Wall clock time and date at job start Sun Mar 29 2020 22:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47056 * 2 1 4 4 C 1.52995 * 109.47364 * 120.00630 * 2 1 3 5 5 C 1.52992 * 109.47512 * 65.85492 * 4 2 1 6 6 H 1.08997 * 109.48370 * 304.70694 * 5 4 2 7 7 C 1.53097 * 109.49315 * 184.67895 * 5 4 2 8 8 C 1.53171 * 109.16392 * 182.40419 * 7 5 4 9 9 H 1.08996 * 109.62258 * 297.06834 * 8 7 5 10 10 N 1.46905 * 109.54323 * 176.84369 * 8 7 5 11 11 C 1.46899 * 110.99975 * 155.44346 * 10 8 7 12 12 C 1.50695 * 109.47317 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99791 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00285 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99973 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 120.00160 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46991 * 89.99927 * 16 14 12 18 18 H 1.48499 * 109.47193 * 210.00032 * 16 14 12 19 19 H 1.48502 * 109.47024 * 329.99801 * 16 14 12 20 20 C 1.53181 * 109.04002 * 56.98198 * 8 7 5 21 21 C 1.53093 * 109.16020 * 303.01983 * 20 8 7 22 22 O 1.42904 * 109.47971 * 64.72961 * 5 4 2 23 23 H 1.09007 * 109.46921 * 299.99548 * 1 2 3 24 24 H 1.08995 * 109.47814 * 59.99405 * 1 2 3 25 25 H 1.09005 * 109.47272 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46402 * 240.00423 * 2 1 3 27 27 H 1.08996 * 109.46885 * 180.40652 * 3 2 1 28 28 H 1.08999 * 109.47508 * 300.40811 * 3 2 1 29 29 H 1.09001 * 109.46845 * 60.40639 * 3 2 1 30 30 H 1.09003 * 109.47186 * 305.85623 * 4 2 1 31 31 H 1.08998 * 109.47133 * 185.85942 * 4 2 1 32 32 H 1.09007 * 109.52077 * 302.30774 * 7 5 4 33 33 H 1.08999 * 109.52226 * 62.49437 * 7 5 4 34 34 H 1.00900 * 111.00299 * 279.39887 * 10 8 7 35 35 H 1.09004 * 109.46991 * 300.00450 * 11 10 8 36 36 H 1.08999 * 109.47281 * 60.00250 * 11 10 8 37 37 H 0.97005 * 119.99923 * 179.97438 * 15 14 12 38 38 H 1.08992 * 109.52624 * 183.11195 * 20 8 7 39 39 H 1.09005 * 109.57320 * 62.95309 * 20 8 7 40 40 H 1.09004 * 109.47797 * 297.62314 * 21 20 8 41 41 H 1.09000 * 109.48112 * 177.58839 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.6539 -2.2000 1.1776 6 1 0.5762 -2.2880 1.0397 7 6 2.0606 -2.8977 2.4783 8 6 1.7254 -4.3887 2.3752 9 1 0.6483 -4.5150 2.2663 10 7 2.1810 -5.0799 3.5887 11 6 1.4118 -6.3110 3.8136 12 6 1.9059 -6.9907 5.0645 13 1 2.7106 -6.5517 5.6357 14 6 1.3307 -8.1728 5.4800 15 7 0.3505 -8.7071 4.7848 16 14 1.9428 -9.0150 7.0310 17 1 1.1735 -8.5185 8.2003 18 1 1.7572 -10.4828 6.9035 19 1 3.3841 -8.7131 7.2223 20 6 2.4365 -4.9774 1.1528 21 6 2.0152 -4.1994 -0.0966 22 8 2.3270 -2.8157 0.0777 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8898 25 1 -0.3634 -1.0277 0.0005 26 1 1.8932 -0.5138 -0.8901 27 1 3.1299 1.4425 -0.0073 28 1 1.6707 1.9585 -0.8863 29 1 1.6826 1.9542 0.8936 30 1 1.5937 -0.2717 2.1361 31 1 3.1250 -0.6314 1.3031 32 1 3.1321 -2.7754 2.6375 33 1 1.5149 -2.4585 3.3133 34 1 3.1701 -5.2746 3.5443 35 1 0.3562 -6.0642 3.9273 36 1 1.5389 -6.9795 2.9621 37 1 -0.0540 -9.5390 5.0769 38 1 2.1595 -6.0255 1.0399 39 1 3.5156 -4.8980 1.2846 40 1 0.9422 -4.3136 -0.2513 41 1 2.5508 -4.5863 -0.9636 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569096502.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:16 Heat of formation + Delta-G solvation = -99.089707 kcal Electronic energy + Delta-G solvation = -17832.844015 eV Core-core repulsion = 15131.440338 eV Total energy + Delta-G solvation = -2701.403678 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.71724 -37.64211 -36.69646 -34.86523 -32.67179 -32.13694 -28.71090 -27.98172 -27.46965 -24.66105 -23.92400 -22.76203 -21.34406 -20.68432 -18.58656 -17.33738 -17.00863 -16.79085 -16.06180 -15.85985 -15.60764 -15.20795 -15.05875 -14.45855 -14.31873 -13.94086 -13.86375 -13.47425 -13.06648 -12.96982 -12.77197 -12.71526 -12.65507 -12.30130 -12.23827 -12.12563 -12.05688 -11.65429 -11.53179 -11.45528 -11.38446 -10.93386 -10.68753 -10.42064 -9.09839 -8.24710 -6.36264 1.39980 1.41841 1.53114 2.38333 2.84208 3.08455 3.38815 3.78232 3.86705 3.94837 4.09139 4.13028 4.15989 4.26528 4.33204 4.44171 4.62898 4.65367 4.75188 4.80889 4.85177 4.89329 4.91274 5.01842 5.03642 5.11455 5.14629 5.15514 5.20148 5.23779 5.34439 5.39448 5.51359 5.59551 5.60125 5.99886 6.30726 6.42682 6.69101 6.86422 7.34922 8.86751 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.047346 B = 0.004145 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.242906 B = 6754.204845 C = 6932.378231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.101 4.101 5 C 0.092 3.908 6 H 0.059 0.941 7 C -0.125 4.125 8 C 0.082 3.918 9 H 0.052 0.948 10 N -0.683 5.683 11 C 0.211 3.789 12 C -0.538 4.538 13 H 0.064 0.936 14 C 0.001 3.999 15 N -0.934 5.934 16 Si 0.974 3.026 17 H -0.273 1.273 18 H -0.281 1.281 19 H -0.263 1.263 20 C -0.177 4.177 21 C 0.072 3.928 22 O -0.385 6.385 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.046 0.954 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.334 0.666 35 H -0.004 1.004 36 H -0.036 1.036 37 H 0.265 0.735 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.050 0.950 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.793 16.390 -10.345 19.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.201 4.201 4 C -0.139 4.139 5 C 0.034 3.966 6 H 0.076 0.924 7 C -0.164 4.164 8 C -0.029 4.029 9 H 0.071 0.929 10 N -0.312 5.312 11 C 0.083 3.917 12 C -0.576 4.576 13 H 0.082 0.918 14 C -0.197 4.197 15 N -0.574 5.574 16 Si 0.798 3.202 17 H -0.198 1.198 18 H -0.206 1.206 19 H -0.187 1.187 20 C -0.217 4.217 21 C -0.006 4.006 22 O -0.304 6.304 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.152 0.848 35 H 0.014 0.986 36 H -0.019 1.019 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.404 16.726 -10.024 19.647 hybrid contribution 0.110 -1.778 0.248 1.798 sum 2.514 14.948 -9.776 18.037 Atomic orbital electron populations 1.21902 0.95180 1.01377 1.02165 1.21043 0.95885 0.96439 0.97861 1.21812 1.00979 0.95148 1.02149 1.21662 1.01919 0.91144 0.99150 1.22249 0.95850 0.93500 0.85001 0.92357 1.22132 1.02331 0.93543 0.98369 1.21651 0.98101 0.94857 0.88247 0.92934 1.60640 1.08007 1.26206 1.36349 1.19191 0.92580 0.85654 0.94258 1.21558 1.19216 1.06891 1.09952 0.91820 1.25963 0.95043 0.97800 1.00885 1.70089 1.25840 1.20413 1.41054 0.85318 0.79056 0.77191 0.78642 1.19824 1.20607 1.18717 1.22849 1.01450 1.00007 0.97380 1.22502 1.00103 0.81057 0.96910 1.87866 1.69578 1.23053 1.49907 0.92237 0.92097 0.93540 0.91654 0.92690 0.92161 0.92257 0.89633 0.91270 0.91348 0.90809 0.84839 0.98615 1.01860 0.92577 0.92660 0.91039 0.93124 0.87228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.97 71.98 0.65 -1.91 16 2 C -0.09 -1.70 2.87 -10.80 -0.03 -1.74 16 3 C -0.14 -2.13 9.19 71.98 0.66 -1.47 16 4 C -0.10 -2.06 4.38 30.59 0.13 -1.93 16 5 C 0.09 2.31 2.52 30.62 0.08 2.39 16 6 H 0.06 1.48 6.39 -2.39 -0.02 1.46 16 7 C -0.13 -3.71 5.03 30.68 0.15 -3.56 16 8 C 0.08 2.96 2.55 45.03 0.11 3.08 16 9 H 0.05 2.07 7.81 -2.39 -0.02 2.05 16 10 N -0.68 -30.07 6.24 -494.96 -3.09 -33.16 16 11 C 0.21 11.50 5.24 85.56 0.45 11.95 16 12 C -0.54 -31.17 9.32 25.60 0.24 -30.93 16 13 H 0.06 3.59 7.81 -2.91 -0.02 3.56 16 14 C 0.00 0.08 5.46 84.65 0.46 0.54 16 15 N -0.93 -56.88 13.29 21.45 0.28 -56.60 16 16 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 20 C -0.18 -5.68 5.39 30.69 0.17 -5.52 16 21 C 0.07 1.88 6.84 72.01 0.49 2.38 16 22 O -0.38 -10.37 9.84 -148.98 -1.47 -11.83 16 23 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 24 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.05 0.89 6.50 -2.38 -0.02 0.87 16 26 H 0.06 1.36 7.67 -2.38 -0.02 1.34 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.09 1.57 8.14 -2.39 -0.02 1.56 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 33 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.33 14.12 8.44 -89.69 -0.76 13.36 16 35 H 0.00 -0.26 8.06 -2.38 -0.02 -0.27 16 36 H -0.04 -2.11 7.51 -2.39 -0.02 -2.12 16 37 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 38 H 0.05 1.96 7.55 -2.39 -0.02 1.94 16 39 H 0.07 2.23 8.09 -2.38 -0.02 2.21 16 40 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -63.46 321.67 1.53 -61.93 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.21 Total: 19.76 kcal Atomic # 6 Polarization: -30.28 SS G_CDS: 3.56 Total: -26.71 kcal Atomic # 7 Polarization: -86.96 SS G_CDS: -2.81 Total: -89.76 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: -1.47 Total: -11.83 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -63.46 1.53 -61.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569096502.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.160 kcal (2) G-P(sol) polarization free energy of solvation -63.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds