Wall clock time and date at job start Sun Mar 29 2020 22:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47327 * 2 1 4 4 C 1.52999 * 109.46957 * 119.99765 * 2 1 3 5 5 H 1.08993 * 109.49108 * 302.86579 * 4 2 1 6 6 O 1.42907 * 109.48129 * 182.84043 * 4 2 1 7 7 C 1.42899 * 114.09799 * 178.86049 * 6 4 2 8 8 C 1.53094 * 109.41510 * 61.15696 * 7 6 4 9 9 C 1.53177 * 109.16523 * 302.38923 * 8 7 6 10 10 C 1.53093 * 109.48239 * 62.89686 * 4 2 1 11 11 H 1.08999 * 109.57531 * 297.53161 * 10 4 2 12 12 C 1.53004 * 109.52056 * 57.68378 * 10 4 2 13 13 N 1.46899 * 109.47067 * 183.30228 * 12 10 4 14 14 C 1.46896 * 111.00259 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.47661 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99276 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00182 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00443 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99886 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46994 * 180.02562 * 19 17 15 21 21 H 1.48502 * 109.46945 * 60.00152 * 19 17 15 22 22 H 1.48496 * 109.47069 * 300.00313 * 19 17 15 23 23 H 1.08996 * 109.47370 * 300.00064 * 1 2 3 24 24 H 1.08999 * 109.46862 * 60.00039 * 1 2 3 25 25 H 1.09001 * 109.47073 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47370 * 239.99936 * 2 1 3 27 27 H 1.09003 * 109.47344 * 65.27424 * 3 2 1 28 28 H 1.08999 * 109.47429 * 185.27968 * 3 2 1 29 29 H 1.09002 * 109.46736 * 305.28054 * 3 2 1 30 30 H 1.09002 * 109.48181 * 301.17176 * 7 6 4 31 31 H 1.09000 * 109.48098 * 181.13560 * 7 6 4 32 32 H 1.09010 * 109.52161 * 182.48523 * 8 7 6 33 33 H 1.09004 * 109.57262 * 62.33112 * 8 7 6 34 34 H 1.08996 * 109.54063 * 297.11950 * 9 8 7 35 35 H 1.08995 * 109.61967 * 176.88863 * 9 8 7 36 36 H 1.09002 * 109.46900 * 63.30611 * 12 10 4 37 37 H 1.09000 * 109.47473 * 303.30193 * 12 10 4 38 38 H 1.00904 * 111.00217 * 303.95664 * 13 12 10 39 39 H 1.09002 * 109.47061 * 60.00320 * 14 13 12 40 40 H 1.08998 * 109.47386 * 300.00526 * 14 13 12 41 41 H 0.97005 * 119.99713 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6354 -0.2381 2.1387 6 8 3.4674 -0.6638 1.2834 7 6 4.0493 -1.2888 2.4292 8 6 3.6802 -2.7745 2.4409 9 6 2.1548 -2.9138 2.4364 10 6 1.5902 -2.1841 1.2136 11 1 0.5014 -2.2320 1.2315 12 6 2.1101 -2.8479 -0.0631 13 7 1.6123 -4.2281 -0.1351 14 6 2.0920 -4.8981 -1.3511 15 6 1.5618 -6.3082 -1.3904 16 1 0.9310 -6.6702 -0.5920 17 6 1.8818 -7.1359 -2.4456 18 7 2.6502 -6.6952 -3.4176 19 14 1.2238 -8.8836 -2.4945 20 1 1.7099 -9.5612 -3.7232 21 1 -0.2609 -8.8535 -2.4996 22 1 1.6998 -9.6253 -1.2994 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.7559 1.9284 0.9335 28 1 3.1259 1.4440 -0.0946 29 1 1.6015 1.9829 -0.8390 30 1 3.6711 -0.8131 3.3341 31 1 5.1335 -1.1839 2.3892 32 1 4.0862 -3.2436 3.3372 33 1 4.0930 -3.2603 1.5567 34 1 1.7457 -2.4726 3.3453 35 1 1.8837 -3.9684 2.3889 36 1 3.2001 -2.8550 -0.0509 37 1 1.7601 -2.2897 -0.9314 38 1 1.8692 -4.7487 0.6903 39 1 3.1818 -4.9194 -1.3484 40 1 1.7415 -4.3539 -2.2281 41 1 2.9916 -5.7875 -3.3924 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566792418.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:47 Heat of formation + Delta-G solvation = -97.020056 kcal Electronic energy + Delta-G solvation = -18444.571185 eV Core-core repulsion = 15743.257254 eV Total energy + Delta-G solvation = -2701.313931 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.16133 -37.43687 -36.37725 -35.34220 -33.74315 -31.41643 -28.49911 -28.06725 -26.19107 -25.59381 -24.06444 -23.70062 -21.23569 -20.01764 -18.97596 -17.51769 -17.25744 -16.87417 -16.17323 -15.66529 -15.52181 -15.30373 -14.87570 -14.84123 -14.32957 -14.06374 -13.77362 -13.53649 -13.38774 -13.11473 -12.98655 -12.81576 -12.51110 -12.31064 -12.17657 -12.04902 -11.92714 -11.87427 -11.68674 -11.22652 -10.96322 -10.79963 -10.64468 -10.29004 -9.26313 -8.74971 -6.46166 1.52282 1.61584 1.81424 2.54429 2.80452 3.10265 3.42029 3.61254 3.78220 3.90315 3.98692 4.10312 4.15286 4.22196 4.38822 4.39388 4.50337 4.60606 4.63231 4.69938 4.73298 4.79398 4.81004 4.89194 4.95046 4.99053 5.02210 5.08753 5.11537 5.22780 5.28682 5.29502 5.43551 5.47906 5.69108 5.96934 6.32686 6.35197 6.50603 6.64476 7.37274 8.64474 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029500 B = 0.005456 C = 0.005046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.925500 B = 5130.464523 C = 5547.148473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 C -0.134 4.134 4 C 0.108 3.892 5 H 0.078 0.922 6 O -0.396 6.396 7 C 0.062 3.938 8 C -0.158 4.158 9 C -0.118 4.118 10 C -0.109 4.109 11 H 0.089 0.911 12 C 0.072 3.928 13 N -0.679 5.679 14 C 0.196 3.804 15 C -0.612 4.612 16 H 0.058 0.942 17 C -0.038 4.038 18 N -0.936 5.936 19 Si 1.126 2.874 20 H -0.282 1.282 21 H -0.268 1.268 22 H -0.266 1.266 23 H 0.073 0.927 24 H 0.064 0.936 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.040 0.960 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.011 0.989 37 H 0.052 0.948 38 H 0.334 0.666 39 H -0.051 1.051 40 H -0.008 1.008 41 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.419 14.095 14.009 19.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 C -0.191 4.191 4 C 0.050 3.950 5 H 0.096 0.904 6 O -0.315 6.315 7 C -0.015 4.015 8 C -0.196 4.196 9 C -0.156 4.156 10 C -0.128 4.128 11 H 0.107 0.893 12 C -0.057 4.057 13 N -0.310 5.310 14 C 0.068 3.932 15 C -0.650 4.650 16 H 0.076 0.924 17 C -0.235 4.235 18 N -0.573 5.573 19 Si 0.946 3.054 20 H -0.208 1.208 21 H -0.193 1.193 22 H -0.191 1.191 23 H 0.092 0.908 24 H 0.083 0.917 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.117 0.883 32 H 0.109 0.891 33 H 0.059 0.941 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.029 0.971 37 H 0.071 0.929 38 H 0.152 0.848 39 H -0.033 1.033 40 H 0.010 0.990 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.912 13.000 12.701 18.275 hybrid contribution 1.166 1.045 0.745 1.734 sum -0.746 14.045 13.446 19.458 Atomic orbital electron populations 1.21820 0.93207 1.02020 1.02996 1.21186 0.96617 0.97004 0.96669 1.21684 1.00860 0.94338 1.02263 1.22160 0.80921 0.93202 0.98710 0.90394 1.87895 1.20244 1.77805 1.45600 1.22666 0.98972 0.91144 0.88683 1.22219 0.96698 0.98350 1.02324 1.21637 0.95310 1.00771 0.97862 1.21779 1.01430 0.95603 0.93947 0.89311 1.21926 0.95950 0.89606 0.98223 1.60535 1.63104 1.02667 1.04733 1.19325 0.90546 0.94170 0.89169 1.22363 1.34065 0.98139 1.10388 0.92402 1.27585 0.94576 1.09636 0.91734 1.70931 1.33387 1.18740 1.34227 0.82833 0.76359 0.69402 0.76797 1.20782 1.19343 1.19137 0.90771 0.91696 0.93233 0.92878 0.91627 0.93239 0.92108 0.91127 0.88291 0.89099 0.94137 0.89356 0.92261 0.97080 0.92937 0.84761 1.03334 0.99043 0.93941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.91 71.98 0.64 -2.41 16 2 C -0.10 -2.35 2.39 -10.79 -0.03 -2.37 16 3 C -0.13 -2.76 8.94 71.98 0.64 -2.11 16 4 C 0.11 2.65 1.91 30.63 0.06 2.70 16 5 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 6 O -0.40 -10.67 9.20 -148.98 -1.37 -12.04 16 7 C 0.06 1.32 6.84 72.01 0.49 1.82 16 8 C -0.16 -3.83 5.77 30.68 0.18 -3.65 16 9 C -0.12 -2.95 5.34 30.71 0.16 -2.79 16 10 C -0.11 -3.09 2.10 -10.70 -0.02 -3.11 16 11 H 0.09 2.52 6.64 -2.39 -0.02 2.50 16 12 C 0.07 2.76 4.49 86.30 0.39 3.15 16 13 N -0.68 -30.95 6.48 -517.93 -3.36 -34.31 16 14 C 0.20 11.07 4.75 85.56 0.41 11.47 16 15 C -0.61 -36.45 9.32 25.60 0.24 -36.21 16 16 H 0.06 3.35 7.81 -2.91 -0.02 3.33 16 17 C -0.04 -2.27 5.46 84.65 0.46 -1.81 16 18 N -0.94 -59.88 13.65 21.45 0.29 -59.59 16 19 Si 1.13 51.18 29.90 68.60 2.05 53.23 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 23 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.05 1.21 6.56 -2.39 -0.02 1.20 16 26 H 0.05 1.60 6.16 -2.39 -0.01 1.59 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.05 1.13 7.78 -2.39 -0.02 1.11 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.04 1.25 6.55 -2.39 -0.02 1.23 16 34 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 1.65 6.52 -2.39 -0.02 1.64 16 36 H 0.01 0.46 6.07 -2.39 -0.01 0.44 16 37 H 0.05 2.13 6.15 -2.39 -0.01 2.11 16 38 H 0.33 14.51 6.86 -89.69 -0.62 13.89 16 39 H -0.05 -3.07 8.01 -2.39 -0.02 -3.08 16 40 H -0.01 -0.51 8.01 -2.39 -0.02 -0.53 16 41 H 0.25 16.47 7.22 -92.70 -0.67 15.80 16 Total: -1.00 -68.80 310.40 1.71 -67.09 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.47 Total: 20.95 kcal Atomic # 6 Polarization: -38.95 SS G_CDS: 3.62 Total: -35.33 kcal Atomic # 7 Polarization: -90.83 SS G_CDS: -3.07 Total: -93.90 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -1.37 Total: -12.04 kcal Atomic # 14 Polarization: 51.18 SS G_CDS: 2.05 Total: 53.23 kcal Total: -68.80 1.71 -67.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566792418.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.933 kcal (2) G-P(sol) polarization free energy of solvation -68.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds