Wall clock time and date at job start Sun Mar 29 2020 23:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46764 * 2 1 4 4 H 1.08994 * 109.47174 * 54.78869 * 3 2 1 5 5 C 1.50696 * 109.46954 * 174.78973 * 3 2 1 6 6 H 1.08003 * 119.99953 * 114.63197 * 5 3 2 7 7 C 1.37875 * 120.00353 * 294.63258 * 5 3 2 8 8 N 1.31513 * 120.00680 * 171.19141 * 7 5 3 9 9 Si 1.86805 * 119.99810 * 351.18942 * 7 5 3 10 10 H 1.48501 * 109.47154 * 266.25266 * 9 7 5 11 11 H 1.48498 * 109.47361 * 146.25139 * 9 7 5 12 12 H 1.48506 * 109.47071 * 26.24930 * 9 7 5 13 13 N 1.46898 * 109.46952 * 294.78994 * 3 2 1 14 14 C 1.46903 * 111.00007 * 130.85525 * 13 3 2 15 15 C 1.53002 * 109.47127 * 185.12041 * 14 13 3 16 16 H 1.09005 * 110.54930 * 305.69696 * 15 14 13 17 17 C 1.54996 * 110.61806 * 182.82543 * 15 14 13 18 18 C 1.54987 * 102.00817 * 204.59468 * 17 15 14 19 19 C 1.54099 * 104.25643 * 20.66162 * 18 17 15 20 20 C 1.52988 * 109.88026 * 242.74330 * 19 18 17 21 21 C 1.53000 * 110.00034 * 121.65916 * 19 18 17 22 22 O 1.43742 * 107.29010 * 2.16748 * 19 18 17 23 23 H 1.09004 * 109.47268 * 294.88579 * 1 2 3 24 24 H 1.08996 * 109.47326 * 54.89214 * 1 2 3 25 25 H 1.09003 * 109.46767 * 174.89036 * 1 2 3 26 26 H 1.08995 * 109.47325 * 240.00121 * 2 1 3 27 27 H 1.09002 * 109.47080 * 119.99557 * 2 1 3 28 28 H 0.97001 * 120.00538 * 179.97438 * 8 7 5 29 29 H 1.00897 * 110.99907 * 254.80859 * 13 3 2 30 30 H 1.08998 * 109.46932 * 305.11996 * 14 13 3 31 31 H 1.09002 * 109.47238 * 65.11724 * 14 13 3 32 32 H 1.09003 * 110.90223 * 322.66484 * 17 15 14 33 33 H 1.08996 * 110.91200 * 86.27389 * 17 15 14 34 34 H 1.08999 * 110.33786 * 262.02035 * 18 17 15 35 35 H 1.09003 * 110.68263 * 139.47866 * 18 17 15 36 36 H 1.09001 * 109.47482 * 179.28334 * 20 19 18 37 37 H 1.09001 * 109.47136 * 299.28378 * 20 19 18 38 38 H 1.09005 * 109.47735 * 59.28134 * 20 19 18 39 39 H 1.09000 * 109.47293 * 300.63811 * 21 19 18 40 40 H 1.08997 * 109.47344 * 60.64338 * 21 19 18 41 41 H 1.09002 * 109.46699 * 180.64175 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6024 1.9826 0.8396 5 6 3.5414 1.4446 0.1290 6 1 4.1527 1.8092 -0.6833 7 6 4.1347 0.9809 1.2840 8 7 5.4389 0.8194 1.3342 9 14 3.0861 0.5822 2.7776 10 1 3.0286 1.7660 3.6724 11 1 3.6830 -0.5634 3.5100 12 1 1.7128 0.2272 2.3378 13 7 1.6556 2.0977 -1.2574 14 6 1.0301 3.4021 -1.0016 15 6 0.5296 3.9951 -2.3202 16 1 1.3367 4.0368 -3.0517 17 6 -0.0726 5.4047 -2.0910 18 6 -1.0452 5.5388 -3.2903 19 6 -1.3008 4.0859 -3.7358 20 6 -0.7903 3.8821 -5.1635 21 6 -2.7971 3.7737 -3.6690 22 8 -0.5819 3.2294 -2.8327 23 1 -0.3634 0.4325 0.9323 24 1 -0.3634 0.5910 -0.8407 25 1 -0.3633 -1.0236 -0.0915 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 5.8564 0.4935 2.1469 29 1 2.4492 2.1919 -1.8733 30 1 0.1902 3.2746 -0.3186 31 1 1.7623 4.0750 -0.5553 32 1 -0.6141 5.4474 -1.1460 33 1 0.7028 6.1698 -2.1284 34 1 -0.5789 6.1080 -4.0944 35 1 -1.9766 6.0121 -2.9795 36 1 -0.9628 2.8496 -5.4672 37 1 -1.3216 4.5529 -5.8386 38 1 0.2774 4.0986 -5.2021 39 1 -3.1522 3.9132 -2.6479 40 1 -3.3384 4.4439 -4.3367 41 1 -2.9668 2.7413 -3.9747 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570407729.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:57 Heat of formation + Delta-G solvation = -79.549595 kcal Electronic energy + Delta-G solvation = -18335.507507 eV Core-core repulsion = 15634.951152 eV Total energy + Delta-G solvation = -2700.556355 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.77378 -38.13943 -34.96602 -34.00379 -33.26698 -32.28583 -29.50116 -28.23108 -27.34917 -24.46523 -23.57709 -22.12731 -21.31759 -20.88077 -19.08486 -17.56301 -16.94242 -16.35706 -16.07606 -15.64690 -15.15778 -14.85005 -14.64305 -14.57520 -14.30934 -13.80581 -13.61970 -13.47415 -13.11178 -13.02317 -12.80877 -12.70869 -12.55768 -12.47766 -12.34596 -12.20915 -11.80206 -11.51178 -11.45921 -11.44859 -11.18586 -11.00546 -10.60472 -10.44043 -9.01313 -8.33047 -6.36576 1.32518 1.36971 1.48098 2.33679 2.93786 3.02700 3.46127 3.71228 3.93674 3.97586 4.13041 4.29175 4.36155 4.44799 4.54004 4.57238 4.60251 4.65932 4.73949 4.78669 4.86178 4.88822 4.93589 4.95223 5.04371 5.05789 5.17154 5.21826 5.27043 5.33928 5.38710 5.45846 5.49606 5.54313 5.76596 6.05159 6.27789 6.45196 6.64976 6.86157 7.31888 8.83049 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.035433 B = 0.005748 C = 0.005467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.024945 B = 4870.052096 C = 5120.095617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.112 4.112 3 C 0.194 3.806 4 H 0.017 0.983 5 C -0.544 4.544 6 H 0.035 0.965 7 C 0.019 3.981 8 N -0.945 5.945 9 Si 0.923 3.077 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.215 1.215 13 N -0.673 5.673 14 C 0.070 3.930 15 C 0.087 3.913 16 H 0.059 0.941 17 C -0.147 4.147 18 C -0.138 4.138 19 C 0.079 3.921 20 C -0.159 4.159 21 C -0.138 4.138 22 O -0.373 6.373 23 H 0.040 0.960 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.042 0.958 27 H 0.044 0.956 28 H 0.265 0.735 29 H 0.330 0.670 30 H 0.066 0.934 31 H 0.033 0.967 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.051 0.949 37 H 0.085 0.915 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.089 0.911 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.632 9.302 -8.635 20.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.150 4.150 3 C 0.084 3.916 4 H 0.035 0.965 5 C -0.582 4.582 6 H 0.053 0.947 7 C -0.179 4.179 8 N -0.585 5.585 9 Si 0.747 3.253 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.138 1.138 13 N -0.302 5.302 14 C -0.060 4.060 15 C 0.029 3.971 16 H 0.077 0.923 17 C -0.185 4.185 18 C -0.175 4.175 19 C 0.039 3.961 20 C -0.216 4.216 21 C -0.195 4.195 22 O -0.293 6.293 23 H 0.059 0.941 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.147 0.853 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.166 8.688 -8.535 21.047 hybrid contribution 1.462 0.288 1.006 1.798 sum -15.704 8.976 -7.529 19.593 Atomic orbital electron populations 1.21626 0.95421 1.00897 1.01115 1.21852 0.95664 0.97841 0.99662 1.19341 0.91550 0.92305 0.88360 0.96495 1.21924 0.92250 1.42415 1.01617 0.94719 1.25822 0.95825 0.94344 1.01946 1.70086 1.11777 1.47572 1.29046 0.86311 0.82213 0.77961 0.78836 1.20463 1.21249 1.13793 1.60624 1.33632 1.20942 1.14961 1.21978 0.97700 0.90362 0.95927 1.23031 0.89578 0.90336 0.94180 0.92299 1.23164 0.99569 0.96101 0.99711 1.23033 1.00635 0.95856 0.97987 1.22383 0.93426 0.90050 0.90207 1.22232 1.01251 1.02369 0.95783 1.21877 0.92723 1.02314 1.02616 1.89030 1.40941 1.37802 1.61560 0.94062 0.92089 0.92849 0.93883 0.93787 0.92600 0.85336 0.91507 0.94842 0.90479 0.89149 0.89450 0.89004 0.92991 0.89659 0.93196 0.92484 0.89239 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.97 9.86 71.98 0.71 -4.26 16 2 C -0.11 -4.98 4.80 30.60 0.15 -4.83 16 3 C 0.19 9.20 1.72 44.17 0.08 9.27 16 4 H 0.02 0.82 6.35 -2.39 -0.02 0.80 16 5 C -0.54 -30.96 9.08 25.60 0.23 -30.73 16 6 H 0.03 2.18 7.63 -2.91 -0.02 2.16 16 7 C 0.02 1.10 5.41 84.65 0.46 1.56 16 8 N -0.95 -59.27 13.96 21.45 0.30 -58.97 16 9 Si 0.92 43.68 25.76 68.60 1.77 45.44 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 12 H -0.22 -9.27 5.10 99.48 0.51 -8.76 16 13 N -0.67 -28.21 5.74 -495.45 -2.84 -31.06 16 14 C 0.07 2.49 5.16 86.30 0.45 2.93 16 15 C 0.09 2.54 3.50 31.28 0.11 2.64 16 16 H 0.06 1.76 8.13 -2.38 -0.02 1.74 16 17 C -0.15 -3.21 6.60 31.96 0.21 -3.00 16 18 C -0.14 -2.46 6.28 31.65 0.20 -2.26 16 19 C 0.08 1.74 1.19 -10.43 -0.01 1.73 16 20 C -0.16 -3.19 8.60 71.98 0.62 -2.57 16 21 C -0.14 -2.60 8.68 71.98 0.62 -1.97 16 22 O -0.37 -11.59 10.56 -148.98 -1.57 -13.16 16 23 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.06 2.32 7.62 -2.39 -0.02 2.31 16 25 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.04 1.97 8.14 -2.39 -0.02 1.96 16 27 H 0.04 2.01 4.40 -2.39 -0.01 2.00 16 28 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 29 H 0.33 14.44 7.95 -89.70 -0.71 13.73 16 30 H 0.07 2.38 8.02 -2.39 -0.02 2.36 16 31 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 1.67 8.06 -2.39 -0.02 1.65 16 33 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.09 1.31 7.70 -2.39 -0.02 1.29 16 35 H 0.09 1.34 7.70 -2.39 -0.02 1.32 16 36 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.05 1.07 8.13 -2.38 -0.02 1.05 16 39 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -65.59 317.64 1.53 -64.06 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.06 Total: 25.15 kcal Atomic # 6 Polarization: -35.29 SS G_CDS: 3.82 Total: -31.47 kcal Atomic # 7 Polarization: -87.48 SS G_CDS: -2.54 Total: -90.03 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -1.57 Total: -13.16 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.77 Total: 45.44 kcal Total: -65.59 1.53 -64.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570407729.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.490 kcal (2) G-P(sol) polarization free energy of solvation -65.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds