Wall clock time and date at job start Sun Mar 29 2020 22:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46879 * 2 1 4 4 C 1.52997 * 109.47044 * 120.00042 * 2 1 3 5 5 C 1.53000 * 109.47152 * 175.00269 * 4 2 1 6 6 H 1.09000 * 109.48267 * 55.01931 * 5 4 2 7 7 C 1.53094 * 109.48264 * 175.05687 * 5 4 2 8 8 C 1.53173 * 109.16301 * 177.59207 * 7 5 4 9 9 H 1.09003 * 109.61701 * 62.92579 * 8 7 5 10 10 N 1.46905 * 109.54216 * 183.15143 * 8 7 5 11 11 C 1.46901 * 110.99870 * 204.55554 * 10 8 7 12 12 C 1.50697 * 109.46943 * 180.02562 * 11 10 8 13 13 H 1.08000 * 120.00162 * 359.97438 * 12 11 10 14 14 C 1.37883 * 120.00023 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99532 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00003 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47381 * 359.97438 * 16 14 12 18 18 H 1.48508 * 109.47001 * 119.99934 * 16 14 12 19 19 H 1.48497 * 109.47392 * 239.99632 * 16 14 12 20 20 C 1.53176 * 109.03589 * 303.01498 * 8 7 5 21 21 C 1.53094 * 109.16054 * 56.98241 * 20 8 7 22 22 O 1.42900 * 109.41647 * 302.38918 * 21 20 8 23 23 H 1.08994 * 109.47068 * 299.99604 * 1 2 3 24 24 H 1.08996 * 109.47124 * 60.00465 * 1 2 3 25 25 H 1.09001 * 109.47145 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46903 * 239.99931 * 2 1 3 27 27 H 1.08996 * 109.46863 * 299.99695 * 3 2 1 28 28 H 1.08997 * 109.46796 * 59.99808 * 3 2 1 29 29 H 1.09005 * 109.46749 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47484 * 55.00022 * 4 2 1 31 31 H 1.08999 * 109.46881 * 295.00175 * 4 2 1 32 32 H 1.08993 * 109.52230 * 57.68166 * 7 5 4 33 33 H 1.09001 * 109.51688 * 297.49340 * 7 5 4 34 34 H 1.00901 * 110.99869 * 80.60265 * 10 8 7 35 35 H 1.09004 * 109.47031 * 299.99620 * 11 10 8 36 36 H 1.08995 * 109.47111 * 59.99900 * 11 10 8 37 37 H 0.97001 * 119.99132 * 180.02562 * 15 14 12 38 38 H 1.08997 * 109.52490 * 176.88599 * 20 8 7 39 39 H 1.08998 * 109.52329 * 297.01392 * 20 8 7 40 40 H 1.09002 * 109.48161 * 62.37463 * 21 20 8 41 41 H 1.09004 * 109.48144 * 182.40596 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1880 6 1 3.9956 0.1611 1.0531 7 6 4.0856 -1.4410 2.4920 8 6 5.6059 -1.6032 2.3993 9 1 6.0727 -0.6238 2.2938 10 7 6.1055 -2.2573 3.6161 11 6 7.5170 -1.9250 3.8508 12 6 7.9933 -2.6128 5.1042 13 1 7.3152 -3.2343 5.6701 14 6 9.2946 -2.4479 5.5291 15 7 10.1203 -1.6907 4.8402 16 14 9.8848 -3.3000 7.0831 17 1 8.7707 -4.0873 7.6696 18 1 11.0125 -4.2078 6.7521 19 1 10.3404 -2.2818 8.0634 20 6 5.9429 -2.4655 1.1789 21 6 5.3503 -1.8159 -0.0744 22 8 3.9388 -1.6661 0.0903 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6054 -1.7198 1.2952 31 1 1.7516 -0.1583 2.1369 32 1 3.6241 -2.4160 2.6478 33 1 3.8397 -0.7831 3.3255 34 1 5.9719 -3.2564 3.5705 35 1 8.1149 -2.2602 3.0033 36 1 7.6221 -0.8462 3.9656 37 1 11.0358 -1.5751 5.1389 38 1 7.0251 -2.5403 1.0734 39 1 5.5198 -3.4616 1.3087 40 1 5.8046 -0.8367 -0.2256 41 1 5.5503 -2.4472 -0.9402 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569096501.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:14 Heat of formation + Delta-G solvation = -80.375999 kcal Electronic energy + Delta-G solvation = -17833.852397 eV Core-core repulsion = 15133.260206 eV Total energy + Delta-G solvation = -2700.592191 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.51861 -36.45876 -35.37928 -32.83353 -31.51267 -30.50995 -27.32934 -27.15727 -25.90976 -23.23959 -22.39117 -21.19428 -20.07185 -19.74934 -16.53663 -16.20891 -15.70136 -15.07455 -14.93234 -14.47608 -14.26979 -13.96521 -13.60272 -13.25530 -13.09480 -12.41404 -12.36437 -12.15331 -12.04220 -11.85650 -11.48352 -11.30912 -11.09588 -10.90570 -10.76937 -10.71895 -10.64239 -10.58170 -10.36763 -10.12773 -9.79196 -9.30821 -9.08253 -8.49994 -7.27838 -6.04818 -4.06639 3.29977 3.37244 3.42558 3.92705 4.41289 4.61853 4.86607 4.89760 5.09816 5.12673 5.25795 5.28060 5.31319 5.32981 5.49917 5.51798 5.65119 5.66466 5.70575 5.73456 5.80740 5.85148 5.92317 5.99185 6.10957 6.14805 6.18192 6.27333 6.31628 6.40318 6.53027 6.62242 7.23741 7.40925 7.43831 7.77947 8.11468 8.38577 8.60505 9.03148 9.58459 11.06297 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.047276 B = 0.004147 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.126774 B = 6750.204033 C = 6928.889619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.149 4.149 4 C -0.105 4.105 5 C 0.089 3.911 6 H 0.058 0.942 7 C -0.135 4.135 8 C 0.086 3.914 9 H 0.069 0.931 10 N -0.684 5.684 11 C 0.194 3.806 12 C -0.514 4.514 13 H 0.062 0.938 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.899 3.101 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.184 4.184 21 C 0.068 3.932 22 O -0.382 6.382 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.329 0.671 35 H -0.013 1.013 36 H 0.026 0.974 37 H 0.261 0.739 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.046 0.954 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.088 3.041 -10.563 18.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.207 4.207 4 C -0.142 4.142 5 C 0.031 3.969 6 H 0.075 0.925 7 C -0.173 4.173 8 C -0.025 4.025 9 H 0.087 0.913 10 N -0.312 5.312 11 C 0.067 3.933 12 C -0.552 4.552 13 H 0.081 0.919 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.224 4.224 21 C -0.010 4.010 22 O -0.301 6.301 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.095 0.905 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.146 0.854 35 H 0.005 0.995 36 H 0.044 0.956 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.064 0.936 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.261 3.518 -10.224 18.703 hybrid contribution 1.278 -0.834 0.323 1.560 sum -13.983 2.684 -9.901 17.342 Atomic orbital electron populations 1.21842 0.95583 1.01549 1.01411 1.21081 0.95168 0.96134 0.99088 1.21905 1.01319 0.96080 1.01368 1.21658 0.93335 1.01210 0.98034 1.22206 0.94976 0.93238 0.86492 0.92460 1.22210 0.96175 1.01943 0.96996 1.21547 0.94282 0.97866 0.88788 0.91255 1.60743 1.23331 1.13772 1.33381 1.19581 0.81343 0.96839 0.95528 1.21239 0.95778 1.29225 1.09007 0.91934 1.24998 0.96718 0.95511 0.97402 1.69976 1.05727 1.38810 1.39260 0.86427 0.78616 0.79295 0.82990 1.19641 1.21090 1.20982 1.22959 1.01788 1.00678 0.96955 1.22472 0.81307 0.99615 0.97579 1.87852 1.22463 1.69929 1.49848 0.92873 0.92989 0.92790 0.90485 0.93043 0.92826 0.92474 0.91208 0.90664 0.91475 0.90685 0.85373 0.99543 0.95567 0.92976 0.90850 0.91367 0.93551 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.19 37.16 0.34 -0.91 16 2 C -0.10 -0.96 2.87 -90.62 -0.26 -1.22 16 3 C -0.15 -1.42 8.95 37.16 0.33 -1.08 16 4 C -0.10 -1.16 4.39 -26.73 -0.12 -1.28 16 5 C 0.09 1.17 2.51 -26.68 -0.07 1.10 16 6 H 0.06 0.75 6.35 -51.93 -0.33 0.42 16 7 C -0.13 -2.04 5.03 -26.59 -0.13 -2.18 16 8 C 0.09 1.54 2.55 -67.53 -0.17 1.37 16 9 H 0.07 1.32 7.81 -51.93 -0.41 0.91 16 10 N -0.68 -14.76 6.24 -107.80 -0.67 -15.43 16 11 C 0.19 5.10 5.24 -4.98 -0.03 5.07 16 12 C -0.51 -14.68 9.32 -34.44 -0.32 -15.00 16 13 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 14 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 16 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 20 C -0.18 -2.95 5.39 -26.59 -0.14 -3.09 16 21 C 0.07 0.93 6.84 37.21 0.25 1.18 16 22 O -0.38 -5.43 9.86 -35.23 -0.35 -5.78 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.86 7.70 -51.93 -0.40 0.46 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.58 6.46 -51.93 -0.34 0.25 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.33 6.89 8.44 -39.29 -0.33 6.56 16 35 H -0.01 -0.37 7.51 -51.93 -0.39 -0.76 16 36 H 0.03 0.75 8.06 -51.93 -0.42 0.33 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.07 1.27 7.55 -51.93 -0.39 0.88 16 39 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 321.63 15.07 4.85 4.85 Total: -1.00 -29.72 321.63 -8.48 -38.21 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -7.62 Total: 2.14 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -0.41 Total: -14.55 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.06 Total: -41.63 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.35 Total: -5.78 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.72 -8.48 -38.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569096501.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.167 kcal (2) G-P(sol) polarization free energy of solvation -29.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds