Wall clock time and date at job start Sun Mar 29 2020 22:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47030 * 2 1 4 4 C 1.53004 * 109.47222 * 120.00529 * 2 1 3 5 5 C 1.52999 * 109.47212 * 64.99423 * 4 2 1 6 6 H 1.08999 * 109.48227 * 304.98037 * 5 4 2 7 7 C 1.53092 * 109.48062 * 184.94215 * 5 4 2 8 8 C 1.53175 * 109.16344 * 182.41091 * 7 5 4 9 9 H 1.09005 * 109.54265 * 176.84854 * 8 7 5 10 10 N 1.46895 * 109.54357 * 297.02693 * 8 7 5 11 11 C 1.46905 * 110.99788 * 205.00140 * 10 8 7 12 12 C 1.50706 * 109.46994 * 180.02562 * 11 10 8 13 13 H 1.08001 * 120.00226 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99947 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00210 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 120.00274 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47322 * 89.99651 * 16 14 12 18 18 H 1.48497 * 109.47361 * 210.00262 * 16 14 12 19 19 H 1.48505 * 109.46980 * 330.00007 * 16 14 12 20 20 C 1.53180 * 109.03606 * 56.98567 * 8 7 5 21 21 C 1.53098 * 109.16075 * 303.01560 * 20 8 7 22 22 O 1.42905 * 109.41155 * 57.61062 * 21 20 8 23 23 H 1.09002 * 109.47160 * 299.99408 * 1 2 3 24 24 H 1.08996 * 109.47421 * 59.99825 * 1 2 3 25 25 H 1.09006 * 109.47121 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46892 * 240.00113 * 2 1 3 27 27 H 1.09001 * 109.46977 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47615 * 300.00198 * 3 2 1 29 29 H 1.09003 * 109.47190 * 60.00296 * 3 2 1 30 30 H 1.08998 * 109.46635 * 305.00042 * 4 2 1 31 31 H 1.08999 * 109.47004 * 185.00310 * 4 2 1 32 32 H 1.09004 * 109.52333 * 302.32306 * 7 5 4 33 33 H 1.08998 * 109.51897 * 62.50470 * 7 5 4 34 34 H 1.00895 * 110.99892 * 328.95156 * 10 8 7 35 35 H 1.09004 * 109.47026 * 299.99462 * 11 10 8 36 36 H 1.08998 * 109.47370 * 60.00309 * 11 10 8 37 37 H 0.97005 * 120.00119 * 179.97438 * 15 14 12 38 38 H 1.08996 * 109.52502 * 62.92172 * 20 8 7 39 39 H 1.08995 * 109.52068 * 183.05420 * 20 8 7 40 40 H 1.09000 * 109.48092 * 297.63128 * 21 20 8 41 41 H 1.08993 * 109.47885 * 177.58982 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6352 -2.1956 1.1879 6 1 0.5562 -2.2709 1.0531 7 6 2.0368 -2.8900 2.4918 8 6 1.6829 -4.3774 2.3990 9 1 2.0170 -4.8887 3.3019 10 7 0.2286 -4.5287 2.2581 11 6 -0.2139 -5.8415 2.7468 12 6 -1.7076 -5.9600 2.5859 13 1 -2.2719 -5.1418 2.1634 14 6 -2.3538 -7.1130 2.9781 15 7 -3.6574 -7.2163 2.8383 16 14 -1.3781 -8.5281 3.7096 17 1 -1.3004 -8.3660 5.1837 18 1 -2.0509 -9.8121 3.3875 19 1 -0.0070 -8.5309 3.1391 20 6 2.3836 -4.9824 1.1786 21 6 1.9686 -4.2072 -0.0747 22 8 2.2979 -2.8264 0.0902 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6054 -0.2619 2.1369 31 1 3.1263 -0.6444 1.2951 32 1 3.1100 -2.7798 2.6476 33 1 1.4986 -2.4388 3.3254 34 1 -0.2599 -3.7834 2.7312 35 1 0.2765 -6.6273 2.1720 36 1 0.0478 -5.9443 3.7999 37 1 -4.1120 -8.0277 3.1139 38 1 3.4637 -4.9146 1.3078 39 1 2.0942 -6.0280 1.0737 40 1 0.8939 -4.3091 -0.2259 41 1 2.4971 -4.6061 -0.9404 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569096500.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:12 Heat of formation + Delta-G solvation = -73.988986 kcal Electronic energy + Delta-G solvation = -18249.568784 eV Core-core repulsion = 15549.253555 eV Total energy + Delta-G solvation = -2700.315229 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.49601 -36.37068 -35.25822 -32.77588 -31.42720 -30.74443 -27.40575 -27.12848 -26.07737 -23.65478 -22.19501 -21.29800 -19.80614 -19.03847 -16.79563 -16.04719 -15.84578 -15.11644 -14.88284 -14.47091 -14.31498 -13.95856 -13.68294 -13.18012 -12.72283 -12.53170 -12.29541 -12.25252 -12.06398 -11.90163 -11.68074 -11.62082 -11.15932 -10.98748 -10.77059 -10.58723 -10.53131 -10.41657 -10.20130 -9.87086 -9.68165 -9.28791 -9.05830 -8.61649 -7.51283 -6.08398 -4.06396 3.25895 3.33822 3.36145 4.10220 4.39457 4.70088 4.93415 4.97613 5.01388 5.16602 5.23703 5.27496 5.39324 5.46511 5.53743 5.61963 5.66432 5.77889 5.80844 5.87453 5.89002 5.93772 5.99638 6.05152 6.18028 6.22925 6.29306 6.32414 6.40118 6.43580 6.50420 6.59086 6.76657 6.98721 7.58803 7.62782 7.86500 8.29354 8.61906 8.99469 9.53706 11.04884 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.033230 B = 0.005429 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.415537 B = 5155.939280 C = 5577.387625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.107 4.107 5 C 0.096 3.904 6 H 0.074 0.926 7 C -0.149 4.149 8 C 0.079 3.921 9 H 0.037 0.963 10 N -0.674 5.674 11 C 0.165 3.835 12 C -0.515 4.515 13 H 0.079 0.921 14 C 0.069 3.931 15 N -0.900 5.900 16 Si 0.877 3.123 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.267 1.267 20 C -0.140 4.140 21 C 0.071 3.929 22 O -0.385 6.385 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.335 0.665 35 H 0.026 0.974 36 H -0.022 1.022 37 H 0.264 0.736 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.757 12.103 -3.381 17.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 C -0.204 4.204 4 C -0.144 4.144 5 C 0.038 3.962 6 H 0.092 0.908 7 C -0.187 4.187 8 C -0.032 4.032 9 H 0.055 0.945 10 N -0.305 5.305 11 C 0.037 3.963 12 C -0.554 4.554 13 H 0.097 0.903 14 C -0.133 4.133 15 N -0.539 5.539 16 Si 0.705 3.295 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.192 1.192 20 C -0.178 4.178 21 C -0.006 4.006 22 O -0.305 6.305 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.153 0.847 35 H 0.044 0.956 36 H -0.004 1.004 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.762 11.869 -4.124 17.910 hybrid contribution 0.311 -1.050 1.689 2.013 sum 13.074 10.819 -2.435 17.143 Atomic orbital electron populations 1.21913 0.95249 1.02399 1.01237 1.21057 0.95849 0.95424 0.98991 1.21847 1.00677 0.96438 1.01390 1.21687 1.01271 0.93368 0.98080 1.22045 0.97262 0.91166 0.85713 0.90830 1.22372 1.01618 0.96077 0.98629 1.21523 0.90997 0.94226 0.96420 0.94517 1.60542 1.01505 1.06103 1.62364 1.20044 0.96990 0.87243 0.92039 1.21051 0.90031 1.02841 1.41435 0.90323 1.24899 0.94746 0.98223 0.95412 1.69898 1.07903 1.27961 1.48125 0.86831 0.80683 0.82282 0.79723 1.20394 1.21140 1.19224 1.22108 0.98889 1.00611 0.96230 1.22418 1.01245 0.80626 0.96282 1.87794 1.69274 1.23703 1.49696 0.92970 0.93087 0.91873 0.90447 0.92986 0.92960 0.92995 0.91018 0.91672 0.91416 0.91379 0.84711 0.95599 1.00402 0.92644 0.92223 0.90995 0.91285 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.95 37.16 0.33 -1.37 16 2 C -0.09 -1.05 2.87 -90.62 -0.26 -1.31 16 3 C -0.15 -1.36 9.19 37.15 0.34 -1.02 16 4 C -0.11 -1.23 4.39 -26.73 -0.12 -1.35 16 5 C 0.10 1.34 2.35 -26.68 -0.06 1.27 16 6 H 0.07 1.14 5.95 -51.93 -0.31 0.83 16 7 C -0.15 -2.08 4.81 -26.59 -0.13 -2.21 16 8 C 0.08 1.32 2.84 -67.53 -0.19 1.13 16 9 H 0.04 0.64 7.80 -51.93 -0.41 0.23 16 10 N -0.67 -13.46 5.10 -107.79 -0.55 -14.01 16 11 C 0.16 3.94 4.31 -4.97 -0.02 3.92 16 12 C -0.52 -14.59 9.87 -34.44 -0.34 -14.93 16 13 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 14 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 15 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 16 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 19 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 20 C -0.14 -2.21 5.75 -26.59 -0.15 -2.36 16 21 C 0.07 1.09 6.68 37.21 0.25 1.34 16 22 O -0.39 -5.90 9.86 -35.23 -0.35 -6.25 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.81 6.46 -51.93 -0.34 0.47 16 26 H 0.08 0.96 7.70 -51.93 -0.40 0.56 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.89 8.07 -51.93 -0.42 0.48 16 34 H 0.33 6.54 8.31 -39.29 -0.33 6.21 16 35 H 0.03 0.64 6.49 -51.93 -0.34 0.30 16 36 H -0.02 -0.52 7.48 -51.93 -0.39 -0.91 16 37 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.07 1.22 7.44 -51.93 -0.39 0.83 16 40 H 0.07 1.21 7.75 -51.93 -0.40 0.80 16 41 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 315.87 15.07 4.76 4.76 Total: -1.00 -29.68 315.87 -8.01 -37.69 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -7.53 Total: 2.68 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -0.45 Total: -14.98 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.22 Total: -40.81 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: -0.35 Total: -6.25 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.68 -8.01 -37.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569096500.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.298 kcal (2) G-P(sol) polarization free energy of solvation -29.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds