Wall clock time and date at job start Sun Mar 29 2020 23:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47212 * 2 1 4 4 H 1.08999 * 109.47191 * 175.06489 * 3 2 1 5 5 C 1.50697 * 109.47505 * 55.06417 * 3 2 1 6 6 H 1.08002 * 120.00530 * 245.69764 * 5 3 2 7 7 C 1.37887 * 119.99852 * 65.69677 * 5 3 2 8 8 N 1.31513 * 119.99809 * 5.49989 * 7 5 3 9 9 Si 1.86795 * 119.99809 * 185.50069 * 7 5 3 10 10 H 1.48502 * 109.47021 * 269.99619 * 9 7 5 11 11 H 1.48500 * 109.47012 * 150.00296 * 9 7 5 12 12 H 1.48496 * 109.47411 * 29.99927 * 9 7 5 13 13 N 1.46900 * 109.47349 * 295.06629 * 3 2 1 14 14 C 1.46907 * 110.99910 * 279.83083 * 13 3 2 15 15 C 1.52999 * 109.47158 * 185.01673 * 14 13 3 16 16 H 1.08998 * 110.27648 * 305.70094 * 15 14 13 17 17 C 1.54944 * 110.30916 * 183.60947 * 15 14 13 18 18 C 1.55304 * 100.94291 * 204.64191 * 17 15 14 19 19 C 1.54381 * 102.25241 * 34.13180 * 18 17 15 20 20 C 1.53004 * 109.82937 * 98.15472 * 19 18 17 21 21 C 1.52998 * 109.83405 * 219.03624 * 19 18 17 22 22 O 1.43381 * 107.61222 * 338.56441 * 19 18 17 23 23 H 1.08998 * 109.47005 * 305.01412 * 1 2 3 24 24 H 1.08998 * 109.46874 * 65.00774 * 1 2 3 25 25 H 1.08998 * 109.47358 * 185.01032 * 1 2 3 26 26 H 1.08992 * 109.47016 * 239.99389 * 2 1 3 27 27 H 1.09002 * 109.46723 * 119.99682 * 2 1 3 28 28 H 0.97001 * 119.99981 * 355.14392 * 8 7 5 29 29 H 1.00900 * 111.00038 * 43.77713 * 13 3 2 30 30 H 1.08993 * 109.46884 * 305.01970 * 14 13 3 31 31 H 1.09007 * 109.46650 * 65.02048 * 14 13 3 32 32 H 1.09000 * 111.12520 * 322.56128 * 17 15 14 33 33 H 1.08999 * 111.12259 * 86.72169 * 17 15 14 34 34 H 1.09002 * 110.84690 * 152.32046 * 18 17 15 35 35 H 1.09001 * 110.85072 * 275.94384 * 18 17 15 36 36 H 1.09004 * 109.46861 * 59.99978 * 20 19 18 37 37 H 1.09003 * 109.47001 * 180.02562 * 20 19 18 38 38 H 1.08996 * 109.47568 * 300.00192 * 20 19 18 39 39 H 1.09004 * 109.46663 * 60.00052 * 21 19 18 40 40 H 1.09003 * 109.47379 * 179.97438 * 21 19 18 41 41 H 1.08994 * 109.47304 * 300.00525 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1265 1.4437 0.0884 5 6 1.4405 2.1873 1.1647 6 1 0.7570 3.0049 0.9888 7 6 1.7644 1.8251 2.4551 8 7 2.6774 0.9032 2.6697 9 14 0.9065 2.6439 3.8983 10 1 1.6704 3.8491 4.3094 11 1 0.8340 1.6921 5.0359 12 1 -0.4669 3.0413 3.4971 13 7 1.6501 2.0997 -1.2545 14 6 2.5597 1.7301 -2.3474 15 6 2.1993 2.5274 -3.6025 16 1 1.1457 2.3918 -3.8466 17 6 3.0882 2.0872 -4.7928 18 6 3.0444 3.3609 -5.6803 19 6 2.9820 4.4903 -4.6296 20 6 4.3802 5.0705 -4.4077 21 6 2.0331 5.5915 -5.1069 22 8 2.4910 3.9206 -3.4089 23 1 -0.3633 0.5896 0.8417 24 1 -0.3633 0.4342 -0.9314 25 1 -0.3634 -1.0237 0.0897 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.0722 0.4282 1.9218 29 1 0.6932 1.8858 -1.4926 30 1 3.5861 1.9538 -2.0570 31 1 2.4646 0.6641 -2.5543 32 1 4.1051 1.8715 -4.4651 33 1 2.6548 1.2320 -5.3114 34 1 3.9474 3.4434 -6.2853 35 1 2.1536 3.3658 -6.3084 36 1 4.7599 5.4730 -5.3469 37 1 4.3295 5.8667 -3.6649 38 1 5.0475 4.2851 -4.0529 39 1 1.0355 5.1754 -5.2481 40 1 1.9931 6.3852 -4.3609 41 1 2.3941 5.9980 -6.0516 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570407728.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:55 Heat of formation + Delta-G solvation = -66.135257 kcal Electronic energy + Delta-G solvation = -18300.965918 eV Core-core repulsion = 15600.991252 eV Total energy + Delta-G solvation = -2699.974666 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.73784 -36.72889 -33.72295 -32.37581 -31.67312 -30.38267 -27.31755 -27.30183 -25.09689 -23.55083 -22.58941 -21.04081 -19.82697 -19.44943 -16.80576 -16.44952 -15.38162 -15.00804 -14.29310 -13.88008 -13.69005 -13.59206 -13.26637 -13.25639 -12.89997 -12.60506 -12.13778 -12.10534 -11.95113 -11.67807 -11.49867 -11.42406 -11.11337 -10.69759 -10.69297 -10.61205 -10.53863 -10.10929 -10.04203 -10.00334 -9.79818 -9.24656 -8.54526 -8.15176 -7.17934 -6.22230 -3.90814 3.50856 3.53745 3.69629 3.90511 4.52314 4.59583 4.75384 4.81580 5.02007 5.17917 5.22741 5.47050 5.55008 5.58281 5.60092 5.64010 5.68353 5.74885 5.83486 5.90135 5.94755 6.00853 6.11483 6.17579 6.18387 6.24659 6.33856 6.35261 6.48512 6.71047 7.03953 7.11105 7.28886 7.35574 7.46885 8.01874 8.36548 8.56795 8.74453 9.01956 9.77401 11.14082 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.030230 B = 0.005626 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.007082 B = 4975.555984 C = 5400.539469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.153 4.153 3 C 0.204 3.796 4 H 0.025 0.975 5 C -0.566 4.566 6 H 0.055 0.945 7 C 0.016 3.984 8 N -0.920 5.920 9 Si 1.070 2.930 10 H -0.289 1.289 11 H -0.287 1.287 12 H -0.289 1.289 13 N -0.668 5.668 14 C 0.060 3.940 15 C 0.089 3.911 16 H 0.062 0.938 17 C -0.152 4.152 18 C -0.145 4.145 19 C 0.094 3.906 20 C -0.151 4.151 21 C -0.152 4.152 22 O -0.344 6.344 23 H 0.073 0.927 24 H 0.032 0.968 25 H 0.027 0.973 26 H 0.019 0.981 27 H 0.066 0.934 28 H 0.268 0.732 29 H 0.326 0.674 30 H 0.069 0.931 31 H 0.028 0.972 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.109 3.189 -16.533 16.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.193 4.193 3 C 0.095 3.905 4 H 0.043 0.957 5 C -0.605 4.605 6 H 0.073 0.927 7 C -0.187 4.187 8 N -0.558 5.558 9 Si 0.899 3.101 10 H -0.216 1.216 11 H -0.213 1.213 12 H -0.215 1.215 13 N -0.298 5.298 14 C -0.070 4.070 15 C 0.031 3.969 16 H 0.080 0.920 17 C -0.191 4.191 18 C -0.182 4.182 19 C 0.054 3.946 20 C -0.208 4.208 21 C -0.209 4.209 22 O -0.263 6.263 23 H 0.092 0.908 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.038 0.962 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.144 0.856 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.383 3.979 -14.526 15.066 hybrid contribution -0.167 -1.221 -2.111 2.444 sum 0.216 2.757 -16.636 16.864 Atomic orbital electron populations 1.21592 0.96796 0.99021 1.01429 1.22276 0.96171 1.01596 0.99297 1.19342 0.95556 0.88197 0.87379 0.95690 1.21850 1.29790 1.17834 0.91033 0.92665 1.25710 0.95880 0.97136 1.00010 1.70776 1.24802 1.24705 1.35531 0.83533 0.75562 0.75663 0.75366 1.21614 1.21300 1.21514 1.60666 1.04484 1.62265 1.02348 1.22056 0.98928 0.94788 0.91236 1.22964 0.97511 0.82199 0.94229 0.92009 1.23288 1.01372 0.97907 0.96484 1.23177 1.02644 0.94478 0.97947 1.22092 0.93868 0.93431 0.85209 1.22052 0.95566 1.01571 1.01605 1.22079 0.99312 0.98744 1.00790 1.88705 1.84695 1.22077 1.30872 0.90829 0.94915 0.95419 0.96195 0.91538 0.92002 0.85642 0.91231 0.95457 0.90383 0.90373 0.90394 0.90773 0.92156 0.91836 0.92249 0.92388 0.91844 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 9.38 37.16 0.35 -2.42 16 2 C -0.15 -3.55 5.45 -26.73 -0.15 -3.70 16 3 C 0.20 5.16 1.95 -68.87 -0.13 5.03 16 4 H 0.03 0.71 7.32 -51.93 -0.38 0.33 16 5 C -0.57 -15.97 7.19 -34.44 -0.25 -16.22 16 6 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 7 C 0.02 0.45 5.29 -17.82 -0.09 0.35 16 8 N -0.92 -27.71 13.21 55.43 0.73 -26.98 16 9 Si 1.07 25.75 29.91 -169.99 -5.08 20.67 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.67 -14.85 6.18 -107.95 -0.67 -15.52 16 14 C 0.06 1.12 5.19 -3.82 -0.02 1.10 16 15 C 0.09 1.40 3.66 -25.71 -0.09 1.30 16 16 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 17 C -0.15 -1.83 6.57 -24.48 -0.16 -1.99 16 18 C -0.14 -1.55 6.09 -24.79 -0.15 -1.70 16 19 C 0.09 1.22 1.27 -89.89 -0.11 1.11 16 20 C -0.15 -1.81 8.73 37.16 0.32 -1.48 16 21 C -0.15 -1.74 8.74 37.16 0.32 -1.42 16 22 O -0.34 -6.01 10.37 -35.23 -0.37 -6.38 16 23 H 0.07 1.71 6.88 -51.93 -0.36 1.36 16 24 H 0.03 0.62 6.68 -51.93 -0.35 0.27 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.02 0.41 7.13 -51.93 -0.37 0.04 16 27 H 0.07 1.69 6.17 -51.93 -0.32 1.37 16 28 H 0.27 8.02 5.62 -40.82 -0.23 7.79 16 29 H 0.33 6.91 6.79 -39.29 -0.27 6.64 16 30 H 0.07 1.38 7.95 -51.93 -0.41 0.97 16 31 H 0.03 0.48 7.20 -51.93 -0.37 0.11 16 32 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.71 7.82 -51.93 -0.41 0.30 16 35 H 0.07 0.72 7.85 -51.93 -0.41 0.31 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 317.04 15.07 4.78 4.78 Total: -1.00 -30.74 317.04 -8.07 -38.81 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -7.30 Total: 4.65 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: -0.16 Total: -20.03 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 0.06 Total: -42.50 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.37 Total: -6.38 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -5.08 Total: 20.67 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.74 -8.07 -38.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570407728.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.326 kcal (2) G-P(sol) polarization free energy of solvation -30.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds