Wall clock time and date at job start Sun Mar 29 2020 22:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00489 * 2 1 3 5 5 C 1.52999 * 109.46811 * 294.99812 * 4 2 1 6 6 H 1.08997 * 109.48004 * 55.00256 * 5 4 2 7 7 C 1.53095 * 109.47985 * 175.02274 * 5 4 2 8 8 C 1.53180 * 109.16091 * 177.57923 * 7 5 4 9 9 H 1.09003 * 109.61153 * 183.12244 * 8 7 5 10 10 N 1.46894 * 109.53538 * 62.90427 * 8 7 5 11 11 C 1.46902 * 110.99995 * 155.43509 * 10 8 7 12 12 C 1.50702 * 109.46858 * 179.97438 * 11 10 8 13 13 H 1.08001 * 120.00321 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99641 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00231 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99784 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47198 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47115 * 120.00375 * 16 14 12 19 19 H 1.48506 * 109.46795 * 240.00334 * 16 14 12 20 20 C 1.53181 * 109.04638 * 303.03754 * 8 7 5 21 21 C 1.53085 * 109.16456 * 56.97420 * 20 8 7 22 22 O 1.42902 * 109.41893 * 302.39442 * 21 20 8 23 23 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 27 27 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 28 28 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 30 30 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 31 31 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 32 32 H 1.08997 * 109.52103 * 297.50125 * 7 5 4 33 33 H 1.09003 * 109.52239 * 57.68403 * 7 5 4 34 34 H 1.00901 * 111.00077 * 279.39393 * 10 8 7 35 35 H 1.08999 * 109.47007 * 299.99841 * 11 10 8 36 36 H 1.08991 * 109.46843 * 60.00469 * 11 10 8 37 37 H 0.97000 * 119.99664 * 179.97438 * 15 14 12 38 38 H 1.09003 * 109.51721 * 297.06729 * 20 8 7 39 39 H 1.09000 * 109.57240 * 176.91676 * 20 8 7 40 40 H 1.09000 * 109.48222 * 182.41005 * 21 20 8 41 41 H 1.09003 * 109.48151 * 62.37545 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6352 -2.1954 -1.1881 6 1 0.5563 -2.2708 -1.0529 7 6 2.0360 -2.8895 -2.4925 8 6 1.6825 -4.3770 -2.3997 9 1 2.0150 -4.8891 -3.3026 10 7 0.2284 -4.5283 -2.2561 11 6 -0.2137 -5.8449 -2.7348 12 6 -1.7071 -5.9632 -2.5714 13 1 -2.2715 -5.1423 -2.1540 14 6 -2.3532 -7.1190 -2.9557 15 7 -1.6661 -8.1184 -3.4643 16 14 -4.2045 -7.2655 -2.7538 17 1 -4.7387 -6.0122 -2.1629 18 1 -4.8308 -7.4927 -4.0809 19 1 -4.5158 -8.4079 -1.8574 20 6 2.3836 -4.9822 -1.1796 21 6 1.9692 -4.2073 0.0739 22 8 2.2983 -2.8265 -0.0907 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6054 -0.2616 -2.1371 31 1 3.1263 -0.6443 -1.2952 32 1 1.4973 -2.4381 -3.3257 33 1 3.1091 -2.7793 -2.6490 34 1 -0.0584 -4.3758 -1.3008 35 1 0.0468 -5.9550 -3.7875 36 1 0.2778 -6.6261 -2.1551 37 1 -2.1207 -8.9317 -3.7343 38 1 3.4637 -4.9144 -1.3094 39 1 2.0945 -6.0279 -1.0737 40 1 2.4981 -4.6064 0.9394 41 1 0.8946 -4.3092 0.2256 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569096499.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:11 Heat of formation + Delta-G solvation = -77.334480 kcal Electronic energy + Delta-G solvation = -18228.119341 eV Core-core repulsion = 15527.659041 eV Total energy + Delta-G solvation = -2700.460300 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.61298 -36.40211 -35.12505 -32.82916 -31.45128 -30.36091 -27.22402 -27.03949 -25.84745 -23.69750 -22.24014 -21.81016 -19.82215 -18.85595 -16.56671 -16.06836 -15.78792 -15.06014 -14.73832 -14.63895 -14.26532 -13.96405 -13.58323 -13.17696 -13.02003 -12.26943 -12.10310 -12.05781 -11.85702 -11.82390 -11.62934 -11.26450 -11.18496 -11.00608 -10.82698 -10.64583 -10.54975 -10.53387 -10.31852 -9.97004 -9.76719 -9.15073 -8.97566 -8.50836 -7.30990 -6.05273 -4.07249 3.29420 3.36851 3.41829 4.02982 4.41430 4.76263 4.96975 5.00211 5.11131 5.22698 5.30699 5.32256 5.38617 5.45609 5.49482 5.59027 5.62188 5.76922 5.79598 5.86327 5.90777 5.96081 5.99799 6.04576 6.18023 6.21916 6.33992 6.36157 6.43539 6.45070 6.50231 6.60822 7.24251 7.41353 7.53978 7.76822 8.10885 8.35873 8.58870 9.02272 9.57963 11.05779 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028346 B = 0.005413 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.559151 B = 5171.627201 C = 5735.011264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.104 4.104 5 C 0.089 3.911 6 H 0.070 0.930 7 C -0.134 4.134 8 C 0.082 3.918 9 H 0.074 0.926 10 N -0.684 5.684 11 C 0.193 3.807 12 C -0.514 4.514 13 H 0.062 0.938 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.898 3.102 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.285 1.285 20 C -0.185 4.185 21 C 0.064 3.936 22 O -0.384 6.384 23 H 0.049 0.951 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.326 0.674 35 H 0.027 0.973 36 H -0.013 1.013 37 H 0.261 0.739 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.184 13.435 6.143 16.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.142 4.142 5 C 0.032 3.968 6 H 0.088 0.912 7 C -0.172 4.172 8 C -0.029 4.029 9 H 0.092 0.908 10 N -0.315 5.315 11 C 0.067 3.933 12 C -0.553 4.553 13 H 0.080 0.920 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.726 3.274 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.225 4.225 21 C -0.013 4.013 22 O -0.303 6.303 23 H 0.069 0.931 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.145 0.855 35 H 0.045 0.955 36 H 0.005 0.995 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.129 13.670 5.579 16.855 hybrid contribution -0.812 -1.147 0.507 1.494 sum 7.317 12.523 6.086 15.729 Atomic orbital electron populations 1.21905 0.95328 1.02223 1.01264 1.21071 0.95793 0.95512 0.99022 1.21845 1.00714 0.96394 1.01389 1.21663 1.01299 0.93151 0.98077 1.22163 0.96843 0.91704 0.86127 0.91205 1.22184 1.00521 0.96281 0.98263 1.21557 0.90020 0.94544 0.96769 0.90765 1.60839 1.08610 1.35678 1.26342 1.19585 0.95335 0.83002 0.95402 1.21223 0.92377 1.00247 1.41403 0.92014 1.24985 0.98586 0.95687 0.95265 1.69972 1.35634 1.05305 1.42799 0.86446 0.85251 0.77984 0.77763 1.19657 1.20982 1.21086 1.22817 1.01291 1.00863 0.97485 1.22473 0.99842 0.81600 0.97358 1.87831 1.69401 1.22971 1.50104 0.93142 0.92101 0.92847 0.90565 0.93011 0.92947 0.92930 0.90769 0.91609 0.90566 0.92048 0.85537 0.95471 0.99533 0.92970 0.91591 0.90784 0.89468 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.96 37.16 0.33 -1.35 16 2 C -0.10 -1.06 2.87 -90.62 -0.26 -1.32 16 3 C -0.15 -1.37 9.19 37.16 0.34 -1.02 16 4 C -0.10 -1.25 4.39 -26.73 -0.12 -1.36 16 5 C 0.09 1.28 2.26 -26.68 -0.06 1.21 16 6 H 0.07 1.10 5.57 -51.93 -0.29 0.81 16 7 C -0.13 -2.03 5.12 -26.59 -0.14 -2.17 16 8 C 0.08 1.46 2.89 -67.53 -0.19 1.27 16 9 H 0.07 1.40 7.81 -51.93 -0.41 0.99 16 10 N -0.68 -14.46 5.86 -107.80 -0.63 -15.09 16 11 C 0.19 5.03 5.24 -4.97 -0.03 5.00 16 12 C -0.51 -14.52 9.32 -34.44 -0.32 -14.84 16 13 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 16 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 C -0.19 -2.97 5.72 -26.59 -0.15 -3.12 16 21 C 0.06 0.96 6.58 37.20 0.24 1.20 16 22 O -0.38 -5.81 9.86 -35.23 -0.35 -6.16 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.76 6.46 -51.93 -0.34 0.43 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 0.94 7.70 -51.93 -0.40 0.54 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.33 6.70 5.80 -39.29 -0.23 6.47 16 35 H 0.03 0.77 8.06 -51.93 -0.42 0.35 16 36 H -0.01 -0.36 7.40 -51.93 -0.38 -0.74 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 1.29 7.41 -51.93 -0.38 0.90 16 40 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.05 0.82 6.43 -51.93 -0.33 0.48 16 LS Contribution 316.17 15.07 4.76 4.76 Total: -1.00 -29.30 316.17 -8.32 -37.62 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -7.37 Total: 3.25 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -0.45 Total: -15.00 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 0.10 Total: -41.13 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -0.35 Total: -6.16 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.30 -8.32 -37.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569096499.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.711 kcal (2) G-P(sol) polarization free energy of solvation -29.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds