Wall clock time and date at job start Sun Mar 29 2020 22:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00489 * 2 1 3 5 5 C 1.52999 * 109.46811 * 294.99812 * 4 2 1 6 6 H 1.08997 * 109.48004 * 55.00256 * 5 4 2 7 7 C 1.53095 * 109.47985 * 175.02274 * 5 4 2 8 8 C 1.53180 * 109.16091 * 177.57923 * 7 5 4 9 9 H 1.09003 * 109.61153 * 183.12244 * 8 7 5 10 10 N 1.46894 * 109.53538 * 62.90427 * 8 7 5 11 11 C 1.46902 * 110.99995 * 155.43509 * 10 8 7 12 12 C 1.50702 * 109.46858 * 179.97438 * 11 10 8 13 13 H 1.08001 * 120.00321 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99641 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00231 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99784 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47198 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47115 * 120.00375 * 16 14 12 19 19 H 1.48506 * 109.46795 * 240.00334 * 16 14 12 20 20 C 1.53181 * 109.04638 * 303.03754 * 8 7 5 21 21 C 1.53085 * 109.16456 * 56.97420 * 20 8 7 22 22 O 1.42902 * 109.41893 * 302.39442 * 21 20 8 23 23 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 27 27 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 28 28 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 30 30 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 31 31 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 32 32 H 1.08997 * 109.52103 * 297.50125 * 7 5 4 33 33 H 1.09003 * 109.52239 * 57.68403 * 7 5 4 34 34 H 1.00901 * 111.00077 * 279.39393 * 10 8 7 35 35 H 1.08999 * 109.47007 * 299.99841 * 11 10 8 36 36 H 1.08991 * 109.46843 * 60.00469 * 11 10 8 37 37 H 0.97000 * 119.99664 * 179.97438 * 15 14 12 38 38 H 1.09003 * 109.51721 * 297.06729 * 20 8 7 39 39 H 1.09000 * 109.57240 * 176.91676 * 20 8 7 40 40 H 1.09000 * 109.48222 * 182.41005 * 21 20 8 41 41 H 1.09003 * 109.48151 * 62.37545 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6352 -2.1954 -1.1881 6 1 0.5563 -2.2708 -1.0529 7 6 2.0360 -2.8895 -2.4925 8 6 1.6825 -4.3770 -2.3997 9 1 2.0150 -4.8891 -3.3026 10 7 0.2284 -4.5283 -2.2561 11 6 -0.2137 -5.8449 -2.7348 12 6 -1.7071 -5.9632 -2.5714 13 1 -2.2715 -5.1423 -2.1540 14 6 -2.3532 -7.1190 -2.9557 15 7 -1.6661 -8.1184 -3.4643 16 14 -4.2045 -7.2655 -2.7538 17 1 -4.7387 -6.0122 -2.1629 18 1 -4.8308 -7.4927 -4.0809 19 1 -4.5158 -8.4079 -1.8574 20 6 2.3836 -4.9822 -1.1796 21 6 1.9692 -4.2073 0.0739 22 8 2.2983 -2.8265 -0.0907 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6054 -0.2616 -2.1371 31 1 3.1263 -0.6443 -1.2952 32 1 1.4973 -2.4381 -3.3257 33 1 3.1091 -2.7793 -2.6490 34 1 -0.0584 -4.3758 -1.3008 35 1 0.0468 -5.9550 -3.7875 36 1 0.2778 -6.6261 -2.1551 37 1 -2.1207 -8.9317 -3.7343 38 1 3.4637 -4.9144 -1.3094 39 1 2.0945 -6.0279 -1.0737 40 1 2.4981 -4.6064 0.9394 41 1 0.8946 -4.3092 0.2256 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569096499.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:10 Heat of formation + Delta-G solvation = -95.326064 kcal Electronic energy + Delta-G solvation = -18228.899515 eV Core-core repulsion = 15527.659041 eV Total energy + Delta-G solvation = -2701.240474 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.89056 -37.56601 -36.52578 -34.84187 -32.66470 -32.02621 -28.52426 -27.98218 -27.55058 -25.00071 -23.94173 -23.31806 -20.74425 -20.28281 -18.59018 -17.27990 -17.18466 -16.62009 -16.34256 -15.83338 -15.67599 -15.22500 -14.99828 -14.50018 -14.10053 -13.92688 -13.59733 -13.52603 -13.05196 -12.97131 -12.88563 -12.73409 -12.71273 -12.42173 -12.24407 -12.16079 -11.94958 -11.62294 -11.52742 -11.42193 -11.33545 -10.87214 -10.68088 -10.24158 -9.11433 -8.24287 -6.35454 1.39708 1.40498 1.54246 2.38513 2.86888 3.09212 3.52868 3.72409 3.88774 3.99108 4.02998 4.11819 4.17198 4.28910 4.39411 4.42702 4.67056 4.75299 4.80168 4.85878 4.88335 4.91516 4.93101 4.95328 5.04797 5.12317 5.16967 5.17820 5.20640 5.25204 5.36383 5.40873 5.54406 5.60291 5.60890 6.00850 6.33622 6.41852 6.69538 6.86669 7.35738 8.87384 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028346 B = 0.005413 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.559151 B = 5171.627201 C = 5735.011264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.142 4.142 4 C -0.100 4.100 5 C 0.090 3.910 6 H 0.054 0.946 7 C -0.126 4.126 8 C 0.075 3.925 9 H 0.058 0.942 10 N -0.680 5.680 11 C 0.210 3.790 12 C -0.535 4.535 13 H 0.062 0.938 14 C 0.003 3.997 15 N -0.933 5.933 16 Si 0.972 3.028 17 H -0.263 1.263 18 H -0.278 1.278 19 H -0.277 1.277 20 C -0.178 4.178 21 C 0.067 3.933 22 O -0.384 6.384 23 H 0.059 0.941 24 H 0.041 0.959 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.331 0.669 35 H -0.003 1.003 36 H -0.036 1.036 37 H 0.265 0.735 38 H 0.084 0.916 39 H 0.054 0.946 40 H 0.111 0.889 41 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.074 14.961 6.870 18.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.112 4.112 3 C -0.199 4.199 4 C -0.137 4.137 5 C 0.032 3.968 6 H 0.072 0.928 7 C -0.164 4.164 8 C -0.035 4.035 9 H 0.076 0.924 10 N -0.311 5.311 11 C 0.082 3.918 12 C -0.573 4.573 13 H 0.080 0.920 14 C -0.195 4.195 15 N -0.574 5.574 16 Si 0.796 3.204 17 H -0.187 1.187 18 H -0.204 1.204 19 H -0.202 1.202 20 C -0.218 4.218 21 C -0.010 4.010 22 O -0.303 6.303 23 H 0.078 0.922 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.150 0.850 35 H 0.015 0.985 36 H -0.019 1.019 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.073 0.927 40 H 0.129 0.871 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.037 15.218 6.314 18.332 hybrid contribution -0.720 -1.622 0.267 1.795 sum 7.316 13.596 6.581 16.784 Atomic orbital electron populations 1.21898 0.95577 1.01199 1.01996 1.21035 0.95554 0.96586 0.98001 1.21804 1.01057 0.94979 1.02099 1.21660 1.01833 0.91279 0.98953 1.22202 0.96012 0.93189 0.85355 0.92781 1.22129 1.01619 0.93887 0.98811 1.21680 0.88034 0.96780 0.97031 0.92375 1.60728 1.11213 1.32583 1.26606 1.19203 0.94606 0.84672 0.93293 1.21560 0.93473 1.00582 1.41709 0.91966 1.25929 1.03860 0.95161 0.94586 1.70095 1.37861 1.05936 1.43473 0.85301 0.78787 0.78359 0.77952 1.18702 1.20380 1.20242 1.22727 1.02154 0.99701 0.97188 1.22490 0.99411 0.81639 0.97494 1.87846 1.69325 1.22790 1.50331 0.92189 0.93964 0.92374 0.91768 0.92290 0.92390 0.92277 0.89834 0.90852 0.90761 0.90162 0.85026 0.98488 1.01876 0.92616 0.89691 0.92708 0.87137 0.94287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 8.96 71.98 0.64 -2.51 16 2 C -0.09 -1.90 2.87 -10.79 -0.03 -1.93 16 3 C -0.14 -2.29 9.19 71.98 0.66 -1.63 16 4 C -0.10 -2.18 4.39 30.60 0.13 -2.04 16 5 C 0.09 2.46 2.26 30.63 0.07 2.53 16 6 H 0.05 1.68 5.57 -2.39 -0.01 1.66 16 7 C -0.13 -3.69 5.12 30.69 0.16 -3.53 16 8 C 0.08 2.70 2.89 45.04 0.13 2.83 16 9 H 0.06 2.25 7.81 -2.39 -0.02 2.24 16 10 N -0.68 -29.44 5.86 -494.97 -2.90 -32.34 16 11 C 0.21 11.35 5.24 85.56 0.45 11.80 16 12 C -0.54 -30.74 9.32 25.60 0.24 -30.51 16 13 H 0.06 3.49 7.81 -2.91 -0.02 3.47 16 14 C 0.00 0.17 5.46 84.66 0.46 0.63 16 15 N -0.93 -56.60 13.29 21.45 0.28 -56.32 16 16 Si 0.97 44.44 29.54 68.60 2.03 46.46 16 17 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 20 C -0.18 -5.67 5.72 30.68 0.18 -5.50 16 21 C 0.07 1.93 6.58 72.01 0.47 2.40 16 22 O -0.38 -11.02 9.86 -148.98 -1.47 -12.49 16 23 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.04 1.04 6.46 -2.39 -0.02 1.02 16 25 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 26 H 0.06 1.47 7.70 -2.39 -0.02 1.45 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.33 13.86 5.80 -89.69 -0.52 13.34 16 35 H 0.00 -0.18 8.06 -2.39 -0.02 -0.20 16 36 H -0.04 -2.10 7.40 -2.39 -0.02 -2.12 16 37 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 38 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.05 1.95 7.41 -2.39 -0.02 1.93 16 40 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 41 H 0.04 1.23 6.43 -2.39 -0.02 1.21 16 Total: -1.00 -62.73 316.17 1.96 -60.77 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.46 Total: 21.39 kcal Atomic # 6 Polarization: -31.02 SS G_CDS: 3.56 Total: -27.46 kcal Atomic # 7 Polarization: -86.05 SS G_CDS: -2.61 Total: -88.66 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: -1.47 Total: -12.49 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -62.73 1.96 -60.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569096499.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.561 kcal (2) G-P(sol) polarization free energy of solvation -62.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds