Wall clock time and date at job start Sun Mar 29 2020 22:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53009 * 109.47205 * 2 1 4 4 C 1.52991 * 109.47296 * 119.99946 * 2 1 3 5 5 H 1.08998 * 109.48116 * 59.97942 * 4 2 1 6 6 O 1.42905 * 109.48106 * 299.94490 * 4 2 1 7 7 C 1.42908 * 114.09717 * 178.85831 * 6 4 2 8 8 C 1.53091 * 109.41554 * 61.15544 * 7 6 4 9 9 C 1.53171 * 109.16367 * 302.39277 * 8 7 6 10 10 C 1.53098 * 109.48303 * 180.02562 * 4 2 1 11 11 H 1.08999 * 109.52320 * 57.62195 * 10 4 2 12 12 C 1.53002 * 109.52245 * 297.49601 * 10 4 2 13 13 N 1.46895 * 109.46962 * 174.99928 * 12 10 4 14 14 C 1.46904 * 110.99508 * 180.02562 * 13 12 10 15 15 C 1.50703 * 109.46874 * 180.02562 * 14 13 12 16 16 H 1.08006 * 120.00159 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00120 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00089 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99938 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 269.99556 * 19 17 15 21 21 H 1.48503 * 109.47261 * 149.99737 * 19 17 15 22 22 H 1.48500 * 109.47454 * 29.99730 * 19 17 15 23 23 H 1.08996 * 109.46861 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.46943 * 300.00312 * 1 2 3 25 25 H 1.09000 * 109.47130 * 59.99906 * 1 2 3 26 26 H 1.09006 * 109.47156 * 240.00132 * 2 1 3 27 27 H 1.08997 * 109.47017 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.46816 * 300.00287 * 3 2 1 29 29 H 1.08994 * 109.46758 * 59.99638 * 3 2 1 30 30 H 1.09001 * 109.47842 * 181.14104 * 7 6 4 31 31 H 1.09001 * 109.47853 * 301.16090 * 7 6 4 32 32 H 1.09003 * 109.52095 * 62.29968 * 8 7 6 33 33 H 1.08999 * 109.52585 * 182.41842 * 8 7 6 34 34 H 1.09005 * 109.54382 * 297.11024 * 9 8 7 35 35 H 1.09001 * 109.54424 * 176.84579 * 9 8 7 36 36 H 1.09008 * 109.46415 * 54.99885 * 12 10 4 37 37 H 1.08997 * 109.47209 * 295.00437 * 12 10 4 38 38 H 1.00901 * 111.00172 * 303.95357 * 13 12 10 39 39 H 1.09003 * 109.47066 * 60.00292 * 14 13 12 40 40 H 1.08996 * 109.47319 * 299.99765 * 14 13 12 41 41 H 0.96998 * 119.99255 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6765 -1.7488 1.2495 6 8 1.5649 -0.0469 2.4161 7 6 1.9643 -0.6565 3.6454 8 6 3.4921 -0.6540 3.7419 9 6 4.0735 -1.3915 2.5318 10 6 3.5710 -0.7208 1.2497 11 1 3.9350 0.3058 1.2074 12 6 4.0830 -1.4954 0.0336 13 7 5.5470 -1.3933 -0.0310 14 6 6.0750 -2.1264 -1.1894 15 6 7.5763 -1.9998 -1.2222 16 1 8.0871 -1.4312 -0.4590 17 6 8.2978 -2.6089 -2.2269 18 7 7.6759 -3.3008 -3.1565 19 14 10.1588 -2.4525 -2.2670 20 1 10.5380 -1.2556 -3.0601 21 1 10.7442 -3.6659 -2.8917 22 1 10.6738 -2.3117 -0.8813 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.5463 -0.0960 4.4817 31 1 1.5995 -1.6832 3.6774 32 1 3.8549 0.3738 3.7509 33 1 3.8001 -1.1569 4.6586 34 1 3.7510 -2.4326 2.5498 35 1 5.1621 -1.3451 2.5650 36 1 3.6489 -1.0752 -0.8737 37 1 3.7953 -2.5429 0.1226 38 1 5.8418 -0.4285 -0.0490 39 1 5.6548 -1.7102 -2.1051 40 1 5.8012 -3.1784 -1.1093 41 1 6.7095 -3.3822 -3.1353 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566792420.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:51 Heat of formation + Delta-G solvation = -80.018198 kcal Electronic energy + Delta-G solvation = -18246.770158 eV Core-core repulsion = 15546.193483 eV Total energy + Delta-G solvation = -2700.576675 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.90721 -35.99696 -35.16293 -33.62108 -32.17513 -30.24424 -27.15582 -26.59511 -25.20605 -24.09959 -22.03333 -21.44775 -20.52330 -19.49837 -16.90166 -16.43525 -15.67548 -15.12084 -14.81336 -14.48227 -14.02451 -13.80904 -13.65411 -13.48156 -13.26476 -12.77776 -12.38813 -12.05883 -11.93366 -11.83360 -11.45609 -11.32887 -11.24406 -10.95041 -10.83300 -10.72220 -10.58910 -10.38527 -10.17063 -10.07797 -10.01437 -9.25038 -8.62305 -8.41380 -7.39127 -6.38297 -4.07132 3.43686 3.48153 3.64087 3.79032 4.52146 4.69464 4.74892 4.88919 5.00568 5.02541 5.12093 5.25113 5.30153 5.38830 5.47672 5.54311 5.62220 5.67929 5.71220 5.76394 5.83111 5.91202 5.94730 5.99052 6.06950 6.13119 6.19350 6.25064 6.33265 6.44771 6.56833 6.60025 6.93860 7.14765 7.27510 7.77708 8.14808 8.45377 8.57598 8.86692 9.64823 11.01597 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031674 B = 0.005067 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.800591 B = 5524.676772 C = 6053.494931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 C -0.144 4.144 4 C 0.102 3.898 5 H 0.054 0.946 6 O -0.376 6.376 7 C 0.062 3.938 8 C -0.157 4.157 9 C -0.108 4.108 10 C -0.113 4.113 11 H 0.079 0.921 12 C 0.063 3.937 13 N -0.680 5.680 14 C 0.184 3.816 15 C -0.595 4.595 16 H 0.056 0.944 17 C 0.014 3.986 18 N -0.914 5.914 19 Si 1.076 2.924 20 H -0.288 1.288 21 H -0.284 1.284 22 H -0.288 1.288 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.083 0.917 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.022 0.978 37 H 0.061 0.939 38 H 0.330 0.670 39 H -0.025 1.025 40 H 0.017 0.983 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.204 6.627 10.681 18.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 C -0.201 4.201 4 C 0.044 3.956 5 H 0.072 0.928 6 O -0.295 6.295 7 C -0.015 4.015 8 C -0.194 4.194 9 C -0.145 4.145 10 C -0.132 4.132 11 H 0.097 0.903 12 C -0.067 4.067 13 N -0.310 5.310 14 C 0.057 3.943 15 C -0.633 4.633 16 H 0.074 0.926 17 C -0.190 4.190 18 N -0.551 5.551 19 Si 0.904 3.096 20 H -0.215 1.215 21 H -0.210 1.210 22 H -0.214 1.214 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.102 0.898 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.040 0.960 37 H 0.079 0.921 38 H 0.146 0.854 39 H -0.008 1.008 40 H 0.035 0.965 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.859 5.811 10.257 16.722 hybrid contribution -1.467 0.686 0.154 1.627 sum -13.326 6.497 10.412 18.116 Atomic orbital electron populations 1.21765 0.94959 1.01450 1.01808 1.21229 0.96127 0.97210 0.96384 1.21799 1.01215 0.95497 1.01593 1.22090 0.92914 0.95143 0.85445 0.92769 1.87875 1.74500 1.53823 1.13332 1.22526 0.94434 0.97690 0.86842 1.22226 0.96241 1.01724 0.99253 1.21524 1.02196 0.98375 0.92444 1.21835 0.94594 1.00714 0.96035 0.90318 1.21951 0.90678 0.99290 0.94810 1.60540 1.06353 1.17592 1.46511 1.19649 0.95847 0.93247 0.85584 1.22029 0.91334 1.36378 1.13576 0.92576 1.25872 1.07105 0.93430 0.92565 1.70766 1.11245 1.38824 1.34259 0.83444 0.74026 0.76489 0.75617 1.21518 1.21011 1.21388 0.93118 0.91990 0.92974 0.89837 0.92435 0.93156 0.92011 0.89449 0.93639 0.91357 0.91323 0.92423 0.89931 0.95955 0.92058 0.85386 1.00753 0.96506 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.05 37.16 0.34 -1.21 16 2 C -0.09 -1.13 2.52 -90.62 -0.23 -1.35 16 3 C -0.14 -1.75 8.70 37.16 0.32 -1.42 16 4 C 0.10 1.33 1.88 -26.69 -0.05 1.28 16 5 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 6 O -0.38 -4.85 9.06 -35.23 -0.32 -5.17 16 7 C 0.06 0.68 6.84 37.20 0.25 0.93 16 8 C -0.16 -1.80 6.13 -26.60 -0.16 -1.96 16 9 C -0.11 -1.52 5.16 -26.55 -0.14 -1.66 16 10 C -0.11 -1.64 1.74 -90.48 -0.16 -1.79 16 11 H 0.08 1.18 6.31 -51.93 -0.33 0.86 16 12 C 0.06 1.10 4.90 -3.83 -0.02 1.08 16 13 N -0.68 -14.60 6.02 -115.05 -0.69 -15.30 16 14 C 0.18 4.84 4.75 -4.97 -0.02 4.82 16 15 C -0.59 -17.19 9.32 -34.44 -0.32 -17.51 16 16 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 17 C 0.01 0.40 5.46 -17.82 -0.10 0.31 16 18 N -0.91 -28.26 13.65 55.43 0.76 -27.51 16 19 Si 1.08 25.60 29.90 -169.99 -5.08 20.52 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.69 7.68 -51.93 -0.40 0.29 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 1.09 6.39 -51.93 -0.33 0.76 16 27 H 0.06 0.75 6.38 -51.93 -0.33 0.42 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.75 7.68 -51.93 -0.40 0.35 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.32 7.86 -51.93 -0.41 0.91 16 36 H 0.02 0.39 6.26 -51.92 -0.33 0.07 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.33 6.88 8.72 -39.29 -0.34 6.54 16 39 H -0.03 -0.69 8.01 -51.93 -0.42 -1.11 16 40 H 0.02 0.47 8.01 -51.93 -0.42 0.06 16 41 H 0.27 8.23 7.22 -40.82 -0.29 7.94 16 LS Contribution 316.18 15.07 4.76 4.76 Total: -1.00 -30.48 316.18 -8.28 -38.76 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -7.42 Total: 2.43 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: -0.28 Total: -18.49 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.06 Total: -42.81 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.32 Total: -5.17 kcal Atomic # 14 Polarization: 25.60 SS G_CDS: -5.08 Total: 20.52 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.48 -8.28 -38.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566792420.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.257 kcal (2) G-P(sol) polarization free energy of solvation -30.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds