Wall clock time and date at job start Sun Mar 29 2020 22:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47030 * 2 1 4 4 C 1.53004 * 109.47222 * 120.00529 * 2 1 3 5 5 C 1.52999 * 109.47212 * 64.99423 * 4 2 1 6 6 H 1.08999 * 109.48227 * 304.98037 * 5 4 2 7 7 C 1.53092 * 109.48062 * 184.94215 * 5 4 2 8 8 C 1.53175 * 109.16344 * 182.41091 * 7 5 4 9 9 H 1.09005 * 109.54265 * 176.84854 * 8 7 5 10 10 N 1.46895 * 109.54357 * 297.02693 * 8 7 5 11 11 C 1.46905 * 110.99788 * 205.00140 * 10 8 7 12 12 C 1.50706 * 109.46994 * 180.02562 * 11 10 8 13 13 H 1.08001 * 120.00226 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99947 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00210 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 120.00274 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47322 * 89.99651 * 16 14 12 18 18 H 1.48497 * 109.47361 * 210.00262 * 16 14 12 19 19 H 1.48505 * 109.46980 * 330.00007 * 16 14 12 20 20 C 1.53180 * 109.03606 * 56.98567 * 8 7 5 21 21 C 1.53098 * 109.16075 * 303.01560 * 20 8 7 22 22 O 1.42905 * 109.41155 * 57.61062 * 21 20 8 23 23 H 1.09002 * 109.47160 * 299.99408 * 1 2 3 24 24 H 1.08996 * 109.47421 * 59.99825 * 1 2 3 25 25 H 1.09006 * 109.47121 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46892 * 240.00113 * 2 1 3 27 27 H 1.09001 * 109.46977 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47615 * 300.00198 * 3 2 1 29 29 H 1.09003 * 109.47190 * 60.00296 * 3 2 1 30 30 H 1.08998 * 109.46635 * 305.00042 * 4 2 1 31 31 H 1.08999 * 109.47004 * 185.00310 * 4 2 1 32 32 H 1.09004 * 109.52333 * 302.32306 * 7 5 4 33 33 H 1.08998 * 109.51897 * 62.50470 * 7 5 4 34 34 H 1.00895 * 110.99892 * 328.95156 * 10 8 7 35 35 H 1.09004 * 109.47026 * 299.99462 * 11 10 8 36 36 H 1.08998 * 109.47370 * 60.00309 * 11 10 8 37 37 H 0.97005 * 120.00119 * 179.97438 * 15 14 12 38 38 H 1.08996 * 109.52502 * 62.92172 * 20 8 7 39 39 H 1.08995 * 109.52068 * 183.05420 * 20 8 7 40 40 H 1.09000 * 109.48092 * 297.63128 * 21 20 8 41 41 H 1.08993 * 109.47885 * 177.58982 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6352 -2.1956 1.1879 6 1 0.5562 -2.2709 1.0531 7 6 2.0368 -2.8900 2.4918 8 6 1.6829 -4.3774 2.3990 9 1 2.0170 -4.8887 3.3019 10 7 0.2286 -4.5287 2.2581 11 6 -0.2139 -5.8415 2.7468 12 6 -1.7076 -5.9600 2.5859 13 1 -2.2719 -5.1418 2.1634 14 6 -2.3538 -7.1130 2.9781 15 7 -3.6574 -7.2163 2.8383 16 14 -1.3781 -8.5281 3.7096 17 1 -1.3004 -8.3660 5.1837 18 1 -2.0509 -9.8121 3.3875 19 1 -0.0070 -8.5309 3.1391 20 6 2.3836 -4.9824 1.1786 21 6 1.9686 -4.2072 -0.0747 22 8 2.2979 -2.8264 0.0902 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6054 -0.2619 2.1369 31 1 3.1263 -0.6444 1.2951 32 1 3.1100 -2.7798 2.6476 33 1 1.4986 -2.4388 3.3254 34 1 -0.2599 -3.7834 2.7312 35 1 0.2765 -6.6273 2.1720 36 1 0.0478 -5.9443 3.7999 37 1 -4.1120 -8.0277 3.1139 38 1 3.4637 -4.9146 1.3078 39 1 2.0942 -6.0280 1.0737 40 1 0.8939 -4.3091 -0.2259 41 1 2.4971 -4.6061 -0.9404 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569096500.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:12 Heat of formation + Delta-G solvation = -92.920396 kcal Electronic energy + Delta-G solvation = -18250.389712 eV Core-core repulsion = 15549.253555 eV Total energy + Delta-G solvation = -2701.136156 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.70958 -37.52567 -36.58960 -34.79562 -32.67939 -32.27724 -28.94778 -27.98928 -27.50269 -24.91940 -23.58213 -22.99485 -20.73011 -20.40943 -18.88634 -17.22138 -17.04386 -16.73760 -16.17690 -15.96949 -15.65010 -15.32988 -14.80135 -14.60029 -14.22505 -14.04868 -13.69760 -13.61176 -13.17012 -13.04422 -12.91226 -12.69649 -12.62692 -12.29115 -12.17969 -11.96353 -11.81876 -11.56248 -11.49680 -11.42515 -11.34431 -10.86594 -10.84057 -10.28612 -9.12846 -8.31676 -6.35874 1.32285 1.34435 1.45381 2.31889 2.96686 3.02560 3.42618 3.71000 3.90419 4.02936 4.11387 4.14023 4.24329 4.37070 4.44740 4.55055 4.69957 4.74605 4.79544 4.83703 4.87658 4.89320 4.94350 4.96328 5.04524 5.06481 5.08403 5.15694 5.17745 5.21540 5.33792 5.41699 5.53010 5.54863 5.60180 5.95313 6.43810 6.54319 6.64221 6.75100 7.29275 8.85095 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.033230 B = 0.005429 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.415537 B = 5155.939280 C = 5577.387625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 C -0.142 4.142 4 C -0.101 4.101 5 C 0.093 3.907 6 H 0.052 0.948 7 C -0.141 4.141 8 C 0.074 3.926 9 H 0.037 0.963 10 N -0.678 5.678 11 C 0.177 3.823 12 C -0.525 4.525 13 H 0.037 0.963 14 C 0.009 3.991 15 N -0.947 5.947 16 Si 0.950 3.050 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.252 1.252 20 C -0.138 4.138 21 C 0.074 3.926 22 O -0.389 6.389 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.039 0.961 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.335 0.665 35 H 0.024 0.976 36 H -0.018 1.018 37 H 0.267 0.733 38 H 0.082 0.918 39 H 0.058 0.942 40 H 0.040 0.960 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.222 12.509 -2.668 19.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.112 4.112 3 C -0.199 4.199 4 C -0.138 4.138 5 C 0.036 3.964 6 H 0.070 0.930 7 C -0.179 4.179 8 C -0.036 4.036 9 H 0.055 0.945 10 N -0.309 5.309 11 C 0.049 3.951 12 C -0.564 4.564 13 H 0.055 0.945 14 C -0.188 4.188 15 N -0.588 5.588 16 Si 0.773 3.227 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.176 1.176 20 C -0.176 4.176 21 C -0.003 4.003 22 O -0.308 6.308 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.058 0.942 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.153 0.847 35 H 0.042 0.958 36 H 0.000 1.000 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 15.246 12.299 -3.416 19.884 hybrid contribution -0.513 -1.091 1.409 1.854 sum 14.733 11.208 -2.008 18.621 Atomic orbital electron populations 1.21897 0.95741 1.01076 1.01968 1.21024 0.95395 0.96614 0.98153 1.21800 1.01077 0.94932 1.02081 1.21679 1.01842 0.91510 0.98811 1.22123 0.96116 0.92742 0.85423 0.92990 1.22335 1.02856 0.93888 0.98855 1.21669 0.88559 0.96495 0.96886 0.94513 1.60433 1.03883 1.04377 1.62228 1.19761 0.93938 0.89249 0.92165 1.21321 0.92352 1.01818 1.40873 0.94458 1.25849 0.95751 1.01374 0.95852 1.70051 1.09951 1.29126 1.49626 0.85681 0.79581 0.78211 0.79221 1.19193 1.20635 1.17551 1.22108 1.00106 0.99647 0.95768 1.22369 0.99754 0.81065 0.97128 1.87799 1.69184 1.23472 1.50361 0.92203 0.92423 0.94186 0.92025 0.92308 0.92447 0.92178 0.89681 0.90805 0.89509 0.90407 0.84662 0.95831 0.99991 0.92367 0.89897 0.92328 0.94186 0.88247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 8.95 71.98 0.64 -2.67 16 2 C -0.09 -1.94 2.87 -10.80 -0.03 -1.98 16 3 C -0.14 -2.30 9.19 71.98 0.66 -1.64 16 4 C -0.10 -2.13 4.39 30.60 0.13 -1.99 16 5 C 0.09 2.50 2.35 30.62 0.07 2.57 16 6 H 0.05 1.63 5.95 -2.39 -0.01 1.62 16 7 C -0.14 -3.64 4.81 30.68 0.15 -3.50 16 8 C 0.07 2.36 2.84 45.03 0.13 2.49 16 9 H 0.04 1.20 7.80 -2.38 -0.02 1.18 16 10 N -0.68 -27.12 5.10 -494.94 -2.52 -29.64 16 11 C 0.18 8.46 4.31 85.56 0.37 8.83 16 12 C -0.53 -30.49 9.87 25.60 0.25 -30.24 16 13 H 0.04 2.40 8.06 -2.91 -0.02 2.38 16 14 C 0.01 0.54 5.47 84.65 0.46 1.01 16 15 N -0.95 -59.39 13.96 21.44 0.30 -59.09 16 16 Si 0.95 44.23 27.47 68.60 1.88 46.11 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 20 C -0.14 -4.13 5.75 30.69 0.18 -3.95 16 21 C 0.07 2.21 6.68 72.01 0.48 2.70 16 22 O -0.39 -11.43 9.86 -148.98 -1.47 -12.90 16 23 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.04 1.06 6.46 -2.38 -0.02 1.04 16 26 H 0.06 1.48 7.70 -2.39 -0.02 1.46 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.08 1.86 8.07 -2.39 -0.02 1.85 16 34 H 0.34 13.26 8.31 -89.70 -0.75 12.52 16 35 H 0.02 1.14 6.49 -2.38 -0.02 1.13 16 36 H -0.02 -0.82 7.48 -2.39 -0.02 -0.84 16 37 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 38 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.06 1.90 7.44 -2.39 -0.02 1.89 16 40 H 0.04 1.43 7.75 -2.39 -0.02 1.41 16 41 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -64.46 315.87 1.87 -62.59 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.18 Total: 21.30 kcal Atomic # 6 Polarization: -31.87 SS G_CDS: 3.50 Total: -28.37 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -2.22 Total: -88.73 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -1.47 Total: -12.90 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.88 Total: 46.11 kcal Total: -64.46 1.87 -62.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569096500.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.329 kcal (2) G-P(sol) polarization free energy of solvation -64.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds