Wall clock time and date at job start Sun Mar 29 2020 22:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46760 * 2 1 4 4 C 1.52999 * 109.47064 * 119.99973 * 2 1 3 5 5 H 1.09003 * 109.47760 * 185.35555 * 4 2 1 6 6 O 1.42902 * 109.48932 * 305.36636 * 4 2 1 7 7 C 1.42902 * 114.09739 * 181.13880 * 6 4 2 8 8 C 1.53097 * 109.42162 * 298.85761 * 7 6 4 9 9 C 1.53180 * 109.15875 * 57.60796 * 8 7 6 10 10 C 1.53084 * 109.48401 * 65.33063 * 4 2 1 11 11 H 1.09003 * 109.52189 * 302.29923 * 10 4 2 12 12 C 1.53001 * 109.52423 * 62.48865 * 10 4 2 13 13 N 1.46900 * 109.46926 * 183.18525 * 12 10 4 14 14 C 1.46902 * 110.99472 * 179.97438 * 13 12 10 15 15 C 1.50706 * 109.46966 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99492 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99967 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00236 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99972 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47007 * 90.00578 * 19 17 15 21 21 H 1.48493 * 109.47241 * 210.00644 * 19 17 15 22 22 H 1.48498 * 109.47246 * 330.00813 * 19 17 15 23 23 H 1.08994 * 109.47318 * 60.00049 * 1 2 3 24 24 H 1.09003 * 109.46692 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47211 * 299.99959 * 1 2 3 26 26 H 1.09000 * 109.47211 * 240.00041 * 2 1 3 27 27 H 1.09000 * 109.46896 * 175.85692 * 3 2 1 28 28 H 1.09002 * 109.46938 * 295.85475 * 3 2 1 29 29 H 1.08997 * 109.47551 * 55.85651 * 3 2 1 30 30 H 1.09006 * 109.47935 * 178.87756 * 7 6 4 31 31 H 1.08993 * 109.48526 * 58.84579 * 7 6 4 32 32 H 1.09000 * 109.51884 * 177.51012 * 8 7 6 33 33 H 1.08997 * 109.52585 * 297.70011 * 8 7 6 34 34 H 1.09001 * 109.54584 * 62.88683 * 9 8 7 35 35 H 1.09000 * 109.53640 * 183.14999 * 9 8 7 36 36 H 1.09001 * 109.46869 * 303.18752 * 12 10 4 37 37 H 1.08997 * 109.46859 * 63.18396 * 12 10 4 38 38 H 1.00899 * 110.99889 * 56.05323 * 13 12 10 39 39 H 1.09001 * 109.47425 * 300.00090 * 14 13 12 40 40 H 1.09000 * 109.47291 * 60.00386 * 14 13 12 41 41 H 0.96998 * 120.00370 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1258 -0.6390 1.2986 6 8 1.4638 -0.1246 2.4129 7 6 1.8958 -0.7093 3.6431 8 6 1.4921 -2.1858 3.6744 9 6 2.1039 -2.8999 2.4652 10 6 1.6423 -2.1981 1.1843 11 1 0.5591 -2.2800 1.0942 12 6 2.3085 -2.8543 -0.0267 13 7 1.8661 -4.2511 -0.1318 14 6 2.4866 -4.9143 -1.2865 15 6 2.0106 -6.3423 -1.3612 16 1 1.3163 -6.7192 -0.6247 17 6 2.4607 -7.1670 -2.3702 18 7 3.3057 -6.7078 -3.2672 19 14 1.8701 -8.9368 -2.4632 20 1 0.6409 -9.0055 -3.2937 21 1 2.9283 -9.7803 -3.0746 22 1 1.5715 -9.4316 -1.0953 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 3.1274 1.4434 0.0742 28 1 1.7385 1.9344 -0.9248 29 1 1.6173 1.9773 0.8505 30 1 1.4281 -0.1870 4.4778 31 1 2.9796 -0.6271 3.7240 32 1 1.8593 -2.6444 4.5925 33 1 0.4059 -2.2674 3.6345 34 1 3.1912 -2.8614 2.5306 35 1 1.7748 -3.9390 2.4505 36 1 2.0284 -2.3153 -0.9318 37 1 3.3914 -2.8241 0.0937 38 1 0.8599 -4.3091 -0.1795 39 1 2.2073 -4.3896 -2.2001 40 1 3.5708 -4.8985 -1.1753 41 1 3.6226 -7.2881 -3.9769 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566792421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:53 Heat of formation + Delta-G solvation = -76.687447 kcal Electronic energy + Delta-G solvation = -18197.299473 eV Core-core repulsion = 15496.867230 eV Total energy + Delta-G solvation = -2700.432243 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.83353 -35.85766 -35.09336 -33.40012 -32.09490 -30.25539 -27.09983 -26.91664 -25.20029 -24.24895 -21.88704 -21.19993 -20.42130 -19.47547 -16.43638 -16.37352 -15.59710 -15.07758 -14.75443 -14.50177 -14.33271 -13.93067 -13.56759 -13.29729 -12.90817 -12.70721 -12.27916 -12.10496 -11.97698 -11.66066 -11.52762 -11.24032 -11.09687 -10.92914 -10.80493 -10.73662 -10.66622 -10.34574 -10.16108 -9.95427 -9.88466 -9.25669 -9.07548 -8.47553 -7.25553 -6.02998 -4.04942 3.31756 3.37786 3.42384 3.84639 4.42989 4.74996 4.82394 4.95254 5.06120 5.08361 5.17639 5.30964 5.33064 5.37436 5.53955 5.61560 5.68987 5.74142 5.77450 5.83710 5.89572 5.96649 5.99825 6.03955 6.14170 6.18589 6.28640 6.32860 6.38069 6.52333 6.64272 6.67340 7.25418 7.33503 7.42904 7.78984 8.13523 8.40380 8.62300 9.04510 9.60066 11.08163 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031541 B = 0.005035 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.524063 B = 5559.730147 C = 6096.670874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 C -0.143 4.143 4 C 0.102 3.898 5 H 0.055 0.945 6 O -0.377 6.377 7 C 0.062 3.938 8 C -0.157 4.157 9 C -0.107 4.107 10 C -0.113 4.113 11 H 0.077 0.923 12 C 0.064 3.936 13 N -0.687 5.687 14 C 0.194 3.806 15 C -0.513 4.513 16 H 0.062 0.938 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.899 3.101 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 H 0.048 0.952 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.023 0.977 37 H 0.061 0.939 38 H 0.327 0.673 39 H -0.015 1.015 40 H 0.026 0.974 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.220 14.036 10.408 17.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 C -0.200 4.200 4 C 0.044 3.956 5 H 0.073 0.927 6 O -0.296 6.296 7 C -0.015 4.015 8 C -0.195 4.195 9 C -0.145 4.145 10 C -0.132 4.132 11 H 0.095 0.905 12 C -0.066 4.066 13 N -0.317 5.317 14 C 0.067 3.933 15 C -0.552 4.552 16 H 0.080 0.920 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.726 3.274 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.104 0.896 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.041 0.959 37 H 0.080 0.920 38 H 0.143 0.857 39 H 0.003 0.997 40 H 0.045 0.955 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.760 13.896 10.679 17.742 hybrid contribution -0.446 -0.874 -0.887 1.322 sum -3.205 13.022 9.793 16.606 Atomic orbital electron populations 1.21755 0.94689 1.01962 1.01493 1.21254 0.96953 0.96311 0.96559 1.21785 1.00604 0.96007 1.01622 1.22111 0.96245 0.91810 0.85442 0.92744 1.87873 1.69703 1.58527 1.13484 1.22519 0.98594 0.93555 0.86822 1.22233 1.01730 0.96148 0.99360 1.21518 0.99993 1.00625 0.92349 1.21822 1.01246 0.93909 0.96196 0.90521 1.21922 0.99470 0.90533 0.94650 1.60646 1.11985 1.11790 1.47285 1.19542 0.95190 0.93313 0.85215 1.21190 1.26995 0.95851 1.11157 0.91998 1.24991 0.95175 0.98866 0.95559 1.69962 1.32288 1.36301 1.15257 0.86489 0.78263 0.84373 0.78226 1.20731 1.21249 1.19780 0.93240 0.92523 0.92021 0.89604 0.93058 0.92970 0.92202 0.89540 0.93661 0.91391 0.91403 0.92394 0.89875 0.95940 0.92013 0.85684 0.99701 0.95540 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.76 37.16 0.33 -1.39 16 2 C -0.09 -1.15 2.59 -90.62 -0.23 -1.38 16 3 C -0.14 -1.56 9.05 37.16 0.34 -1.23 16 4 C 0.10 1.34 1.82 -26.69 -0.05 1.29 16 5 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 6 O -0.38 -4.89 9.14 -35.23 -0.32 -5.21 16 7 C 0.06 0.68 6.84 37.21 0.25 0.94 16 8 C -0.16 -1.81 6.14 -26.59 -0.16 -1.98 16 9 C -0.11 -1.51 5.14 -26.55 -0.14 -1.65 16 10 C -0.11 -1.64 1.85 -90.49 -0.17 -1.80 16 11 H 0.08 1.15 6.48 -51.93 -0.34 0.81 16 12 C 0.06 1.13 4.89 -3.82 -0.02 1.11 16 13 N -0.69 -14.61 5.95 -115.05 -0.68 -15.30 16 14 C 0.19 5.12 5.44 -4.97 -0.03 5.09 16 15 C -0.51 -14.63 9.32 -34.44 -0.32 -14.95 16 16 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 19 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.72 6.53 -51.93 -0.34 0.38 16 25 H 0.06 0.75 7.55 -51.93 -0.39 0.36 16 26 H 0.09 1.13 6.18 -51.93 -0.32 0.81 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.66 7.94 -51.93 -0.41 0.25 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.32 7.81 -51.93 -0.41 0.91 16 36 H 0.02 0.40 6.24 -51.93 -0.32 0.08 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.33 6.71 8.72 -39.29 -0.34 6.37 16 39 H -0.01 -0.41 8.14 -51.93 -0.42 -0.84 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 LS Contribution 317.80 15.07 4.79 4.79 Total: -1.00 -29.63 317.80 -8.29 -37.92 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -7.49 Total: 1.79 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -0.30 Total: -14.45 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.05 Total: -41.60 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.32 Total: -5.21 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.63 -8.29 -37.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566792421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.769 kcal (2) G-P(sol) polarization free energy of solvation -29.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds