Wall clock time and date at job start Sun Mar 29 2020 23:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47138 * 2 1 4 4 H 1.08998 * 109.47375 * 54.86534 * 3 2 1 5 5 C 1.50705 * 109.46984 * 174.85799 * 3 2 1 6 6 H 1.08004 * 119.99598 * 119.99887 * 5 3 2 7 7 C 1.37880 * 120.00284 * 300.00434 * 5 3 2 8 8 N 1.31510 * 119.99562 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00010 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46915 * 269.99997 * 9 7 5 11 11 H 1.48498 * 109.46948 * 29.99797 * 9 7 5 12 12 H 1.48502 * 109.46933 * 149.99831 * 9 7 5 13 13 N 1.46892 * 109.47426 * 294.85765 * 3 2 1 14 14 C 1.46903 * 111.00281 * 151.47809 * 13 3 2 15 15 H 1.09010 * 109.54137 * 327.89769 * 14 13 3 16 16 C 1.53174 * 109.54368 * 88.06725 * 14 13 3 17 17 C 1.53104 * 109.15855 * 176.76310 * 16 14 13 18 18 H 1.08997 * 109.40511 * 62.50972 * 17 16 14 19 19 C 1.52997 * 109.49400 * 182.49434 * 17 16 14 20 20 O 1.42910 * 109.48620 * 302.53002 * 17 16 14 21 21 C 1.42903 * 114.09739 * 61.10971 * 20 17 16 22 22 H 1.08996 * 109.48885 * 58.83039 * 21 20 17 23 23 C 1.52999 * 109.47578 * 178.86205 * 21 20 17 24 24 C 1.53092 * 109.41544 * 298.84053 * 21 20 17 25 25 H 1.09005 * 109.47037 * 55.31617 * 1 2 3 26 26 H 1.08998 * 109.47420 * 175.31623 * 1 2 3 27 27 H 1.08992 * 109.46849 * 295.32134 * 1 2 3 28 28 H 1.09005 * 109.46905 * 239.99825 * 2 1 3 29 29 H 1.08998 * 109.47111 * 120.00738 * 2 1 3 30 30 H 0.97000 * 119.99363 * 179.97438 * 8 7 5 31 31 H 1.00896 * 111.00706 * 275.43457 * 13 3 2 32 32 H 1.08996 * 109.52462 * 296.75872 * 16 14 13 33 33 H 1.09007 * 109.52005 * 56.94731 * 16 14 13 34 34 H 1.09004 * 109.47343 * 180.02562 * 19 17 16 35 35 H 1.08996 * 109.47378 * 300.03809 * 19 17 16 36 36 H 1.09007 * 109.47258 * 60.03937 * 19 17 16 37 37 H 1.09003 * 109.46656 * 179.97438 * 23 21 20 38 38 H 1.09004 * 109.47284 * 299.93696 * 23 21 20 39 39 H 1.08998 * 109.47789 * 59.94527 * 23 21 20 40 40 H 1.08996 * 109.52492 * 297.70559 * 24 21 20 41 41 H 1.08998 * 109.57596 * 177.54613 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6036 1.9822 0.8404 5 6 3.5417 1.4443 0.1273 6 1 4.1488 1.8883 -0.6478 7 6 4.1405 0.8792 1.2333 8 7 3.4012 0.3391 2.1773 9 14 6.0019 0.8810 1.3907 10 1 6.5521 -0.3516 0.7716 11 1 6.5560 2.0723 0.6988 12 1 6.3771 0.9235 2.8269 13 7 1.6544 2.0982 -1.2566 14 6 1.4939 3.5461 -1.0672 15 1 1.1355 3.7442 -0.0569 16 6 2.8414 4.2430 -1.2786 17 6 2.6482 5.7571 -1.1591 18 1 2.3058 6.0003 -0.1533 19 6 3.9775 6.4644 -1.4305 20 8 1.6748 6.1902 -2.1116 21 6 0.3826 5.6071 -1.9315 22 1 0.0104 5.8483 -0.9359 23 6 -0.5788 6.1624 -2.9842 24 6 0.4843 4.0872 -2.0843 25 1 -0.3633 0.5848 -0.8451 26 1 -0.3634 -1.0242 -0.0839 27 1 -0.3633 0.4395 0.9289 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8225 -0.0588 2.9552 31 1 2.3218 1.9010 -1.9871 32 1 3.5494 3.9040 -0.5224 33 1 3.2239 4.0031 -2.2707 34 1 3.8397 7.5423 -1.3449 35 1 4.7198 6.1341 -0.7040 36 1 4.3200 6.2209 -2.4363 37 1 -1.5643 5.7172 -2.8470 38 1 -0.6512 7.2446 -2.8753 39 1 -0.2063 5.9215 -3.9798 40 1 0.8177 3.8440 -3.0931 41 1 -0.4914 3.6360 -1.9044 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000560119062.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:24 Heat of formation + Delta-G solvation = -88.925990 kcal Electronic energy + Delta-G solvation = -18650.243254 eV Core-core repulsion = 15949.280308 eV Total energy + Delta-G solvation = -2700.962946 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.67966 -37.95091 -35.06208 -34.57167 -33.47272 -31.55730 -29.80064 -27.85621 -27.13576 -24.69234 -22.73646 -22.59594 -21.65947 -21.02494 -18.57102 -17.41567 -16.88978 -16.66526 -15.94356 -15.76784 -15.35620 -14.91192 -14.60594 -14.56070 -13.72974 -13.52103 -13.38186 -13.18078 -13.09470 -13.05156 -12.81347 -12.79894 -12.67334 -12.49952 -12.16848 -12.02887 -11.94314 -11.81995 -11.55298 -11.47672 -11.04009 -10.90831 -10.44939 -10.34424 -9.00976 -8.04500 -6.24992 1.37140 1.39544 1.47309 2.39885 2.77718 3.15496 3.54326 3.83236 3.97755 4.04673 4.23044 4.25134 4.42830 4.47512 4.58940 4.61622 4.69805 4.74396 4.77378 4.86881 4.91439 4.93383 5.05422 5.09421 5.14537 5.18041 5.24869 5.33489 5.36891 5.41185 5.42453 5.55353 5.64522 5.78500 6.11703 6.21706 6.37927 6.42218 6.82327 7.03497 7.45739 8.92439 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021756 B = 0.008004 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.721428 B = 3497.593639 C = 4579.016399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C 0.224 3.776 4 H -0.004 1.004 5 C -0.548 4.548 6 H 0.055 0.945 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.945 3.055 10 H -0.278 1.278 11 H -0.270 1.270 12 H -0.286 1.286 13 N -0.675 5.675 14 C 0.095 3.905 15 H 0.045 0.955 16 C -0.165 4.165 17 C 0.091 3.909 18 H 0.049 0.951 19 C -0.138 4.138 20 O -0.389 6.389 21 C 0.082 3.918 22 H 0.053 0.947 23 C -0.135 4.135 24 C -0.124 4.124 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.028 0.972 28 H 0.027 0.973 29 H 0.060 0.940 30 H 0.260 0.740 31 H 0.330 0.670 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.419 9.743 -7.526 13.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.143 4.143 3 C 0.115 3.885 4 H 0.014 0.986 5 C -0.587 4.587 6 H 0.073 0.927 7 C -0.180 4.180 8 N -0.552 5.552 9 Si 0.771 3.229 10 H -0.204 1.204 11 H -0.194 1.194 12 H -0.212 1.212 13 N -0.302 5.302 14 C -0.016 4.016 15 H 0.064 0.936 16 C -0.204 4.204 17 C 0.032 3.968 18 H 0.067 0.933 19 C -0.195 4.195 20 O -0.309 6.309 21 C 0.024 3.976 22 H 0.071 0.929 23 C -0.192 4.192 24 C -0.162 4.162 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.147 0.853 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.055 9.629 -7.414 13.162 hybrid contribution 2.070 -0.344 0.919 2.291 sum -2.985 9.285 -6.495 11.718 Atomic orbital electron populations 1.21574 0.96541 0.99926 1.00324 1.21378 0.94358 0.98607 0.99915 1.18952 0.91874 0.91374 0.86264 0.98601 1.22175 0.93790 1.37474 1.05307 0.92670 1.25640 1.01703 0.94983 0.95701 1.70010 1.36253 1.39096 1.09855 0.85761 0.81548 0.78511 0.77048 1.20352 1.19423 1.21194 1.60867 1.52400 1.07924 1.09036 1.21500 0.94096 0.88315 0.97662 0.93641 1.22882 0.99366 0.96206 1.01976 1.22045 0.90116 0.92876 0.91713 0.93260 1.21727 0.94209 1.00933 1.02640 1.87846 1.20144 1.67881 1.55061 1.22234 0.83816 0.91891 0.99617 0.92884 1.21727 0.97936 1.01659 0.97882 1.22143 0.99731 0.95074 0.99290 0.92220 0.93648 0.95260 0.95406 0.92189 0.93036 0.85345 0.91872 0.91977 0.90894 0.90980 0.91946 0.89503 0.91441 0.91964 0.91524 0.90408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.11 9.86 71.98 0.71 -4.40 16 2 C -0.10 -4.99 5.45 30.59 0.17 -4.82 16 3 C 0.22 11.01 1.99 44.17 0.09 11.10 16 4 H 0.00 -0.22 7.33 -2.39 -0.02 -0.24 16 5 C -0.55 -28.90 7.25 25.60 0.19 -28.72 16 6 H 0.06 2.86 6.88 -2.91 -0.02 2.84 16 7 C 0.02 1.05 5.29 84.66 0.45 1.50 16 8 N -0.91 -51.92 11.29 21.45 0.24 -51.68 16 9 Si 0.94 42.93 29.54 68.60 2.03 44.96 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 12 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 13 N -0.67 -27.68 5.45 -472.71 -2.57 -30.25 16 14 C 0.10 3.49 2.56 45.03 0.12 3.60 16 15 H 0.05 1.86 7.34 -2.38 -0.02 1.84 16 16 C -0.16 -5.84 4.29 30.69 0.13 -5.71 16 17 C 0.09 2.77 3.26 30.63 0.10 2.87 16 18 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 19 C -0.14 -3.57 9.57 71.98 0.69 -2.88 16 20 O -0.39 -11.65 10.05 -148.98 -1.50 -13.15 16 21 C 0.08 2.19 3.26 30.62 0.10 2.29 16 22 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 23 C -0.13 -2.72 9.56 71.98 0.69 -2.03 16 24 C -0.12 -3.68 5.03 30.68 0.15 -3.52 16 25 H 0.06 2.28 7.63 -2.38 -0.02 2.26 16 26 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.06 3.26 5.95 -2.39 -0.01 3.24 16 30 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 31 H 0.33 13.53 7.99 -89.70 -0.72 12.82 16 32 H 0.06 2.60 6.40 -2.39 -0.02 2.58 16 33 H 0.06 2.17 8.08 -2.38 -0.02 2.15 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -57.05 316.77 2.03 -55.02 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 0.26 Total: 25.82 kcal Atomic # 6 Polarization: -34.30 SS G_CDS: 3.58 Total: -30.73 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -2.33 Total: -81.93 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -1.50 Total: -13.15 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -57.05 2.03 -55.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000560119062.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.905 kcal (2) G-P(sol) polarization free energy of solvation -57.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds