Wall clock time and date at job start Sun Mar 29 2020 23:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46943 * 2 1 4 4 H 1.09008 * 109.46890 * 54.51489 * 3 2 1 5 5 C 1.50697 * 109.47413 * 174.51562 * 3 2 1 6 6 H 1.07994 * 119.99805 * 120.27065 * 5 3 2 7 7 C 1.37875 * 119.99721 * 300.01042 * 5 3 2 8 8 N 1.31514 * 120.00367 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99985 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47287 * 59.99088 * 9 7 5 11 11 H 1.48499 * 109.47285 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46556 * 299.99537 * 9 7 5 13 13 N 1.46897 * 109.47187 * 294.52100 * 3 2 1 14 14 C 1.46906 * 110.99790 * 154.42815 * 13 3 2 15 15 C 1.53000 * 109.46559 * 174.77870 * 14 13 3 16 16 H 1.08998 * 110.55931 * 57.12071 * 15 14 13 17 17 C 1.55007 * 110.61578 * 180.02562 * 15 14 13 18 18 C 1.54809 * 102.09439 * 155.52386 * 17 15 14 19 19 C 1.54101 * 104.18543 * 339.11845 * 18 17 15 20 20 C 1.52997 * 109.88022 * 117.39646 * 19 18 17 21 21 C 1.53006 * 109.87797 * 238.54755 * 19 18 17 22 22 O 1.43745 * 107.29540 * 357.96846 * 19 18 17 23 23 H 1.09005 * 109.46900 * 305.94382 * 1 2 3 24 24 H 1.08997 * 109.47363 * 65.94225 * 1 2 3 25 25 H 1.09003 * 109.47045 * 185.94565 * 1 2 3 26 26 H 1.08999 * 109.46812 * 240.00509 * 2 1 3 27 27 H 1.08991 * 109.47534 * 120.00243 * 2 1 3 28 28 H 0.97005 * 120.00419 * 180.02562 * 8 7 5 29 29 H 1.00895 * 111.00161 * 30.47137 * 13 3 2 30 30 H 1.09001 * 109.47060 * 294.77344 * 14 13 3 31 31 H 1.08994 * 109.47219 * 54.78153 * 14 13 3 32 32 H 1.09002 * 110.90274 * 273.72399 * 17 15 14 33 33 H 1.08997 * 110.90414 * 37.28779 * 17 15 14 34 34 H 1.08996 * 110.48947 * 97.79173 * 18 17 15 35 35 H 1.09000 * 110.48649 * 220.44595 * 18 17 15 36 36 H 1.09008 * 109.47046 * 59.99775 * 20 19 18 37 37 H 1.08997 * 109.47452 * 179.97438 * 20 19 18 38 38 H 1.08999 * 109.46889 * 299.99880 * 20 19 18 39 39 H 1.09001 * 109.47221 * 60.00075 * 21 19 18 40 40 H 1.09003 * 109.47333 * 180.02562 * 21 19 18 41 41 H 1.08998 * 109.46818 * 300.00125 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5986 1.9839 0.8369 5 6 3.5408 1.4448 0.1358 6 1 4.1520 1.8911 -0.6346 7 6 4.1334 0.8819 1.2462 8 7 3.3888 0.3434 2.1871 9 14 5.9938 0.8841 1.4142 10 1 6.4893 2.2839 1.4139 11 1 6.3766 0.2242 2.6883 12 1 6.5946 0.1462 0.2741 13 7 1.6613 2.0958 -1.2600 14 6 1.5679 3.5521 -1.0907 15 6 1.3006 4.2070 -2.4473 16 1 0.3930 3.8027 -2.8954 17 6 1.1977 5.7466 -2.2993 18 6 1.5709 6.2347 -3.7202 19 6 2.3417 5.0509 -4.3359 20 6 1.5879 4.5171 -5.5555 21 6 3.7460 5.5006 -4.7445 22 8 2.4296 4.0284 -3.3294 23 1 -0.3633 0.6033 0.8320 24 1 -0.3634 0.4189 -0.9384 25 1 -0.3633 -1.0222 0.1065 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.8057 -0.0523 2.9685 29 1 0.7973 1.7172 -1.6182 30 1 0.7521 3.7868 -0.4069 31 1 2.5047 3.9312 -0.6825 32 1 0.1820 6.0453 -2.0396 33 1 1.9102 6.1148 -1.5612 34 1 0.6721 6.4470 -4.2990 35 1 2.2079 7.1175 -3.6652 36 1 1.4916 5.3090 -6.2984 37 1 2.1388 3.6808 -5.9858 38 1 0.5964 4.1815 -5.2515 39 1 4.2819 5.8611 -3.8665 40 1 4.2849 4.6588 -5.1793 41 1 3.6713 6.3023 -5.4792 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570407730.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:59 Heat of formation + Delta-G solvation = -63.707578 kcal Electronic energy + Delta-G solvation = -18289.969285 eV Core-core repulsion = 15590.099891 eV Total energy + Delta-G solvation = -2699.869394 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.63108 -36.25374 -33.46675 -32.19732 -31.69145 -30.64037 -27.45503 -27.24590 -25.68432 -23.10504 -22.05215 -20.72191 -19.81975 -19.39645 -16.35432 -16.12346 -15.29620 -14.92740 -14.69016 -14.06662 -13.71594 -13.56877 -13.28755 -12.98489 -12.57633 -12.42939 -12.11541 -11.94922 -11.81027 -11.54604 -11.35447 -11.17424 -11.09145 -10.83086 -10.63074 -10.56554 -10.55017 -10.39633 -9.87219 -9.60590 -9.46920 -9.22195 -8.98636 -8.26250 -7.08056 -5.88315 -3.91362 3.40612 3.43619 3.48646 4.07095 4.52592 4.69478 4.82716 4.93824 5.10179 5.24848 5.33948 5.40654 5.61086 5.62273 5.70569 5.71723 5.83296 5.87731 5.91554 5.99008 6.08167 6.17681 6.20746 6.23302 6.26397 6.34822 6.39565 6.46191 6.71755 6.89434 7.14027 7.25689 7.44207 7.57946 7.85757 8.02414 8.40377 8.48940 8.87074 9.17979 9.73207 11.17136 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022825 B = 0.006524 C = 0.005599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.435346 B = 4291.071710 C = 4999.762580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.219 3.781 4 H -0.001 1.001 5 C -0.488 4.488 6 H 0.063 0.937 7 C 0.053 3.947 8 N -0.900 5.900 9 Si 0.895 3.105 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.678 5.678 14 C 0.075 3.925 15 C 0.085 3.915 16 H 0.058 0.942 17 C -0.152 4.152 18 C -0.145 4.145 19 C 0.089 3.911 20 C -0.160 4.160 21 C -0.141 4.141 22 O -0.337 6.337 23 H 0.041 0.959 24 H 0.035 0.965 25 H 0.037 0.963 26 H 0.041 0.959 27 H 0.099 0.901 28 H 0.259 0.741 29 H 0.314 0.686 30 H 0.026 0.974 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.662 9.911 -10.746 15.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.112 3.888 4 H 0.017 0.983 5 C -0.527 4.527 6 H 0.081 0.919 7 C -0.147 4.147 8 N -0.540 5.540 9 Si 0.723 3.277 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.203 1.203 13 N -0.309 5.309 14 C -0.056 4.056 15 C 0.027 3.973 16 H 0.076 0.924 17 C -0.190 4.190 18 C -0.183 4.183 19 C 0.049 3.951 20 C -0.217 4.217 21 C -0.198 4.198 22 O -0.255 6.255 23 H 0.060 0.940 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.117 0.883 28 H 0.068 0.932 29 H 0.131 0.869 30 H 0.044 0.956 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.815 9.666 -10.781 15.260 hybrid contribution -0.074 0.200 0.643 0.677 sum -4.889 9.866 -10.139 14.968 Atomic orbital electron populations 1.21881 0.99699 0.99662 0.99451 1.21765 0.91137 1.00436 1.03078 1.19150 0.95501 0.89929 0.84228 0.98315 1.21225 0.91359 1.35905 1.04225 0.91927 1.24957 0.98019 0.95800 0.95876 1.69867 1.34682 1.39843 1.09627 0.86612 0.85969 0.78102 0.77001 1.20483 1.21554 1.20320 1.60595 1.35927 1.01538 1.32842 1.21848 1.00869 0.90751 0.92090 1.23157 0.89367 0.92992 0.91825 0.92396 1.23165 1.02138 0.96599 0.97114 1.23010 1.00339 0.98559 0.96347 1.22084 0.95469 0.87915 0.89625 1.22232 1.00613 1.01382 0.97504 1.21864 0.95436 1.01072 1.01435 1.89147 1.45773 1.50825 1.39805 0.93967 0.94645 0.94419 0.94007 0.88271 0.93160 0.86935 0.95641 0.90063 0.90790 0.90338 0.91110 0.90795 0.92315 0.91888 0.92543 0.91925 0.91930 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.64 37.16 0.36 -2.60 16 2 C -0.13 -3.05 5.36 -26.73 -0.14 -3.19 16 3 C 0.22 5.62 2.02 -68.87 -0.14 5.48 16 4 H 0.00 -0.02 7.85 -51.92 -0.41 -0.43 16 5 C -0.49 -13.97 8.57 -34.44 -0.30 -14.26 16 6 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -26.14 11.29 55.43 0.63 -25.52 16 9 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 N -0.68 -15.09 6.25 -107.95 -0.67 -15.77 16 14 C 0.07 1.46 5.20 -3.82 -0.02 1.44 16 15 C 0.08 1.38 3.51 -25.67 -0.09 1.29 16 16 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 17 C -0.15 -1.97 6.59 -24.72 -0.16 -2.13 16 18 C -0.14 -1.66 6.27 -25.20 -0.16 -1.82 16 19 C 0.09 1.20 1.19 -90.04 -0.11 1.10 16 20 C -0.16 -1.88 8.61 37.16 0.32 -1.56 16 21 C -0.14 -1.73 8.67 37.16 0.32 -1.40 16 22 O -0.34 -6.07 10.54 -35.23 -0.37 -6.45 16 23 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.03 0.63 6.66 -51.93 -0.35 0.28 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.10 2.69 5.94 -51.93 -0.31 2.38 16 28 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.31 6.37 6.64 -39.29 -0.26 6.11 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 1.78 7.94 -51.93 -0.41 1.37 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 1.05 8.06 -51.93 -0.42 0.63 16 34 H 0.07 0.70 7.70 -51.93 -0.40 0.30 16 35 H 0.07 0.76 7.70 -51.93 -0.40 0.36 16 36 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.67 8.12 -51.93 -0.42 0.24 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 322.12 15.07 4.85 4.85 Total: -1.00 -30.03 322.12 -8.36 -38.40 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -7.57 Total: 3.56 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -0.21 Total: -16.25 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: -0.05 Total: -41.28 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.37 Total: -6.45 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.03 -8.36 -38.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570407730.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.309 kcal (2) G-P(sol) polarization free energy of solvation -30.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds