Wall clock time and date at job start Sun Mar 29 2020 23:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46764 * 2 1 4 4 H 1.08994 * 109.47174 * 54.78869 * 3 2 1 5 5 C 1.50696 * 109.46954 * 174.78973 * 3 2 1 6 6 H 1.08003 * 119.99953 * 114.63197 * 5 3 2 7 7 C 1.37875 * 120.00353 * 294.63258 * 5 3 2 8 8 N 1.31513 * 120.00680 * 171.19141 * 7 5 3 9 9 Si 1.86805 * 119.99810 * 351.18942 * 7 5 3 10 10 H 1.48501 * 109.47154 * 266.25266 * 9 7 5 11 11 H 1.48498 * 109.47361 * 146.25139 * 9 7 5 12 12 H 1.48506 * 109.47071 * 26.24930 * 9 7 5 13 13 N 1.46898 * 109.46952 * 294.78994 * 3 2 1 14 14 C 1.46903 * 111.00007 * 130.85525 * 13 3 2 15 15 C 1.53002 * 109.47127 * 185.12041 * 14 13 3 16 16 H 1.09005 * 110.54930 * 305.69696 * 15 14 13 17 17 C 1.54996 * 110.61806 * 182.82543 * 15 14 13 18 18 C 1.54987 * 102.00817 * 204.59468 * 17 15 14 19 19 C 1.54099 * 104.25643 * 20.66162 * 18 17 15 20 20 C 1.52988 * 109.88026 * 242.74330 * 19 18 17 21 21 C 1.53000 * 110.00034 * 121.65916 * 19 18 17 22 22 O 1.43742 * 107.29010 * 2.16748 * 19 18 17 23 23 H 1.09004 * 109.47268 * 294.88579 * 1 2 3 24 24 H 1.08996 * 109.47326 * 54.89214 * 1 2 3 25 25 H 1.09003 * 109.46767 * 174.89036 * 1 2 3 26 26 H 1.08995 * 109.47325 * 240.00121 * 2 1 3 27 27 H 1.09002 * 109.47080 * 119.99557 * 2 1 3 28 28 H 0.97001 * 120.00538 * 179.97438 * 8 7 5 29 29 H 1.00897 * 110.99907 * 254.80859 * 13 3 2 30 30 H 1.08998 * 109.46932 * 305.11996 * 14 13 3 31 31 H 1.09002 * 109.47238 * 65.11724 * 14 13 3 32 32 H 1.09003 * 110.90223 * 322.66484 * 17 15 14 33 33 H 1.08996 * 110.91200 * 86.27389 * 17 15 14 34 34 H 1.08999 * 110.33786 * 262.02035 * 18 17 15 35 35 H 1.09003 * 110.68263 * 139.47866 * 18 17 15 36 36 H 1.09001 * 109.47482 * 179.28334 * 20 19 18 37 37 H 1.09001 * 109.47136 * 299.28378 * 20 19 18 38 38 H 1.09005 * 109.47735 * 59.28134 * 20 19 18 39 39 H 1.09000 * 109.47293 * 300.63811 * 21 19 18 40 40 H 1.08997 * 109.47344 * 60.64338 * 21 19 18 41 41 H 1.09002 * 109.46699 * 180.64175 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6024 1.9826 0.8396 5 6 3.5414 1.4446 0.1290 6 1 4.1527 1.8092 -0.6833 7 6 4.1347 0.9809 1.2840 8 7 5.4389 0.8194 1.3342 9 14 3.0861 0.5822 2.7776 10 1 3.0286 1.7660 3.6724 11 1 3.6830 -0.5634 3.5100 12 1 1.7128 0.2272 2.3378 13 7 1.6556 2.0977 -1.2574 14 6 1.0301 3.4021 -1.0016 15 6 0.5296 3.9951 -2.3202 16 1 1.3367 4.0368 -3.0517 17 6 -0.0726 5.4047 -2.0910 18 6 -1.0452 5.5388 -3.2903 19 6 -1.3008 4.0859 -3.7358 20 6 -0.7903 3.8821 -5.1635 21 6 -2.7971 3.7737 -3.6690 22 8 -0.5819 3.2294 -2.8327 23 1 -0.3634 0.4325 0.9323 24 1 -0.3634 0.5910 -0.8407 25 1 -0.3633 -1.0236 -0.0915 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 5.8564 0.4935 2.1469 29 1 2.4492 2.1919 -1.8733 30 1 0.1902 3.2746 -0.3186 31 1 1.7623 4.0750 -0.5553 32 1 -0.6141 5.4474 -1.1460 33 1 0.7028 6.1698 -2.1284 34 1 -0.5789 6.1080 -4.0944 35 1 -1.9766 6.0121 -2.9795 36 1 -0.9628 2.8496 -5.4672 37 1 -1.3216 4.5529 -5.8386 38 1 0.2774 4.0986 -5.2021 39 1 -3.1522 3.9132 -2.6479 40 1 -3.3384 4.4439 -4.3367 41 1 -2.9668 2.7413 -3.9747 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570407729.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:57 Heat of formation + Delta-G solvation = -59.411406 kcal Electronic energy + Delta-G solvation = -18334.634250 eV Core-core repulsion = 15634.951152 eV Total energy + Delta-G solvation = -2699.683098 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.73284 -36.38555 -33.55560 -32.27897 -31.86938 -30.96337 -27.84303 -27.38578 -25.81286 -22.87750 -22.11934 -20.88222 -19.93358 -19.50661 -17.00278 -16.37760 -15.33830 -15.09959 -14.75718 -14.16674 -13.72220 -13.44913 -13.28654 -13.19744 -12.83995 -12.44125 -12.21258 -12.16359 -11.88267 -11.71304 -11.57698 -11.38754 -11.23116 -11.01979 -10.72958 -10.66488 -10.56708 -10.44779 -10.15129 -9.70951 -9.35049 -9.19904 -9.05547 -8.47763 -7.27099 -6.10740 -4.09526 3.28422 3.38568 3.43127 3.96783 4.41973 4.60325 4.72266 4.84631 4.98536 5.16038 5.22691 5.26455 5.53649 5.56118 5.58208 5.62140 5.74259 5.79798 5.83079 5.89545 5.98710 6.06737 6.16046 6.20591 6.26997 6.28416 6.33412 6.44974 6.46591 6.76620 6.92685 7.19852 7.23215 7.32704 7.51232 7.63927 8.07404 8.42086 8.60949 8.95149 9.54359 11.02184 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.035433 B = 0.005748 C = 0.005467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.024945 B = 4870.052096 C = 5120.095617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C 0.188 3.812 4 H 0.018 0.982 5 C -0.541 4.541 6 H 0.072 0.928 7 C 0.075 3.925 8 N -0.897 5.897 9 Si 0.861 3.139 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.240 1.240 13 N -0.674 5.674 14 C 0.070 3.930 15 C 0.085 3.915 16 H 0.064 0.936 17 C -0.151 4.151 18 C -0.145 4.145 19 C 0.091 3.909 20 C -0.161 4.161 21 C -0.141 4.141 22 O -0.343 6.343 23 H 0.032 0.968 24 H 0.064 0.936 25 H 0.030 0.970 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.263 0.737 29 H 0.336 0.664 30 H 0.068 0.932 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.981 8.411 -8.604 18.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.149 4.149 3 C 0.079 3.921 4 H 0.036 0.964 5 C -0.580 4.580 6 H 0.090 0.910 7 C -0.127 4.127 8 N -0.535 5.535 9 Si 0.688 3.312 10 H -0.210 1.210 11 H -0.214 1.214 12 H -0.164 1.164 13 N -0.304 5.304 14 C -0.060 4.060 15 C 0.026 3.974 16 H 0.082 0.918 17 C -0.190 4.190 18 C -0.183 4.183 19 C 0.051 3.949 20 C -0.219 4.219 21 C -0.198 4.198 22 O -0.262 6.262 23 H 0.051 0.949 24 H 0.083 0.917 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.153 0.847 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.487 7.784 -8.482 18.505 hybrid contribution 0.592 0.539 1.107 1.366 sum -13.895 8.324 -7.375 17.797 Atomic orbital electron populations 1.21755 0.98154 0.99393 1.00882 1.21909 0.93292 0.99143 1.00551 1.19456 0.94428 0.91096 0.87104 0.96446 1.21625 0.90117 1.43440 1.02771 0.90954 1.24957 0.94723 0.94313 0.98744 1.69948 1.09713 1.45794 1.28009 0.87309 0.82824 0.78131 0.82954 1.20966 1.21351 1.16353 1.60594 1.34275 1.19037 1.16525 1.21920 0.98260 0.91887 0.93955 1.23155 0.89402 0.88763 0.96031 0.91787 1.23181 0.98948 0.98027 0.98821 1.23038 1.00130 0.96788 0.98343 1.22066 0.92945 0.89464 0.90419 1.22240 1.01434 1.02365 0.95815 1.21864 0.93549 1.02176 1.02194 1.89072 1.40578 1.36075 1.60499 0.94869 0.91666 0.95091 0.92794 0.93020 0.92722 0.84694 0.91341 0.94273 0.90557 0.90491 0.90992 0.90806 0.91882 0.92252 0.92373 0.92085 0.91911 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.86 37.16 0.37 -2.51 16 2 C -0.11 -2.52 4.80 -26.73 -0.13 -2.65 16 3 C 0.19 4.48 1.72 -68.86 -0.12 4.36 16 4 H 0.02 0.43 6.35 -51.93 -0.33 0.10 16 5 C -0.54 -15.04 9.08 -34.44 -0.31 -15.35 16 6 H 0.07 2.17 7.63 -52.48 -0.40 1.77 16 7 C 0.08 2.16 5.41 -17.82 -0.10 2.07 16 8 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 9 Si 0.86 21.25 25.76 -169.99 -4.38 16.87 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.24 -5.58 5.10 56.52 0.29 -5.29 16 13 N -0.67 -14.06 5.74 -107.95 -0.62 -14.68 16 14 C 0.07 1.25 5.16 -3.82 -0.02 1.23 16 15 C 0.08 1.27 3.50 -25.68 -0.09 1.18 16 16 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 17 C -0.15 -1.81 6.60 -24.63 -0.16 -1.98 16 18 C -0.15 -1.52 6.28 -25.11 -0.16 -1.68 16 19 C 0.09 1.11 1.19 -90.05 -0.11 1.00 16 20 C -0.16 -1.76 8.60 37.15 0.32 -1.45 16 21 C -0.14 -1.49 8.68 37.16 0.32 -1.17 16 22 O -0.34 -5.50 10.56 -35.23 -0.37 -5.87 16 23 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 1.31 7.62 -51.93 -0.40 0.91 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.05 1.23 4.40 -51.93 -0.23 1.00 16 28 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.34 7.12 7.95 -39.29 -0.31 6.81 16 30 H 0.07 1.25 8.02 -51.93 -0.42 0.84 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.91 8.06 -51.93 -0.42 0.49 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.67 7.70 -51.93 -0.40 0.27 16 35 H 0.07 0.68 7.70 -51.93 -0.40 0.28 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 317.64 15.07 4.79 4.79 Total: -1.00 -30.10 317.64 -7.62 -37.72 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -7.62 Total: 4.75 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -0.18 Total: -16.94 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 0.15 Total: -41.31 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.37 Total: -5.87 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.38 Total: 16.87 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.10 -7.62 -37.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570407729.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.694 kcal (2) G-P(sol) polarization free energy of solvation -30.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds