3 17 17 C 1.53092 * 109.16794 * 176.84545 * 16 14 13 18 18 H 1.09006 * 109.47788 * 62.36973 * 17 16 14 19 19 C 1.52990 * 109.49256 * 182.39980 * 17 16 14 20 20 O 1.42898 * 109.41406 * 302.39164 * 17 16 14 21 21 C 1.42909 * 114.09941 * 61.15565 * 20 17 16 22 22 H 1.08992 * 109.48073 * 58.82420 * 21 20 17 23 23 C 1.53002 * 109.49016 * 178.85723 * 21 20 17 24 24 C 1.53094 * 109.41300 * 298.84103 * 21 20 17 25 25 H 1.09008 * 109.47097 * 54.92656 * 1 2 3 26 26 H 1.08995 * 109.47127 * 174.92649 * 1 2 3 27 27 H 1.09001 * 109.47322 * 294.93019 * 1 2 3 28 28 H 1.08997 * 109.47791 * 239.99506 * 2 1 3 29 29 H 1.09004 * 109.47107 * 119.99396 * 2 1 3 30 30 H 0.96996 * 119.99927 * 180.02562 * 8 7 5 31 31 H 1.00898 * 110.99857 * 80.31574 * 13 3 2 32 32 H 1.09003 * 109.51978 * 296.75322 * 16 14 13 33 33 H 1.09004 * 109.52613 * 56.93802 * 16 14 13 34 34 H 1.09004 * 109.47421 * 179.97438 * 19 17 16 35 35 H 1.09001 * 109.47942 * 299.94880 * 19 17 16 36 36 H 1.09000 * 109.47334 * 59.94868 * 19 17 16 37 37 H 1.09000 * 109.46974 * 179.97438 * 23 21 20 38 38 H 1.09006 * 109.46654 * 299.94275 * 23 21 20 39 39 H 1.08997 * 109.47650 * 59.94485 * 23 21 20 40 40 H 1.08997 * 109.52597 * 297.70536 * 24 21 20 41 41 H 1.08998 * 109.52514 * 177.51335 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6041 1.9820 -0.8409 5 6 3.5417 1.4444 -0.1262 6 1 4.1482 1.8886 0.6493 7 6 4.1414 0.8791 -1.2315 8 7 5.4519 0.8802 -1.3414 9 14 3.0924 0.1102 -2.5724 10 1 2.8719 -1.3261 -2.2661 11 1 1.7835 0.8087 -2.6387 12 1 3.7876 0.2368 -3.8785 13 7 1.6533 2.0987 1.2562 14 6 1.5911 3.5570 1.0909 15 1 2.3576 3.8770 0.3851 16 6 0.2088 3.9545 0.5642 17 6 0.1265 5.4803 0.4700 18 1 0.8684 5.8410 -0.2426 19 6 -1.2716 5.8882 0.0015 20 8 0.3837 6.0501 1.7550 21 6 1.6801 5.7513 2.2769 22 1 2.4421 6.1155 1.5880 23 6 1.8529 6.4331 3.6357 24 6 1.8247 4.2364 2.4438 25 1 -0.3634 0.5906 -0.8411 26 1 -0.3633 -1.0236 -0.0909 27 1 -0.3634 0.4332 0.9319 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.8737 0.4828 -2.1192 31 1 2.2814 1.8460 2.0043 32 1 0.0566 3.5198 -0.4237 33 1 -0.5595 3.5898 1.2460 34 1 -1.3300 6.9747 -0.0651 35 1 -1.4677 5.4536 -0.9787 36 1 -2.0133 5.5272 0.7140 37 1 2.8416 6.2046 4.0337 38 1 1.7499 7.5117 3.5167 39 1 1.0905 6.0691 4.3245 40 1 1.0890 3.8773 3.1635 41 1 2.8281 4.0033 2.8000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000560119028.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:23 Heat of formation + Delta-G solvation = -66.370645 kcal Electronic energy + Delta-G solvation = -18656.848042 eV Core-core repulsion = 15956.863170 eV Total energy + Delta-G solvation = -2699.984873 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.43925 -36.48178 -33.56236 -33.40297 -31.93316 -30.40042 -28.61561 -26.41853 -26.10949 -22.66006 -21.67805 -21.44685 -19.77978 -19.70356 -16.98002 -16.28038 -15.47233 -15.12033 -14.69439 -14.61747 -13.99121 -13.53344 -13.23433 -12.86156 -12.63095 -12.43401 -12.24951 -12.00832 -11.91557 -11.76388 -11.62487 -11.51326 -11.34230 -10.87441 -10.69765 -10.67074 -10.42263 -10.17407 -9.89167 -9.76391 -9.48978 -9.29750 -9.08479 -8.59824 -7.37478 -6.15532 -4.16466 3.23659 3.34109 3.36439 3.85782 4.34471 4.80649 4.96004 5.13350 5.17695 5.29648 5.33026 5.39109 5.58011 5.65958 5.68664 5.73810 5.87551 5.91155 6.00166 6.04240 6.08598 6.14872 6.18339 6.22759 6.26162 6.29435 6.44944 6.52792 6.68450 6.73216 6.78123 6.98103 7.10729 7.26469 7.50619 7.55869 8.04007 8.37748 8.47204 8.86883 9.48255 10.97409 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024947 B = 0.007212 C = 0.006612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.104272 B = 3881.748277 C = 4233.588240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C 0.184 3.816 4 H 0.032 0.968 5 C -0.546 4.546 6 H 0.071 0.929 7 C 0.073 3.927 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.265 1.265 12 H -0.298 1.298 13 N -0.675 5.675 14 C 0.090 3.910 15 H 0.051 0.949 16 C -0.132 4.132 17 C 0.086 3.914 18 H 0.054 0.946 19 C -0.141 4.141 20 O -0.382 6.382 21 C 0.090 3.910 22 H 0.055 0.945 23 C -0.141 4.141 24 C -0.148 4.148 25 H 0.039 0.961 26 H 0.031 0.969 27 H 0.060 0.940 28 H 0.044 0.956 29 H 0.057 0.943 30 H 0.264 0.736 31 H 0.335 0.665 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.133 7.801 4.954 13.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.154 4.154 3 C 0.075 3.925 4 H 0.050 0.950 5 C -0.585 4.585 6 H 0.089 0.911 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.204 1.204 11 H -0.190 1.190 12 H -0.226 1.226 13 N -0.305 5.305 14 C -0.021 4.021 15 H 0.069 0.931 16 C -0.171 4.171 17 C 0.028 3.972 18 H 0.072 0.928 19 C -0.198 4.198 20 O -0.302 6.302 21 C 0.032 3.968 22 H 0.073 0.927 23 C -0.199 4.199 24 C -0.186 4.186 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.152 0.848 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.791 7.761 4.838 14.145 hybrid contribution 0.909 -0.577 -1.066 1.515 sum -9.882 7.185 3.772 12.787 Atomic orbital electron populations 1.21714 0.97542 0.99076 1.01515 1.21815 0.93852 0.99403 1.00331 1.19608 0.94115 0.90530 0.88291 0.95049 1.21759 0.90611 1.39051 1.07076 0.91052 1.25011 0.94769 0.95293 0.97952 1.69917 1.08908 1.45067 1.29688 0.86815 0.80599 0.79903 0.80684 1.20447 1.18970 1.22614 1.60783 1.55856 1.05178 1.08644 1.21365 0.95730 0.89723 0.95249 0.93092 1.22213 0.98563 0.94197 1.02121 1.22090 0.97075 0.93193 0.84822 0.92821 1.21730 0.95408 1.01553 1.01107 1.87839 1.33800 1.74186 1.34374 1.22019 0.85141 0.94328 0.95350 0.92683 1.21744 1.02039 1.00593 0.95497 1.22393 1.02381 0.95102 0.98710 0.94196 0.94943 0.92051 0.93806 0.92450 0.92639 0.84808 0.91364 0.91008 0.92323 0.91260 0.91972 0.91213 0.92252 0.91975 0.90836 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.74 37.16 0.36 -2.23 16 2 C -0.12 -2.52 5.11 -26.73 -0.14 -2.66 16 3 C 0.18 4.23 1.39 -68.86 -0.10 4.13 16 4 H 0.03 0.77 6.29 -51.93 -0.33 0.44 16 5 C -0.55 -14.91 8.81 -34.44 -0.30 -15.21 16 6 H 0.07 2.11 8.00 -52.48 -0.42 1.69 16 7 C 0.07 2.06 5.45 -17.82 -0.10 1.97 16 8 N -0.90 -27.20 13.96 55.43 0.77 -26.43 16 9 Si 0.89 21.97 24.41 -169.99 -4.15 17.82 16 10 H -0.28 -6.71 6.83 56.52 0.39 -6.32 16 11 H -0.26 -6.28 6.53 56.52 0.37 -5.91 16 12 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 13 N -0.68 -13.34 5.61 -100.76 -0.56 -13.90 16 14 C 0.09 1.62 2.38 -67.53 -0.16 1.46 16 15 H 0.05 1.06 7.61 -51.93 -0.39 0.67 16 16 C -0.13 -2.15 4.91 -26.60 -0.13 -2.28 16 17 C 0.09 1.25 3.26 -26.69 -0.09 1.17 16 18 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 19 C -0.14 -1.68 9.56 37.15 0.36 -1.33 16 20 O -0.38 -5.80 10.05 -35.23 -0.35 -6.15 16 21 C 0.09 1.27 3.26 -26.68 -0.09 1.19 16 22 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 23 C -0.14 -1.63 9.57 37.16 0.36 -1.27 16 24 C -0.15 -2.27 4.68 -26.59 -0.12 -2.39 16 25 H 0.04 0.72 8.14 -51.92 -0.42 0.30 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 1.08 7.90 -51.93 -0.41 0.67 16 28 H 0.04 1.02 3.21 -51.93 -0.17 0.85 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.33 6.66 8.06 -39.29 -0.32 6.35 16 32 H 0.07 1.16 7.55 -51.93 -0.39 0.77 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 313.52 15.07 4.72 4.72 Total: -1.00 -29.08 313.52 -7.25 -36.33 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -7.53 Total: 5.08 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -0.15 Total: -17.47 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.21 Total: -40.33 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.35 Total: -6.15 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.15 Total: 17.82 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.08 -7.25 -36.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000560119028.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.039 kcal (2) G-P(sol) polarization free energy of solvation -29.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds