Wall clock time and date at job start Sun Mar 29 2020 22:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46920 * 2 1 4 4 O 1.42902 * 109.52363 * 64.87500 * 3 2 1 5 5 C 1.53120 * 109.52257 * 185.00089 * 3 2 1 6 6 C 1.53037 * 109.28023 * 177.56348 * 5 3 2 7 7 N 1.46854 * 109.52271 * 300.82121 * 6 5 3 8 8 C 1.46904 * 111.00034 * 185.83682 * 7 6 5 9 9 H 1.08988 * 109.46952 * 188.74384 * 8 7 6 10 10 C 1.53000 * 109.47106 * 308.74664 * 8 7 6 11 11 C 1.53003 * 109.46543 * 68.74470 * 8 7 6 12 12 C 1.50694 * 109.47303 * 63.57458 * 11 8 7 13 13 H 1.08010 * 120.00007 * 5.08033 * 12 11 8 14 14 C 1.37874 * 120.00262 * 185.07848 * 12 11 8 15 15 N 1.31519 * 120.00151 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00426 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.46802 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47033 * 120.00145 * 16 14 12 19 19 H 1.48500 * 109.47496 * 240.00392 * 16 14 12 20 20 C 1.46850 * 111.19489 * 61.74089 * 7 6 5 21 21 C 1.53040 * 109.52464 * 298.25526 * 20 7 6 22 22 H 1.08998 * 109.47182 * 299.99762 * 1 2 3 23 23 H 1.09004 * 109.47115 * 59.99618 * 1 2 3 24 24 H 1.08996 * 109.47078 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46705 * 240.00473 * 2 1 3 26 26 H 1.08991 * 109.47155 * 120.00202 * 2 1 3 27 27 H 0.96705 * 113.99787 * 300.12764 * 4 3 2 28 28 H 1.08992 * 109.50324 * 57.61970 * 5 3 2 29 29 H 1.09001 * 109.50235 * 297.49759 * 5 3 2 30 30 H 1.09001 * 109.46871 * 180.80125 * 6 5 3 31 31 H 1.09001 * 109.45534 * 60.82557 * 6 5 3 32 32 H 1.09002 * 109.47399 * 59.99789 * 10 8 7 33 33 H 1.08999 * 109.47061 * 179.97438 * 10 8 7 34 34 H 1.09003 * 109.47123 * 299.99886 * 10 8 7 35 35 H 1.09000 * 109.46703 * 183.57110 * 11 8 7 36 36 H 1.08997 * 109.47351 * 303.57001 * 11 8 7 37 37 H 0.96996 * 120.00427 * 179.97438 * 15 14 12 38 38 H 1.08996 * 109.46090 * 58.27904 * 20 7 6 39 39 H 1.09004 * 109.45893 * 178.24516 * 20 7 6 40 40 H 1.08997 * 109.50522 * 299.24566 * 21 20 7 41 41 H 1.08992 * 109.50235 * 179.12232 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 1.6599 2.0834 1.2194 5 6 3.5660 1.4457 -0.1258 6 6 4.0649 2.8912 -0.1865 7 7 3.4594 3.5715 -1.3385 8 6 4.0207 4.9183 -1.5094 9 1 3.4506 5.4560 -2.2669 10 6 3.9449 5.6746 -0.1815 11 6 5.4813 4.8096 -1.9518 12 6 5.5491 4.1425 -3.3013 13 1 4.6392 3.9017 -3.8311 14 6 6.7727 3.8394 -3.8599 15 7 7.8807 4.1321 -3.2147 16 14 6.8568 3.0118 -5.5324 17 1 5.4806 2.7903 -6.0448 18 1 7.6025 3.8809 -6.4778 19 1 7.5539 1.7069 -5.4046 20 6 1.9969 3.6224 -1.2165 21 6 1.4362 2.1987 -1.1867 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 0.7045 2.1173 1.3648 28 1 3.8572 0.9218 -1.0361 29 1 4.0034 0.9458 0.7384 30 1 5.1499 2.8970 -0.2904 31 1 3.7851 3.4106 0.7301 32 1 4.5150 5.1368 0.5760 33 1 4.3617 6.6737 -0.3082 34 1 2.9043 5.7519 0.1337 35 1 5.9162 5.8069 -2.0173 36 1 6.0379 4.2175 -1.2254 37 1 8.7415 3.9186 -3.6074 38 1 1.7271 4.1385 -0.2952 39 1 1.5799 4.1591 -2.0688 40 1 1.6940 1.6866 -2.1137 41 1 0.3522 2.2367 -1.0805 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570335345.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:31 Heat of formation + Delta-G solvation = -86.865894 kcal Electronic energy + Delta-G solvation = -18828.423576 eV Core-core repulsion = 16127.549962 eV Total energy + Delta-G solvation = -2700.873614 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.92453 -38.37093 -35.17149 -34.13010 -33.10038 -31.91697 -29.93036 -29.03479 -25.96136 -25.09971 -23.85591 -22.52799 -21.00317 -20.10768 -18.34014 -17.34539 -17.10198 -16.50549 -16.14668 -15.74481 -15.26190 -15.15336 -14.75792 -14.53180 -14.12141 -13.68646 -13.49316 -13.26258 -13.10872 -13.07073 -12.77669 -12.67725 -12.49624 -12.36719 -12.28433 -12.04562 -11.88897 -11.77805 -11.62227 -11.23034 -11.06681 -10.77045 -10.52935 -10.46688 -8.82674 -8.08330 -6.12917 1.41500 1.42101 1.55443 2.48330 3.12704 3.28082 3.44498 3.77756 3.87951 3.93911 4.17515 4.34762 4.39774 4.41132 4.46017 4.54493 4.63605 4.65104 4.69771 4.74253 4.92281 4.96684 5.00596 5.06091 5.14530 5.19219 5.20297 5.21325 5.22872 5.32487 5.44559 5.49626 5.54374 5.71555 5.91029 6.35039 6.51238 6.59587 6.95812 7.00463 7.52392 9.04206 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026200 B = 0.006977 C = 0.006151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.442720 B = 4012.074921 C = 4550.862792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.145 4.145 3 C 0.141 3.859 4 O -0.569 6.569 5 C -0.101 4.101 6 C 0.069 3.931 7 N -0.528 5.528 8 C 0.094 3.906 9 H 0.064 0.936 10 C -0.170 4.170 11 C 0.036 3.964 12 C -0.493 4.493 13 H 0.057 0.943 14 C -0.007 4.007 15 N -0.942 5.942 16 Si 0.957 3.043 17 H -0.264 1.264 18 H -0.282 1.282 19 H -0.284 1.284 20 C 0.056 3.944 21 C -0.133 4.133 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.384 0.616 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.034 0.966 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.062 0.938 35 H -0.012 1.012 36 H -0.005 1.005 37 H 0.258 0.742 38 H 0.035 0.965 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.601 -6.374 7.177 19.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.182 4.182 3 C 0.100 3.900 4 O -0.377 6.377 5 C -0.139 4.139 6 C -0.059 4.059 7 N -0.252 5.252 8 C -0.015 4.015 9 H 0.083 0.917 10 C -0.229 4.229 11 C -0.001 4.001 12 C -0.531 4.531 13 H 0.075 0.925 14 C -0.202 4.202 15 N -0.585 5.585 16 Si 0.783 3.217 17 H -0.188 1.188 18 H -0.208 1.208 19 H -0.210 1.210 20 C -0.071 4.071 21 C -0.171 4.171 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.233 0.767 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.007 0.993 36 H 0.014 0.986 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.688 -6.602 6.789 18.324 hybrid contribution 0.141 0.199 -0.215 0.325 sum -15.547 -6.403 6.574 18.054 Atomic orbital electron populations 1.21837 0.93948 1.02749 1.02535 1.22124 0.97814 0.95611 1.02685 1.21115 0.93485 0.91557 0.83827 1.86548 1.29243 1.81356 1.40569 1.21573 0.94447 0.96103 1.01800 1.21820 0.98009 0.94766 0.91349 1.61967 1.04538 1.18045 1.40619 1.21609 0.96710 0.87917 0.95222 0.91743 1.22352 1.01313 1.00661 0.98572 1.19050 0.91160 0.94391 0.95544 1.21464 0.91856 1.36608 1.03209 0.92487 1.25859 0.95656 0.97264 1.01434 1.70109 0.97824 1.50448 1.40077 0.85509 0.78206 0.77984 0.79983 1.18812 1.20830 1.20970 1.22059 0.87676 0.97565 0.99839 1.22267 1.00725 0.95172 0.98930 0.91604 0.91802 0.91763 0.91343 0.91484 0.76686 0.91068 0.91198 0.93843 0.94793 0.93524 0.92468 0.91893 0.99331 0.98631 0.93338 0.94649 0.91512 0.91353 0.88610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.22 71.98 0.66 -1.46 16 2 C -0.14 -2.79 5.23 30.59 0.16 -2.63 16 3 C 0.14 3.43 0.74 -10.71 -0.01 3.42 16 4 O -0.57 -13.49 11.84 -148.98 -1.76 -15.25 16 5 C -0.10 -3.21 5.11 30.65 0.16 -3.06 16 6 C 0.07 2.62 4.33 86.32 0.37 2.99 16 7 N -0.53 -20.63 4.26 -871.08 -3.71 -24.34 16 8 C 0.09 4.00 2.26 44.92 0.10 4.10 16 9 H 0.06 2.74 7.93 -2.39 -0.02 2.72 16 10 C -0.17 -6.15 8.40 71.98 0.60 -5.55 16 11 C 0.04 1.93 4.40 29.85 0.13 2.06 16 12 C -0.49 -28.55 8.80 25.60 0.23 -28.33 16 13 H 0.06 3.26 7.75 -2.91 -0.02 3.24 16 14 C -0.01 -0.39 5.46 84.65 0.46 0.08 16 15 N -0.94 -58.93 13.29 21.45 0.28 -58.64 16 16 Si 0.96 46.08 29.54 68.60 2.03 48.11 16 17 H -0.26 -12.18 7.11 99.48 0.71 -11.48 16 18 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 19 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 20 C 0.06 1.72 5.04 86.33 0.44 2.16 16 21 C -0.13 -3.26 4.52 30.65 0.14 -3.12 16 22 H 0.07 0.74 6.88 -2.39 -0.02 0.73 16 23 H 0.06 0.85 6.41 -2.38 -0.02 0.84 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.38 5.94 7.53 -74.05 -0.56 5.38 16 28 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.04 1.97 6.28 -2.39 -0.01 1.96 16 31 H 0.03 1.27 6.19 -2.39 -0.01 1.26 16 32 H 0.05 1.74 6.45 -2.39 -0.02 1.72 16 33 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.06 1.97 6.93 -2.39 -0.02 1.96 16 35 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 36 H 0.00 -0.27 6.39 -2.39 -0.02 -0.29 16 37 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 38 H 0.04 1.05 6.60 -2.39 -0.02 1.03 16 39 H 0.07 2.00 7.98 -2.38 -0.02 1.98 16 40 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.10 1.73 6.51 -2.39 -0.02 1.71 16 Total: -1.00 -67.21 307.02 0.72 -66.49 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.44 Total: 12.97 kcal Atomic # 6 Polarization: -32.79 SS G_CDS: 3.45 Total: -29.35 kcal Atomic # 7 Polarization: -79.55 SS G_CDS: -3.43 Total: -82.98 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -1.76 Total: -15.25 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -67.21 0.72 -66.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570335345.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.373 kcal (2) G-P(sol) polarization free energy of solvation -67.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds