Wall clock time and date at job start Sun Mar 29 2020 22:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47327 * 2 1 4 4 C 1.52999 * 109.46957 * 119.99765 * 2 1 3 5 5 H 1.08993 * 109.49108 * 302.86579 * 4 2 1 6 6 O 1.42907 * 109.48129 * 182.84043 * 4 2 1 7 7 C 1.42899 * 114.09799 * 178.86049 * 6 4 2 8 8 C 1.53094 * 109.41510 * 61.15696 * 7 6 4 9 9 C 1.53177 * 109.16523 * 302.38923 * 8 7 6 10 10 C 1.53093 * 109.48239 * 62.89686 * 4 2 1 11 11 H 1.08999 * 109.57531 * 297.53161 * 10 4 2 12 12 C 1.53004 * 109.52056 * 57.68378 * 10 4 2 13 13 N 1.46899 * 109.47067 * 183.30228 * 12 10 4 14 14 C 1.46896 * 111.00259 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.47661 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99276 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00182 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00443 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99886 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46994 * 180.02562 * 19 17 15 21 21 H 1.48502 * 109.46945 * 60.00152 * 19 17 15 22 22 H 1.48496 * 109.47069 * 300.00313 * 19 17 15 23 23 H 1.08996 * 109.47370 * 300.00064 * 1 2 3 24 24 H 1.08999 * 109.46862 * 60.00039 * 1 2 3 25 25 H 1.09001 * 109.47073 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47370 * 239.99936 * 2 1 3 27 27 H 1.09003 * 109.47344 * 65.27424 * 3 2 1 28 28 H 1.08999 * 109.47429 * 185.27968 * 3 2 1 29 29 H 1.09002 * 109.46736 * 305.28054 * 3 2 1 30 30 H 1.09002 * 109.48181 * 301.17176 * 7 6 4 31 31 H 1.09000 * 109.48098 * 181.13560 * 7 6 4 32 32 H 1.09010 * 109.52161 * 182.48523 * 8 7 6 33 33 H 1.09004 * 109.57262 * 62.33112 * 8 7 6 34 34 H 1.08996 * 109.54063 * 297.11950 * 9 8 7 35 35 H 1.08995 * 109.61967 * 176.88863 * 9 8 7 36 36 H 1.09002 * 109.46900 * 63.30611 * 12 10 4 37 37 H 1.09000 * 109.47473 * 303.30193 * 12 10 4 38 38 H 1.00904 * 111.00217 * 303.95664 * 13 12 10 39 39 H 1.09002 * 109.47061 * 60.00320 * 14 13 12 40 40 H 1.08998 * 109.47386 * 300.00526 * 14 13 12 41 41 H 0.97005 * 119.99713 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6354 -0.2381 2.1387 6 8 3.4674 -0.6638 1.2834 7 6 4.0493 -1.2888 2.4292 8 6 3.6802 -2.7745 2.4409 9 6 2.1548 -2.9138 2.4364 10 6 1.5902 -2.1841 1.2136 11 1 0.5014 -2.2320 1.2315 12 6 2.1101 -2.8479 -0.0631 13 7 1.6123 -4.2281 -0.1351 14 6 2.0920 -4.8981 -1.3511 15 6 1.5618 -6.3082 -1.3904 16 1 0.9310 -6.6702 -0.5920 17 6 1.8818 -7.1359 -2.4456 18 7 2.6502 -6.6952 -3.4176 19 14 1.2238 -8.8836 -2.4945 20 1 1.7099 -9.5612 -3.7232 21 1 -0.2609 -8.8535 -2.4996 22 1 1.6998 -9.6253 -1.2994 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.7559 1.9284 0.9335 28 1 3.1259 1.4440 -0.0946 29 1 1.6015 1.9829 -0.8390 30 1 3.6711 -0.8131 3.3341 31 1 5.1335 -1.1839 2.3892 32 1 4.0862 -3.2436 3.3372 33 1 4.0930 -3.2603 1.5567 34 1 1.7457 -2.4726 3.3453 35 1 1.8837 -3.9684 2.3889 36 1 3.2001 -2.8550 -0.0509 37 1 1.7601 -2.2897 -0.9314 38 1 1.8692 -4.7487 0.6903 39 1 3.1818 -4.9194 -1.3484 40 1 1.7415 -4.3539 -2.2281 41 1 2.9916 -5.7875 -3.3924 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566792418.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:48 Heat of formation + Delta-G solvation = -76.328897 kcal Electronic energy + Delta-G solvation = -18443.673949 eV Core-core repulsion = 15743.257254 eV Total energy + Delta-G solvation = -2700.416695 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.04937 -35.77305 -35.36373 -33.57509 -32.03779 -30.20157 -27.17449 -26.59606 -25.03361 -23.98382 -22.81788 -21.69521 -20.24549 -18.74093 -16.86364 -16.40412 -16.16883 -15.37777 -14.84210 -14.29548 -13.81916 -13.75700 -13.61009 -13.39980 -13.08506 -12.75427 -12.61437 -12.21281 -12.09743 -11.56990 -11.55497 -11.23081 -11.08783 -11.07560 -10.79790 -10.75876 -10.65660 -10.49057 -10.08406 -10.05863 -9.80694 -9.26767 -8.58168 -8.38750 -7.33616 -6.35519 -4.04223 3.45388 3.48184 3.66764 3.78516 4.54748 4.66162 4.85956 4.87312 4.97398 5.03649 5.14842 5.21791 5.32290 5.41045 5.43015 5.51952 5.58422 5.63567 5.70960 5.74251 5.82927 5.85903 5.95990 6.00063 6.04017 6.13916 6.26110 6.28850 6.34696 6.35881 6.52463 6.59998 7.00477 7.19998 7.32951 7.82947 8.19477 8.50986 8.60331 8.89662 9.67864 11.04291 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029500 B = 0.005456 C = 0.005046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.925500 B = 5130.464523 C = 5547.148473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.140 4.140 4 C 0.104 3.896 5 H 0.053 0.947 6 O -0.376 6.376 7 C 0.065 3.935 8 C -0.160 4.160 9 C -0.119 4.119 10 C -0.116 4.116 11 H 0.087 0.913 12 C 0.066 3.934 13 N -0.684 5.684 14 C 0.185 3.815 15 C -0.595 4.595 16 H 0.055 0.945 17 C 0.014 3.986 18 N -0.914 5.914 19 Si 1.074 2.926 20 H -0.283 1.283 21 H -0.287 1.287 22 H -0.289 1.289 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.025 0.975 37 H 0.065 0.935 38 H 0.328 0.672 39 H -0.026 1.026 40 H 0.017 0.983 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.459 13.711 11.882 18.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.198 4.198 4 C 0.046 3.954 5 H 0.071 0.929 6 O -0.295 6.295 7 C -0.012 4.012 8 C -0.198 4.198 9 C -0.156 4.156 10 C -0.135 4.135 11 H 0.105 0.895 12 C -0.064 4.064 13 N -0.315 5.315 14 C 0.057 3.943 15 C -0.633 4.633 16 H 0.073 0.927 17 C -0.190 4.190 18 N -0.550 5.550 19 Si 0.902 3.098 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.215 1.215 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.101 0.899 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.043 0.957 37 H 0.083 0.917 38 H 0.145 0.855 39 H -0.008 1.008 40 H 0.035 0.965 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.954 12.581 10.544 16.443 hybrid contribution 0.835 1.100 1.397 1.964 sum -0.119 13.681 11.941 18.160 Atomic orbital electron populations 1.21858 0.94291 1.02734 1.01618 1.21167 0.95708 0.96245 0.97992 1.21745 1.01663 0.95366 1.01003 1.22132 0.81107 0.94550 0.97630 0.92899 1.87902 1.19760 1.77596 1.44225 1.22491 0.98213 0.92069 0.88418 1.22235 0.97170 0.97450 1.02917 1.21617 0.94856 1.01683 0.97463 1.21828 1.01479 0.94439 0.95744 0.89463 1.21928 0.96818 0.91638 0.96028 1.60622 1.63344 1.01241 1.06298 1.19624 0.92258 0.94490 0.87889 1.22006 1.34049 0.97135 1.10155 0.92694 1.25868 0.95345 1.05305 0.92468 1.70790 1.31825 1.19421 1.32996 0.83479 0.75899 0.74464 0.75987 1.20817 1.21373 1.21517 0.92911 0.92278 0.91539 0.89875 0.93256 0.92065 0.92985 0.93730 0.89322 0.91286 0.90702 0.92321 0.90770 0.95654 0.91687 0.85472 1.00843 0.96518 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.91 37.16 0.33 -1.34 16 2 C -0.09 -1.17 2.39 -90.62 -0.22 -1.38 16 3 C -0.14 -1.56 8.94 37.16 0.33 -1.22 16 4 C 0.10 1.36 1.91 -26.68 -0.05 1.31 16 5 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 6 O -0.38 -5.30 9.20 -35.23 -0.32 -5.62 16 7 C 0.06 0.77 6.84 37.21 0.25 1.02 16 8 C -0.16 -2.04 5.77 -26.59 -0.15 -2.19 16 9 C -0.12 -1.58 5.34 -26.55 -0.14 -1.72 16 10 C -0.12 -1.69 2.10 -90.48 -0.19 -1.88 16 11 H 0.09 1.29 6.64 -51.93 -0.34 0.95 16 12 C 0.07 1.21 4.49 -3.82 -0.02 1.19 16 13 N -0.68 -15.14 6.48 -115.06 -0.75 -15.88 16 14 C 0.18 4.98 4.75 -4.98 -0.02 4.96 16 15 C -0.59 -17.45 9.32 -34.44 -0.32 -17.77 16 16 H 0.05 1.59 7.81 -52.49 -0.41 1.18 16 17 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 18 N -0.91 -28.57 13.65 55.43 0.76 -27.82 16 19 Si 1.07 25.75 29.90 -169.99 -5.08 20.67 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.84 6.56 -51.93 -0.34 0.50 16 26 H 0.08 1.21 6.16 -51.93 -0.32 0.89 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.72 7.78 -51.93 -0.40 0.32 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 33 H 0.07 1.14 6.55 -51.93 -0.34 0.80 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 1.07 6.52 -51.93 -0.34 0.73 16 36 H 0.03 0.50 6.07 -51.93 -0.32 0.18 16 37 H 0.06 1.24 6.15 -51.93 -0.32 0.92 16 38 H 0.33 6.98 6.86 -39.29 -0.27 6.72 16 39 H -0.03 -0.74 8.01 -51.93 -0.42 -1.16 16 40 H 0.02 0.48 8.01 -51.93 -0.42 0.07 16 41 H 0.27 8.36 7.22 -40.82 -0.29 8.07 16 LS Contribution 310.40 15.07 4.68 4.68 Total: -1.00 -31.31 310.40 -8.14 -39.45 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -7.13 Total: 3.25 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: -0.29 Total: -18.73 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.01 Total: -43.70 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -0.32 Total: -5.62 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -5.08 Total: 20.67 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.31 -8.14 -39.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566792418.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.876 kcal (2) G-P(sol) polarization free energy of solvation -31.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds