Wall clock time and date at job start Sun Mar 29 2020 22:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46879 * 2 1 4 4 C 1.52997 * 109.47044 * 120.00042 * 2 1 3 5 5 C 1.53000 * 109.47152 * 175.00269 * 4 2 1 6 6 H 1.09000 * 109.48267 * 55.01931 * 5 4 2 7 7 C 1.53094 * 109.48264 * 175.05687 * 5 4 2 8 8 C 1.53173 * 109.16301 * 177.59207 * 7 5 4 9 9 H 1.09003 * 109.61701 * 62.92579 * 8 7 5 10 10 N 1.46905 * 109.54216 * 183.15143 * 8 7 5 11 11 C 1.46901 * 110.99870 * 204.55554 * 10 8 7 12 12 C 1.50697 * 109.46943 * 180.02562 * 11 10 8 13 13 H 1.08000 * 120.00162 * 359.97438 * 12 11 10 14 14 C 1.37883 * 120.00023 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99532 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00003 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47381 * 359.97438 * 16 14 12 18 18 H 1.48508 * 109.47001 * 119.99934 * 16 14 12 19 19 H 1.48497 * 109.47392 * 239.99632 * 16 14 12 20 20 C 1.53176 * 109.03589 * 303.01498 * 8 7 5 21 21 C 1.53094 * 109.16054 * 56.98241 * 20 8 7 22 22 O 1.42900 * 109.41647 * 302.38918 * 21 20 8 23 23 H 1.08994 * 109.47068 * 299.99604 * 1 2 3 24 24 H 1.08996 * 109.47124 * 60.00465 * 1 2 3 25 25 H 1.09001 * 109.47145 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46903 * 239.99931 * 2 1 3 27 27 H 1.08996 * 109.46863 * 299.99695 * 3 2 1 28 28 H 1.08997 * 109.46796 * 59.99808 * 3 2 1 29 29 H 1.09005 * 109.46749 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47484 * 55.00022 * 4 2 1 31 31 H 1.08999 * 109.46881 * 295.00175 * 4 2 1 32 32 H 1.08993 * 109.52230 * 57.68166 * 7 5 4 33 33 H 1.09001 * 109.51688 * 297.49340 * 7 5 4 34 34 H 1.00901 * 110.99869 * 80.60265 * 10 8 7 35 35 H 1.09004 * 109.47031 * 299.99620 * 11 10 8 36 36 H 1.08995 * 109.47111 * 59.99900 * 11 10 8 37 37 H 0.97001 * 119.99132 * 180.02562 * 15 14 12 38 38 H 1.08997 * 109.52490 * 176.88599 * 20 8 7 39 39 H 1.08998 * 109.52329 * 297.01392 * 20 8 7 40 40 H 1.09002 * 109.48161 * 62.37463 * 21 20 8 41 41 H 1.09004 * 109.48144 * 182.40596 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1880 6 1 3.9956 0.1611 1.0531 7 6 4.0856 -1.4410 2.4920 8 6 5.6059 -1.6032 2.3993 9 1 6.0727 -0.6238 2.2938 10 7 6.1055 -2.2573 3.6161 11 6 7.5170 -1.9250 3.8508 12 6 7.9933 -2.6128 5.1042 13 1 7.3152 -3.2343 5.6701 14 6 9.2946 -2.4479 5.5291 15 7 10.1203 -1.6907 4.8402 16 14 9.8848 -3.3000 7.0831 17 1 8.7707 -4.0873 7.6696 18 1 11.0125 -4.2078 6.7521 19 1 10.3404 -2.2818 8.0634 20 6 5.9429 -2.4655 1.1789 21 6 5.3503 -1.8159 -0.0744 22 8 3.9388 -1.6661 0.0903 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6054 -1.7198 1.2952 31 1 1.7516 -0.1583 2.1369 32 1 3.6241 -2.4160 2.6478 33 1 3.8397 -0.7831 3.3255 34 1 5.9719 -3.2564 3.5705 35 1 8.1149 -2.2602 3.0033 36 1 7.6221 -0.8462 3.9656 37 1 11.0358 -1.5751 5.1389 38 1 7.0251 -2.5403 1.0734 39 1 5.5198 -3.4616 1.3087 40 1 5.8046 -0.8367 -0.2256 41 1 5.5503 -2.4472 -0.9402 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569096501.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:14 Heat of formation + Delta-G solvation = -99.033271 kcal Electronic energy + Delta-G solvation = -17834.661437 eV Core-core repulsion = 15133.260206 eV Total energy + Delta-G solvation = -2701.401231 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.71868 -37.64339 -36.69752 -34.86533 -32.66963 -32.13645 -28.71068 -27.98444 -27.46985 -24.66206 -23.92540 -22.76499 -21.34343 -20.68085 -18.58975 -17.33868 -17.00781 -16.79094 -16.06164 -15.85925 -15.60786 -15.21299 -15.06160 -14.45954 -14.31728 -13.93847 -13.86490 -13.47613 -13.06605 -12.96899 -12.78283 -12.72002 -12.64324 -12.30203 -12.23749 -12.12941 -12.06066 -11.65270 -11.53154 -11.44922 -11.37116 -10.93018 -10.69616 -10.42023 -9.09793 -8.24956 -6.36322 1.39768 1.40530 1.54574 2.38314 2.84270 3.08289 3.38860 3.78208 3.86689 3.94853 4.09190 4.13038 4.15999 4.26477 4.33222 4.44093 4.62995 4.65418 4.75194 4.80895 4.85180 4.89311 4.91230 5.01820 5.03651 5.11405 5.14681 5.15522 5.20200 5.23817 5.34460 5.39453 5.51351 5.59469 5.60341 5.99863 6.30786 6.42621 6.69209 6.86552 7.34861 8.86735 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.047276 B = 0.004147 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.126774 B = 6750.204033 C = 6928.889619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.101 4.101 5 C 0.092 3.908 6 H 0.059 0.941 7 C -0.125 4.125 8 C 0.082 3.918 9 H 0.052 0.948 10 N -0.683 5.683 11 C 0.211 3.789 12 C -0.537 4.537 13 H 0.063 0.937 14 C 0.001 3.999 15 N -0.934 5.934 16 Si 0.974 3.026 17 H -0.263 1.263 18 H -0.277 1.277 19 H -0.278 1.278 20 C -0.177 4.177 21 C 0.072 3.928 22 O -0.385 6.385 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.334 0.666 35 H -0.036 1.036 36 H -0.004 1.004 37 H 0.265 0.735 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.050 0.950 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.340 2.649 -10.457 19.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.139 4.139 5 C 0.034 3.966 6 H 0.077 0.923 7 C -0.164 4.164 8 C -0.029 4.029 9 H 0.071 0.929 10 N -0.312 5.312 11 C 0.083 3.917 12 C -0.575 4.575 13 H 0.082 0.918 14 C -0.197 4.197 15 N -0.574 5.574 16 Si 0.798 3.202 17 H -0.187 1.187 18 H -0.202 1.202 19 H -0.203 1.203 20 C -0.217 4.217 21 C -0.006 4.006 22 O -0.304 6.304 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.152 0.848 35 H -0.019 1.019 36 H 0.014 0.986 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -16.540 3.126 -10.135 19.648 hybrid contribution 1.656 -0.681 0.251 1.808 sum -14.884 2.445 -9.883 18.033 Atomic orbital electron populations 1.21812 0.94246 1.01887 1.02148 1.21042 0.96259 0.96064 0.97853 1.21903 1.00629 0.95941 1.02164 1.21662 0.91449 1.01601 0.99164 1.22257 0.96502 0.92836 0.85022 0.92327 1.22131 0.93690 1.02207 0.98351 1.21653 0.96026 0.96960 0.88223 0.92933 1.60643 1.20267 1.14285 1.36010 1.19197 0.83669 0.94586 0.94262 1.21587 0.96388 1.29680 1.09851 0.91832 1.25968 0.96780 0.96035 1.00950 1.70099 1.06230 1.39953 1.41116 0.85264 0.78246 0.78224 0.78435 1.18673 1.20220 1.20327 1.22848 1.00818 1.00648 0.97370 1.22500 0.81071 1.00082 0.96915 1.87865 1.22462 1.70088 1.49989 0.92255 0.92166 0.92679 0.91660 0.92101 0.92234 0.93532 0.91271 0.89634 0.91353 0.90813 0.84839 1.01864 0.98592 0.92585 0.92661 0.91040 0.93121 0.87230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.19 71.98 0.66 -1.46 16 2 C -0.09 -1.70 2.87 -10.79 -0.03 -1.73 16 3 C -0.15 -2.57 8.95 71.98 0.64 -1.92 16 4 C -0.10 -2.06 4.39 30.59 0.13 -1.93 16 5 C 0.09 2.31 2.51 30.63 0.08 2.38 16 6 H 0.06 1.48 6.35 -2.39 -0.02 1.47 16 7 C -0.13 -3.71 5.03 30.68 0.15 -3.56 16 8 C 0.08 2.96 2.55 45.03 0.11 3.08 16 9 H 0.05 2.07 7.81 -2.39 -0.02 2.05 16 10 N -0.68 -30.08 6.24 -494.96 -3.09 -33.17 16 11 C 0.21 11.49 5.24 85.56 0.45 11.93 16 12 C -0.54 -31.10 9.32 25.60 0.24 -30.86 16 13 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 14 C 0.00 0.05 5.46 84.66 0.46 0.51 16 15 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 16 Si 0.97 44.61 29.54 68.60 2.03 46.64 16 17 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 18 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 20 C -0.18 -5.68 5.39 30.68 0.17 -5.51 16 21 C 0.07 1.88 6.84 72.01 0.49 2.38 16 22 O -0.38 -10.37 9.86 -148.98 -1.47 -11.84 16 23 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.06 1.35 7.70 -2.39 -0.02 1.33 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.05 0.89 6.46 -2.38 -0.02 0.87 16 30 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.09 1.57 8.14 -2.39 -0.02 1.56 16 32 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.33 14.12 8.44 -89.69 -0.76 13.36 16 35 H -0.04 -2.11 7.51 -2.39 -0.02 -2.12 16 36 H 0.00 -0.24 8.06 -2.39 -0.02 -0.26 16 37 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 38 H 0.05 1.96 7.55 -2.39 -0.02 1.94 16 39 H 0.07 2.23 8.08 -2.39 -0.02 2.21 16 40 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -63.50 321.63 1.53 -61.97 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.22 Total: 19.66 kcal Atomic # 6 Polarization: -30.26 SS G_CDS: 3.56 Total: -26.70 kcal Atomic # 7 Polarization: -86.92 SS G_CDS: -2.81 Total: -89.72 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: -1.47 Total: -11.84 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -63.50 1.53 -61.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569096501.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.067 kcal (2) G-P(sol) polarization free energy of solvation -63.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds