Wall clock time and date at job start Sun Mar 29 2020 23:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47212 * 2 1 4 4 H 1.08999 * 109.47191 * 175.06489 * 3 2 1 5 5 C 1.50697 * 109.47505 * 55.06417 * 3 2 1 6 6 H 1.08002 * 120.00530 * 245.69764 * 5 3 2 7 7 C 1.37887 * 119.99852 * 65.69677 * 5 3 2 8 8 N 1.31513 * 119.99809 * 5.49989 * 7 5 3 9 9 Si 1.86795 * 119.99809 * 185.50069 * 7 5 3 10 10 H 1.48502 * 109.47021 * 269.99619 * 9 7 5 11 11 H 1.48500 * 109.47012 * 150.00296 * 9 7 5 12 12 H 1.48496 * 109.47411 * 29.99927 * 9 7 5 13 13 N 1.46900 * 109.47349 * 295.06629 * 3 2 1 14 14 C 1.46907 * 110.99910 * 279.83083 * 13 3 2 15 15 C 1.52999 * 109.47158 * 185.01673 * 14 13 3 16 16 H 1.08998 * 110.27648 * 305.70094 * 15 14 13 17 17 C 1.54944 * 110.30916 * 183.60947 * 15 14 13 18 18 C 1.55304 * 100.94291 * 204.64191 * 17 15 14 19 19 C 1.54381 * 102.25241 * 34.13180 * 18 17 15 20 20 C 1.53004 * 109.82937 * 98.15472 * 19 18 17 21 21 C 1.52998 * 109.83405 * 219.03624 * 19 18 17 22 22 O 1.43381 * 107.61222 * 338.56441 * 19 18 17 23 23 H 1.08998 * 109.47005 * 305.01412 * 1 2 3 24 24 H 1.08998 * 109.46874 * 65.00774 * 1 2 3 25 25 H 1.08998 * 109.47358 * 185.01032 * 1 2 3 26 26 H 1.08992 * 109.47016 * 239.99389 * 2 1 3 27 27 H 1.09002 * 109.46723 * 119.99682 * 2 1 3 28 28 H 0.97001 * 119.99981 * 355.14392 * 8 7 5 29 29 H 1.00900 * 111.00038 * 43.77713 * 13 3 2 30 30 H 1.08993 * 109.46884 * 305.01970 * 14 13 3 31 31 H 1.09007 * 109.46650 * 65.02048 * 14 13 3 32 32 H 1.09000 * 111.12520 * 322.56128 * 17 15 14 33 33 H 1.08999 * 111.12259 * 86.72169 * 17 15 14 34 34 H 1.09002 * 110.84690 * 152.32046 * 18 17 15 35 35 H 1.09001 * 110.85072 * 275.94384 * 18 17 15 36 36 H 1.09004 * 109.46861 * 59.99978 * 20 19 18 37 37 H 1.09003 * 109.47001 * 180.02562 * 20 19 18 38 38 H 1.08996 * 109.47568 * 300.00192 * 20 19 18 39 39 H 1.09004 * 109.46663 * 60.00052 * 21 19 18 40 40 H 1.09003 * 109.47379 * 179.97438 * 21 19 18 41 41 H 1.08994 * 109.47304 * 300.00525 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1265 1.4437 0.0884 5 6 1.4405 2.1873 1.1647 6 1 0.7570 3.0049 0.9888 7 6 1.7644 1.8251 2.4551 8 7 2.6774 0.9032 2.6697 9 14 0.9065 2.6439 3.8983 10 1 1.6704 3.8491 4.3094 11 1 0.8340 1.6921 5.0359 12 1 -0.4669 3.0413 3.4971 13 7 1.6501 2.0997 -1.2545 14 6 2.5597 1.7301 -2.3474 15 6 2.1993 2.5274 -3.6025 16 1 1.1457 2.3918 -3.8466 17 6 3.0882 2.0872 -4.7928 18 6 3.0444 3.3609 -5.6803 19 6 2.9820 4.4903 -4.6296 20 6 4.3802 5.0705 -4.4077 21 6 2.0331 5.5915 -5.1069 22 8 2.4910 3.9206 -3.4089 23 1 -0.3633 0.5896 0.8417 24 1 -0.3633 0.4342 -0.9314 25 1 -0.3634 -1.0237 0.0897 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.0722 0.4282 1.9218 29 1 0.6932 1.8858 -1.4926 30 1 3.5861 1.9538 -2.0570 31 1 2.4646 0.6641 -2.5543 32 1 4.1051 1.8715 -4.4651 33 1 2.6548 1.2320 -5.3114 34 1 3.9474 3.4434 -6.2853 35 1 2.1536 3.3658 -6.3084 36 1 4.7599 5.4730 -5.3469 37 1 4.3295 5.8667 -3.6649 38 1 5.0475 4.2851 -4.0529 39 1 1.0355 5.1754 -5.2481 40 1 1.9931 6.3852 -4.3609 41 1 2.3941 5.9980 -6.0516 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570407728.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:55 Heat of formation + Delta-G solvation = -86.134846 kcal Electronic energy + Delta-G solvation = -18301.833165 eV Core-core repulsion = 15600.991252 eV Total energy + Delta-G solvation = -2700.841913 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.83974 -38.57634 -35.23388 -33.83863 -33.08312 -31.98521 -28.86824 -28.22913 -26.88069 -25.49811 -23.84748 -22.24603 -21.41349 -20.84793 -18.83755 -17.60845 -16.81266 -16.36021 -15.83381 -15.55070 -15.28853 -15.13688 -14.55817 -14.50138 -14.23310 -14.01434 -13.78373 -13.27954 -13.16635 -13.06983 -12.83510 -12.62023 -12.54804 -12.46376 -12.20109 -11.95922 -11.90634 -11.72868 -11.63475 -11.61873 -11.43695 -10.65575 -10.42017 -10.32010 -8.96928 -8.50916 -6.20446 1.54354 1.62550 1.80541 2.59952 2.83825 3.25784 3.45666 3.58871 3.89563 3.93402 4.06060 4.23236 4.27974 4.30775 4.34561 4.46624 4.49276 4.56468 4.61398 4.74125 4.76148 4.84619 4.87364 4.91940 4.99283 5.01565 5.07563 5.13985 5.21109 5.22623 5.31235 5.38873 5.42047 5.55613 5.97772 6.22176 6.36840 6.55625 6.80360 6.82177 7.55566 8.85581 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.030230 B = 0.005626 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.007082 B = 4975.555984 C = 5400.539469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.144 4.144 3 C 0.208 3.792 4 H -0.013 1.013 5 C -0.574 4.574 6 H 0.041 0.959 7 C -0.030 4.030 8 N -0.943 5.943 9 Si 1.112 2.888 10 H -0.281 1.281 11 H -0.283 1.283 12 H -0.271 1.271 13 N -0.679 5.679 14 C 0.063 3.937 15 C 0.089 3.911 16 H 0.067 0.933 17 C -0.146 4.146 18 C -0.134 4.134 19 C 0.079 3.921 20 C -0.149 4.149 21 C -0.148 4.148 22 O -0.386 6.386 23 H 0.047 0.953 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.041 0.959 27 H 0.038 0.962 28 H 0.258 0.742 29 H 0.332 0.668 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.045 0.955 38 H 0.047 0.953 39 H 0.055 0.945 40 H 0.047 0.953 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.722 3.259 -18.681 18.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.184 4.184 3 C 0.099 3.901 4 H 0.005 0.995 5 C -0.613 4.613 6 H 0.060 0.940 7 C -0.228 4.228 8 N -0.582 5.582 9 Si 0.936 3.064 10 H -0.208 1.208 11 H -0.209 1.209 12 H -0.196 1.196 13 N -0.310 5.310 14 C -0.067 4.067 15 C 0.031 3.969 16 H 0.085 0.915 17 C -0.184 4.184 18 C -0.171 4.171 19 C 0.040 3.960 20 C -0.207 4.207 21 C -0.206 4.206 22 O -0.306 6.306 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.151 0.849 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.448 4.054 -16.709 17.199 hybrid contribution 0.135 -1.207 -1.502 1.932 sum -0.313 2.846 -18.211 18.434 Atomic orbital electron populations 1.21497 0.94872 1.00312 1.01407 1.22107 0.97768 0.99650 0.98900 1.19111 0.93021 0.89672 0.88329 0.99541 1.22093 1.29269 1.17515 0.92380 0.94016 1.27016 0.95771 0.97084 1.02914 1.70883 1.26199 1.25956 1.35141 0.82983 0.75569 0.75127 0.72766 1.20759 1.20904 1.19640 1.60532 1.05485 1.62497 1.02442 1.22087 0.96852 0.96293 0.91448 1.22950 0.98585 0.81605 0.93785 0.91494 1.23266 1.00428 0.99474 0.95202 1.23171 1.04573 0.92172 0.97232 1.22438 0.94304 0.94626 0.84654 1.22069 0.95214 1.00711 1.02684 1.22067 0.99072 0.97815 1.01625 1.88661 1.85136 1.22959 1.33842 0.93414 0.92791 0.92958 0.94059 0.94339 0.93128 0.84880 0.93567 0.94020 0.90787 0.88016 0.88113 0.89163 0.89047 0.93563 0.93335 0.92556 0.93417 0.89222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 9.38 71.98 0.68 -4.39 16 2 C -0.14 -6.70 5.45 30.59 0.17 -6.53 16 3 C 0.21 10.82 1.95 44.17 0.09 10.90 16 4 H -0.01 -0.79 7.32 -2.39 -0.02 -0.80 16 5 C -0.57 -33.11 7.19 25.60 0.18 -32.92 16 6 H 0.04 2.47 7.82 -2.91 -0.02 2.45 16 7 C -0.03 -1.77 5.29 84.66 0.45 -1.32 16 8 N -0.94 -58.22 13.21 21.45 0.28 -57.93 16 9 Si 1.11 52.13 29.91 68.60 2.05 54.18 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 13 N -0.68 -30.51 6.18 -495.45 -3.06 -33.57 16 14 C 0.06 2.34 5.19 86.30 0.45 2.79 16 15 C 0.09 2.68 3.66 31.26 0.11 2.79 16 16 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 17 C -0.15 -3.13 6.57 32.05 0.21 -2.92 16 18 C -0.13 -2.42 6.09 31.85 0.19 -2.22 16 19 C 0.08 1.92 1.27 -10.32 -0.01 1.91 16 20 C -0.15 -3.41 8.73 71.98 0.63 -2.78 16 21 C -0.15 -3.12 8.74 71.98 0.63 -2.50 16 22 O -0.39 -13.39 10.37 -148.98 -1.54 -14.93 16 23 H 0.05 2.20 6.88 -2.39 -0.02 2.18 16 24 H 0.05 1.95 6.68 -2.39 -0.02 1.94 16 25 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.04 1.70 7.13 -2.39 -0.02 1.69 16 27 H 0.04 1.99 6.17 -2.39 -0.01 1.98 16 28 H 0.26 16.04 5.62 -92.71 -0.52 15.52 16 29 H 0.33 13.93 6.79 -89.69 -0.61 13.32 16 30 H 0.05 1.91 7.95 -2.39 -0.02 1.89 16 31 H 0.04 1.42 7.20 -2.38 -0.02 1.40 16 32 H 0.07 1.65 8.06 -2.39 -0.02 1.63 16 33 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.10 1.39 7.82 -2.39 -0.02 1.37 16 35 H 0.09 1.37 7.85 -2.39 -0.02 1.35 16 36 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -68.33 317.04 2.12 -66.21 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.62 Total: 23.25 kcal Atomic # 6 Polarization: -40.96 SS G_CDS: 3.77 Total: -37.19 kcal Atomic # 7 Polarization: -88.73 SS G_CDS: -2.78 Total: -91.51 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -1.54 Total: -14.93 kcal Atomic # 14 Polarization: 52.13 SS G_CDS: 2.05 Total: 54.18 kcal Total: -68.33 2.12 -66.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570407728.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.925 kcal (2) G-P(sol) polarization free energy of solvation -68.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds