Wall clock time and date at job start Sun Mar 29 2020 22:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47204 * 2 1 4 4 C 1.53000 * 109.46765 * 120.00171 * 2 1 3 5 5 H 1.09000 * 109.48027 * 300.01487 * 4 2 1 6 6 O 1.42904 * 109.49292 * 60.05203 * 4 2 1 7 7 C 1.42900 * 114.09596 * 181.14650 * 6 4 2 8 8 C 1.53096 * 109.41625 * 298.83845 * 7 6 4 9 9 C 1.53179 * 109.16059 * 57.60719 * 8 7 6 10 10 C 1.53098 * 109.47645 * 180.02562 * 4 2 1 11 11 H 1.08996 * 109.52397 * 62.42485 * 10 4 2 12 12 C 1.53008 * 109.51894 * 302.29933 * 10 4 2 13 13 N 1.46902 * 109.46622 * 175.00241 * 12 10 4 14 14 C 1.46906 * 110.99573 * 179.97438 * 13 12 10 15 15 C 1.50699 * 109.46990 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99734 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00116 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99947 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00011 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47244 * 60.00135 * 19 17 15 21 21 H 1.48506 * 109.47128 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47486 * 299.99779 * 19 17 15 23 23 H 1.09007 * 109.46945 * 59.99913 * 1 2 3 24 24 H 1.09000 * 109.47633 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47001 * 300.00288 * 1 2 3 26 26 H 1.09001 * 109.46548 * 239.99993 * 2 1 3 27 27 H 1.09003 * 109.47092 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.47240 * 299.99906 * 3 2 1 29 29 H 1.09001 * 109.47377 * 59.99941 * 3 2 1 30 30 H 1.09003 * 109.48381 * 58.81785 * 7 6 4 31 31 H 1.09003 * 109.47865 * 178.85687 * 7 6 4 32 32 H 1.08997 * 109.52432 * 177.51745 * 8 7 6 33 33 H 1.08999 * 109.51949 * 297.70987 * 8 7 6 34 34 H 1.09001 * 109.54087 * 183.15380 * 9 8 7 35 35 H 1.09005 * 109.53859 * 62.89371 * 9 8 7 36 36 H 1.08990 * 109.46924 * 55.00379 * 12 10 4 37 37 H 1.09004 * 109.46978 * 295.00256 * 12 10 4 38 38 H 1.00896 * 111.00219 * 303.95583 * 13 12 10 39 39 H 1.09002 * 109.46991 * 299.99841 * 14 13 12 40 40 H 1.09000 * 109.47202 * 60.00133 * 14 13 12 41 41 H 0.96998 * 120.00296 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6764 -0.2078 2.1393 6 8 1.5648 -2.0690 1.2490 7 6 1.9641 -2.8286 2.3917 8 6 3.4920 -2.9134 2.4379 9 6 4.0735 -1.4967 2.4712 10 6 3.5709 -0.7209 1.2498 11 1 3.9349 0.3056 1.2935 12 6 4.0828 -1.3909 -0.0270 13 7 5.5468 -1.2838 -0.0830 14 6 6.0750 -1.9183 -1.2981 15 6 7.5763 -1.7894 -1.3202 16 1 8.0870 -1.2867 -0.5121 17 6 8.2978 -2.3130 -2.3719 18 7 7.6759 -2.9255 -3.3557 19 14 10.1586 -2.1525 -2.3996 20 1 10.7310 -2.8214 -1.2037 21 1 10.6926 -2.7940 -3.6280 22 1 10.5318 -0.7153 -2.3891 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.5996 -2.3426 3.2968 31 1 1.5461 -3.8331 2.3246 32 1 3.7999 -3.4547 3.3324 33 1 3.8547 -3.4352 1.5523 34 1 5.1620 -1.5487 2.4476 35 1 3.7509 -0.9916 3.3817 36 1 3.6488 -0.8962 -0.8959 37 1 3.7951 -2.4423 -0.0260 38 1 5.8417 -0.3209 -0.0200 39 1 5.8011 -2.9733 -1.3055 40 1 5.6548 -1.4277 -2.1761 41 1 8.1834 -3.2942 -4.0954 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566792419.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:49 Heat of formation + Delta-G solvation = -73.157392 kcal Electronic energy + Delta-G solvation = -18399.453957 eV Core-core repulsion = 15699.174789 eV Total energy + Delta-G solvation = -2700.279168 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.91698 -35.64334 -35.19946 -33.34478 -32.00273 -30.13038 -27.17075 -26.91959 -24.83144 -24.11680 -22.76493 -21.33717 -20.17089 -18.71703 -16.43890 -16.24010 -16.02184 -15.15386 -14.79293 -14.44951 -13.97156 -13.89732 -13.45461 -13.27971 -12.83025 -12.50643 -12.31554 -12.28475 -12.13116 -11.47437 -11.41625 -11.22000 -11.03468 -11.00384 -10.80575 -10.66497 -10.62478 -10.53077 -9.99718 -9.93133 -9.72195 -9.20669 -9.03330 -8.44150 -7.18870 -6.00003 -4.02044 3.34843 3.38687 3.41699 3.86747 4.45127 4.75253 4.93435 5.01183 5.07477 5.19469 5.25593 5.31726 5.35493 5.37754 5.57411 5.64215 5.65976 5.67789 5.77255 5.82084 5.87248 5.99684 6.05727 6.10080 6.13785 6.17532 6.36009 6.38512 6.46033 6.54103 6.65598 6.78365 7.31829 7.42215 7.48108 7.81906 8.17754 8.45812 8.67511 9.07412 9.62704 11.11080 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029424 B = 0.005437 C = 0.005027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.377132 B = 5149.070687 C = 5568.591453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 C -0.147 4.147 4 C 0.104 3.896 5 H 0.051 0.949 6 O -0.376 6.376 7 C 0.063 3.937 8 C -0.156 4.156 9 C -0.108 4.108 10 C -0.115 4.115 11 H 0.075 0.925 12 C 0.067 3.933 13 N -0.689 5.689 14 C 0.196 3.804 15 C -0.513 4.513 16 H 0.061 0.939 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.899 3.101 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.051 0.949 24 H 0.062 0.938 25 H 0.048 0.952 26 H 0.084 0.916 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.042 0.958 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.048 0.952 36 H 0.020 0.980 37 H 0.070 0.930 38 H 0.324 0.676 39 H 0.026 0.974 40 H -0.016 1.016 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.135 5.151 10.417 17.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 C -0.204 4.204 4 C 0.045 3.955 5 H 0.069 0.931 6 O -0.295 6.295 7 C -0.013 4.013 8 C -0.194 4.194 9 C -0.145 4.145 10 C -0.134 4.134 11 H 0.094 0.906 12 C -0.063 4.063 13 N -0.318 5.318 14 C 0.069 3.931 15 C -0.552 4.552 16 H 0.079 0.921 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.727 3.273 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.203 1.203 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.102 0.898 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.066 0.934 36 H 0.038 0.962 37 H 0.088 0.912 38 H 0.140 0.860 39 H 0.044 0.956 40 H 0.002 0.998 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.108 4.409 10.477 17.351 hybrid contribution 0.966 0.702 -0.572 1.324 sum -12.142 5.111 9.906 16.483 Atomic orbital electron populations 1.21761 0.95020 1.02165 1.00933 1.21173 0.96020 0.95757 0.98276 1.21852 1.01749 0.95149 1.01644 1.22107 0.92948 0.82992 0.97408 0.93074 1.87887 1.74418 1.23398 1.43827 1.22534 0.94733 0.95792 0.88274 1.22191 0.95709 0.98420 1.03085 1.21482 1.02507 0.94553 0.95957 1.21820 0.94619 1.00129 0.96857 0.90638 1.21929 0.90013 1.00423 0.93900 1.60647 1.06791 1.20878 1.43533 1.19508 0.94623 0.94508 0.84464 1.21162 0.91636 1.36522 1.05892 0.92101 1.24992 0.98762 0.95347 0.95490 1.69958 1.35728 1.37932 1.10168 0.86555 0.85293 0.78223 0.77268 1.20198 1.21359 1.20307 0.93024 0.91940 0.93305 0.89777 0.91927 0.92326 0.92858 0.93988 0.89425 0.91594 0.90121 0.89700 0.93362 0.96206 0.91204 0.85990 0.95598 0.99793 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.05 37.16 0.34 -1.23 16 2 C -0.09 -1.18 2.32 -90.62 -0.21 -1.39 16 3 C -0.15 -1.63 8.84 37.15 0.33 -1.31 16 4 C 0.10 1.37 1.91 -26.68 -0.05 1.32 16 5 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 6 O -0.38 -5.41 9.25 -35.23 -0.33 -5.74 16 7 C 0.06 0.78 6.84 37.21 0.25 1.03 16 8 C -0.16 -2.12 5.78 -26.59 -0.15 -2.27 16 9 C -0.11 -1.51 5.45 -26.55 -0.14 -1.66 16 10 C -0.12 -1.68 1.96 -90.47 -0.18 -1.85 16 11 H 0.08 1.06 6.57 -51.93 -0.34 0.71 16 12 C 0.07 1.23 4.46 -3.82 -0.02 1.21 16 13 N -0.69 -14.84 5.91 -115.05 -0.68 -15.52 16 14 C 0.20 5.24 5.44 -4.97 -0.03 5.21 16 15 C -0.51 -14.75 9.32 -34.44 -0.32 -15.07 16 16 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 19 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.74 7.68 -51.93 -0.40 0.34 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 1.23 6.28 -51.93 -0.33 0.90 16 27 H 0.06 0.75 6.49 -51.93 -0.34 0.41 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.30 6.51 -51.93 -0.34 0.96 16 34 H 0.08 1.36 7.69 -51.93 -0.40 0.96 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.02 0.37 6.12 -51.93 -0.32 0.06 16 37 H 0.07 1.39 6.04 -51.93 -0.31 1.07 16 38 H 0.32 6.68 8.72 -39.29 -0.34 6.34 16 39 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 40 H -0.02 -0.45 8.14 -51.93 -0.42 -0.87 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 313.93 15.07 4.73 4.73 Total: -1.00 -30.10 313.93 -8.15 -38.25 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -7.31 Total: 2.43 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: -0.28 Total: -14.50 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: 0.06 Total: -42.07 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: -0.33 Total: -5.74 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.10 -8.15 -38.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566792419.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.911 kcal (2) G-P(sol) polarization free energy of solvation -30.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds