Wall clock time and date at job start Sun Mar 29 2020 22:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53009 * 109.47205 * 2 1 4 4 C 1.52991 * 109.47296 * 119.99946 * 2 1 3 5 5 H 1.08998 * 109.48116 * 59.97942 * 4 2 1 6 6 O 1.42905 * 109.48106 * 299.94490 * 4 2 1 7 7 C 1.42908 * 114.09717 * 178.85831 * 6 4 2 8 8 C 1.53091 * 109.41554 * 61.15544 * 7 6 4 9 9 C 1.53171 * 109.16367 * 302.39277 * 8 7 6 10 10 C 1.53098 * 109.48303 * 180.02562 * 4 2 1 11 11 H 1.08999 * 109.52320 * 57.62195 * 10 4 2 12 12 C 1.53002 * 109.52245 * 297.49601 * 10 4 2 13 13 N 1.46895 * 109.46962 * 174.99928 * 12 10 4 14 14 C 1.46904 * 110.99508 * 180.02562 * 13 12 10 15 15 C 1.50703 * 109.46874 * 180.02562 * 14 13 12 16 16 H 1.08006 * 120.00159 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00120 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00089 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99938 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 269.99556 * 19 17 15 21 21 H 1.48503 * 109.47261 * 149.99737 * 19 17 15 22 22 H 1.48500 * 109.47454 * 29.99730 * 19 17 15 23 23 H 1.08996 * 109.46861 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.46943 * 300.00312 * 1 2 3 25 25 H 1.09000 * 109.47130 * 59.99906 * 1 2 3 26 26 H 1.09006 * 109.47156 * 240.00132 * 2 1 3 27 27 H 1.08997 * 109.47017 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.46816 * 300.00287 * 3 2 1 29 29 H 1.08994 * 109.46758 * 59.99638 * 3 2 1 30 30 H 1.09001 * 109.47842 * 181.14104 * 7 6 4 31 31 H 1.09001 * 109.47853 * 301.16090 * 7 6 4 32 32 H 1.09003 * 109.52095 * 62.29968 * 8 7 6 33 33 H 1.08999 * 109.52585 * 182.41842 * 8 7 6 34 34 H 1.09005 * 109.54382 * 297.11024 * 9 8 7 35 35 H 1.09001 * 109.54424 * 176.84579 * 9 8 7 36 36 H 1.09008 * 109.46415 * 54.99885 * 12 10 4 37 37 H 1.08997 * 109.47209 * 295.00437 * 12 10 4 38 38 H 1.00901 * 111.00172 * 303.95357 * 13 12 10 39 39 H 1.09003 * 109.47066 * 60.00292 * 14 13 12 40 40 H 1.08996 * 109.47319 * 299.99765 * 14 13 12 41 41 H 0.96998 * 119.99255 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6765 -1.7488 1.2495 6 8 1.5649 -0.0469 2.4161 7 6 1.9643 -0.6565 3.6454 8 6 3.4921 -0.6540 3.7419 9 6 4.0735 -1.3915 2.5318 10 6 3.5710 -0.7208 1.2497 11 1 3.9350 0.3058 1.2074 12 6 4.0830 -1.4954 0.0336 13 7 5.5470 -1.3933 -0.0310 14 6 6.0750 -2.1264 -1.1894 15 6 7.5763 -1.9998 -1.2222 16 1 8.0871 -1.4312 -0.4590 17 6 8.2978 -2.6089 -2.2269 18 7 7.6759 -3.3008 -3.1565 19 14 10.1588 -2.4525 -2.2670 20 1 10.5380 -1.2556 -3.0601 21 1 10.7442 -3.6659 -2.8917 22 1 10.6738 -2.3117 -0.8813 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.5463 -0.0960 4.4817 31 1 1.5995 -1.6832 3.6774 32 1 3.8549 0.3738 3.7509 33 1 3.8001 -1.1569 4.6586 34 1 3.7510 -2.4326 2.5498 35 1 5.1621 -1.3451 2.5650 36 1 3.6489 -1.0752 -0.8737 37 1 3.7953 -2.5429 0.1226 38 1 5.8418 -0.4285 -0.0490 39 1 5.6548 -1.7102 -2.1051 40 1 5.8012 -3.1784 -1.1093 41 1 6.7095 -3.3822 -3.1353 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566792420.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:51 Heat of formation + Delta-G solvation = -99.326384 kcal Electronic energy + Delta-G solvation = -18247.607424 eV Core-core repulsion = 15546.193483 eV Total energy + Delta-G solvation = -2701.413941 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.98529 -37.57649 -36.23288 -35.33302 -33.82344 -31.48050 -28.41471 -28.08205 -26.33100 -25.66747 -23.88964 -22.85981 -21.55664 -20.61163 -19.03293 -17.49098 -16.81570 -16.48886 -16.13976 -15.75434 -15.65168 -15.36797 -15.10777 -14.67687 -14.44028 -14.14265 -13.60345 -13.56955 -13.31060 -13.18427 -12.87468 -12.69104 -12.57677 -12.41429 -12.30458 -11.97497 -11.92167 -11.76174 -11.54540 -11.29748 -11.07007 -10.78417 -10.63834 -10.28952 -9.23536 -8.73293 -6.44290 1.52753 1.62260 1.80801 2.54399 2.81587 3.11553 3.36274 3.62075 3.76561 3.92687 4.03374 4.10946 4.18320 4.25980 4.30134 4.47613 4.47900 4.58517 4.60452 4.74356 4.74957 4.81083 4.84826 4.95355 4.99320 5.00030 5.02619 5.09116 5.10461 5.18708 5.32964 5.37836 5.45642 5.50531 5.69413 5.98512 6.29058 6.36444 6.51926 6.64080 7.38099 8.66499 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031674 B = 0.005067 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.800591 B = 5524.676772 C = 6053.494931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 C -0.140 4.140 4 C 0.109 3.891 5 H 0.054 0.946 6 O -0.382 6.382 7 C 0.057 3.943 8 C -0.149 4.149 9 C -0.109 4.109 10 C -0.102 4.102 11 H 0.075 0.925 12 C 0.066 3.934 13 N -0.677 5.677 14 C 0.195 3.805 15 C -0.611 4.611 16 H 0.056 0.944 17 C -0.037 4.037 18 N -0.936 5.936 19 Si 1.127 2.873 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.270 1.270 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.044 0.956 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.112 0.888 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.024 0.976 37 H 0.053 0.947 38 H 0.334 0.666 39 H -0.045 1.045 40 H -0.006 1.006 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.439 7.498 11.928 19.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.113 4.113 3 C -0.197 4.197 4 C 0.051 3.949 5 H 0.072 0.928 6 O -0.301 6.301 7 C -0.019 4.019 8 C -0.187 4.187 9 C -0.146 4.146 10 C -0.121 4.121 11 H 0.094 0.906 12 C -0.063 4.063 13 N -0.307 5.307 14 C 0.067 3.933 15 C -0.649 4.649 16 H 0.074 0.926 17 C -0.234 4.234 18 N -0.574 5.574 19 Si 0.947 3.053 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.195 1.195 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.130 0.870 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.042 0.958 37 H 0.072 0.928 38 H 0.151 0.849 39 H -0.027 1.027 40 H 0.012 0.988 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -12.130 6.699 11.529 18.026 hybrid contribution -1.455 0.413 -0.193 1.525 sum -13.585 7.112 11.336 19.069 Atomic orbital electron populations 1.21713 0.93521 1.01887 1.02294 1.21247 0.97365 0.97092 0.95578 1.21758 1.00315 0.95483 1.02151 1.21966 0.91364 0.95390 0.86223 0.92773 1.87876 1.74389 1.54096 1.13718 1.22730 0.93882 0.98608 0.86673 1.22177 0.96691 1.01313 0.98521 1.21499 1.00924 0.98642 0.93573 1.21729 0.95962 0.99798 0.94654 0.90637 1.21985 0.88210 0.99488 0.96627 1.60426 1.08932 1.17475 1.43896 1.19351 0.95109 0.92388 0.86444 1.22387 0.92648 1.36238 1.13605 0.92586 1.27501 1.11721 0.92353 0.91873 1.70903 1.10536 1.40444 1.35501 0.82814 0.68464 0.77151 0.76856 1.19603 1.20756 1.19479 0.92733 0.91987 0.91973 0.90886 0.93738 0.92181 0.91855 0.87015 0.92891 0.91524 0.89545 0.92760 0.92140 0.95820 0.92836 0.84870 1.02720 0.98799 0.93765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.05 71.98 0.65 -2.08 16 2 C -0.09 -2.23 2.52 -10.79 -0.03 -2.26 16 3 C -0.14 -3.24 8.70 71.99 0.63 -2.61 16 4 C 0.11 2.72 1.88 30.62 0.06 2.78 16 5 H 0.05 1.36 8.14 -2.39 -0.02 1.35 16 6 O -0.38 -9.02 9.06 -148.98 -1.35 -10.37 16 7 C 0.06 1.10 6.84 72.01 0.49 1.59 16 8 C -0.15 -3.13 6.13 30.68 0.19 -2.94 16 9 C -0.11 -2.99 5.16 30.71 0.16 -2.83 16 10 C -0.10 -2.93 1.74 -10.70 -0.02 -2.95 16 11 H 0.08 2.24 6.31 -2.39 -0.02 2.22 16 12 C 0.07 2.37 4.90 86.30 0.42 2.79 16 13 N -0.68 -29.63 6.02 -517.92 -3.12 -32.75 16 14 C 0.20 10.60 4.75 85.56 0.41 11.00 16 15 C -0.61 -35.68 9.32 25.60 0.24 -35.45 16 16 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 17 C -0.04 -2.18 5.46 84.65 0.46 -1.71 16 18 N -0.94 -58.75 13.65 21.45 0.29 -58.46 16 19 Si 1.13 50.80 29.90 68.60 2.05 52.85 16 20 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.06 1.25 7.68 -2.39 -0.02 1.23 16 25 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.07 1.87 6.39 -2.38 -0.02 1.86 16 27 H 0.04 1.13 6.38 -2.39 -0.02 1.11 16 28 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.06 1.44 7.68 -2.39 -0.02 1.42 16 30 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.06 1.92 7.86 -2.39 -0.02 1.90 16 36 H 0.02 0.85 6.26 -2.38 -0.01 0.84 16 37 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.33 14.11 8.72 -89.69 -0.78 13.33 16 39 H -0.04 -2.56 8.01 -2.39 -0.02 -2.58 16 40 H -0.01 -0.35 8.01 -2.39 -0.02 -0.37 16 41 H 0.25 16.14 7.22 -92.71 -0.67 15.47 16 Total: -1.00 -65.12 316.18 1.83 -63.29 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.30 Total: 20.13 kcal Atomic # 6 Polarization: -38.34 SS G_CDS: 3.66 Total: -34.68 kcal Atomic # 7 Polarization: -88.38 SS G_CDS: -2.83 Total: -91.21 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -1.35 Total: -10.37 kcal Atomic # 14 Polarization: 50.80 SS G_CDS: 2.05 Total: 52.85 kcal Total: -65.12 1.83 -63.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566792420.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.040 kcal (2) G-P(sol) polarization free energy of solvation -65.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds