Wall clock time and date at job start Sun Mar 29 2020 23:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46943 * 2 1 4 4 H 1.09008 * 109.46890 * 54.51489 * 3 2 1 5 5 C 1.50697 * 109.47413 * 174.51562 * 3 2 1 6 6 H 1.07994 * 119.99805 * 120.27065 * 5 3 2 7 7 C 1.37875 * 119.99721 * 300.01042 * 5 3 2 8 8 N 1.31514 * 120.00367 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99985 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47287 * 59.99088 * 9 7 5 11 11 H 1.48499 * 109.47285 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46556 * 299.99537 * 9 7 5 13 13 N 1.46897 * 109.47187 * 294.52100 * 3 2 1 14 14 C 1.46906 * 110.99790 * 154.42815 * 13 3 2 15 15 C 1.53000 * 109.46559 * 174.77870 * 14 13 3 16 16 H 1.08998 * 110.55931 * 57.12071 * 15 14 13 17 17 C 1.55007 * 110.61578 * 180.02562 * 15 14 13 18 18 C 1.54809 * 102.09439 * 155.52386 * 17 15 14 19 19 C 1.54101 * 104.18543 * 339.11845 * 18 17 15 20 20 C 1.52997 * 109.88022 * 117.39646 * 19 18 17 21 21 C 1.53006 * 109.87797 * 238.54755 * 19 18 17 22 22 O 1.43745 * 107.29540 * 357.96846 * 19 18 17 23 23 H 1.09005 * 109.46900 * 305.94382 * 1 2 3 24 24 H 1.08997 * 109.47363 * 65.94225 * 1 2 3 25 25 H 1.09003 * 109.47045 * 185.94565 * 1 2 3 26 26 H 1.08999 * 109.46812 * 240.00509 * 2 1 3 27 27 H 1.08991 * 109.47534 * 120.00243 * 2 1 3 28 28 H 0.97005 * 120.00419 * 180.02562 * 8 7 5 29 29 H 1.00895 * 111.00161 * 30.47137 * 13 3 2 30 30 H 1.09001 * 109.47060 * 294.77344 * 14 13 3 31 31 H 1.08994 * 109.47219 * 54.78153 * 14 13 3 32 32 H 1.09002 * 110.90274 * 273.72399 * 17 15 14 33 33 H 1.08997 * 110.90414 * 37.28779 * 17 15 14 34 34 H 1.08996 * 110.48947 * 97.79173 * 18 17 15 35 35 H 1.09000 * 110.48649 * 220.44595 * 18 17 15 36 36 H 1.09008 * 109.47046 * 59.99775 * 20 19 18 37 37 H 1.08997 * 109.47452 * 179.97438 * 20 19 18 38 38 H 1.08999 * 109.46889 * 299.99880 * 20 19 18 39 39 H 1.09001 * 109.47221 * 60.00075 * 21 19 18 40 40 H 1.09003 * 109.47333 * 180.02562 * 21 19 18 41 41 H 1.08998 * 109.46818 * 300.00125 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5986 1.9839 0.8369 5 6 3.5408 1.4448 0.1358 6 1 4.1520 1.8911 -0.6346 7 6 4.1334 0.8819 1.2462 8 7 3.3888 0.3434 2.1871 9 14 5.9938 0.8841 1.4142 10 1 6.4893 2.2839 1.4139 11 1 6.3766 0.2242 2.6883 12 1 6.5946 0.1462 0.2741 13 7 1.6613 2.0958 -1.2600 14 6 1.5679 3.5521 -1.0907 15 6 1.3006 4.2070 -2.4473 16 1 0.3930 3.8027 -2.8954 17 6 1.1977 5.7466 -2.2993 18 6 1.5709 6.2347 -3.7202 19 6 2.3417 5.0509 -4.3359 20 6 1.5879 4.5171 -5.5555 21 6 3.7460 5.5006 -4.7445 22 8 2.4296 4.0284 -3.3294 23 1 -0.3633 0.6033 0.8320 24 1 -0.3634 0.4189 -0.9384 25 1 -0.3633 -1.0222 0.1065 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.8057 -0.0523 2.9685 29 1 0.7973 1.7172 -1.6182 30 1 0.7521 3.7868 -0.4069 31 1 2.5047 3.9312 -0.6825 32 1 0.1820 6.0453 -2.0396 33 1 1.9102 6.1148 -1.5612 34 1 0.6721 6.4470 -4.2990 35 1 2.2079 7.1175 -3.6652 36 1 1.4916 5.3090 -6.2984 37 1 2.1388 3.6808 -5.9858 38 1 0.5964 4.1815 -5.2515 39 1 4.2819 5.8611 -3.8665 40 1 4.2849 4.6588 -5.1793 41 1 3.6713 6.3023 -5.4792 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570407730.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:59 Heat of formation + Delta-G solvation = -83.051888 kcal Electronic energy + Delta-G solvation = -18290.808117 eV Core-core repulsion = 15590.099891 eV Total energy + Delta-G solvation = -2700.708226 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.77346 -38.10073 -34.98421 -33.84934 -33.16008 -32.11356 -29.10299 -28.23904 -27.39835 -24.80645 -23.50340 -22.09101 -21.30393 -20.86851 -18.36602 -17.50731 -16.73719 -16.61451 -16.12340 -15.67027 -15.29146 -14.68806 -14.64224 -14.44468 -14.08903 -13.90725 -13.51794 -13.17748 -13.07193 -12.98674 -12.80181 -12.69023 -12.55022 -12.48189 -12.34949 -12.12291 -11.95452 -11.53981 -11.50918 -11.44278 -11.20846 -11.02359 -10.43605 -10.42249 -8.93754 -8.06729 -6.18289 1.39228 1.41189 1.49403 2.43561 2.95050 3.17279 3.52752 3.71923 3.95672 3.98074 4.14700 4.28770 4.39202 4.47260 4.54420 4.57433 4.58613 4.63258 4.72803 4.77197 4.84048 4.92049 4.93946 5.03902 5.06584 5.09817 5.15328 5.24350 5.28939 5.32996 5.38423 5.45481 5.59226 5.74761 5.89802 6.30439 6.37624 6.54269 6.95198 7.03935 7.50437 8.96059 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022825 B = 0.006524 C = 0.005599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.435346 B = 4291.071710 C = 4999.762580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.121 4.121 3 C 0.226 3.774 4 H -0.031 1.031 5 C -0.511 4.511 6 H 0.042 0.958 7 C 0.010 3.990 8 N -0.919 5.919 9 Si 0.953 3.047 10 H -0.276 1.276 11 H -0.279 1.279 12 H -0.275 1.275 13 N -0.683 5.683 14 C 0.076 3.924 15 C 0.087 3.913 16 H 0.071 0.929 17 C -0.148 4.148 18 C -0.136 4.136 19 C 0.075 3.925 20 C -0.155 4.155 21 C -0.140 4.140 22 O -0.379 6.379 23 H 0.038 0.962 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.033 0.967 27 H 0.068 0.932 28 H 0.261 0.739 29 H 0.326 0.674 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.048 0.952 38 H 0.055 0.945 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.567 11.081 -12.089 17.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C 0.118 3.882 4 H -0.013 1.013 5 C -0.550 4.550 6 H 0.060 0.940 7 C -0.188 4.188 8 N -0.560 5.560 9 Si 0.779 3.221 10 H -0.201 1.201 11 H -0.204 1.204 12 H -0.201 1.201 13 N -0.315 5.315 14 C -0.053 4.053 15 C 0.029 3.971 16 H 0.089 0.911 17 C -0.186 4.186 18 C -0.173 4.173 19 C 0.036 3.964 20 C -0.213 4.213 21 C -0.197 4.197 22 O -0.300 6.300 23 H 0.057 0.943 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.052 0.948 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.145 0.855 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.114 0.886 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.734 10.847 -12.138 17.258 hybrid contribution 0.220 -0.154 1.041 1.075 sum -5.514 10.693 -11.097 16.367 Atomic orbital electron populations 1.21740 0.96011 1.01219 1.00549 1.21588 0.94452 0.98848 1.01085 1.18926 0.93902 0.90771 0.84651 1.01349 1.21431 0.93047 1.36377 1.04159 0.93959 1.25651 1.02249 0.95345 0.95509 1.69983 1.36207 1.39932 1.09833 0.85687 0.80916 0.78183 0.77268 1.20148 1.20410 1.20097 1.60472 1.36898 1.03138 1.31017 1.21835 0.99485 0.89211 0.94807 1.23103 0.89321 0.95005 0.89648 0.91122 1.23148 1.03386 0.93923 0.98138 1.23003 1.01300 0.97923 0.95094 1.22435 0.96655 0.87933 0.89412 1.22202 0.99948 1.01847 0.97279 1.21898 0.94708 1.01527 1.01608 1.89102 1.46666 1.52924 1.41261 0.94307 0.92353 0.92324 0.94793 0.91331 0.92999 0.85539 0.94558 0.93487 0.88323 0.91472 0.88646 0.89427 0.89458 0.93242 0.92579 0.93199 0.93251 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.29 9.64 71.98 0.69 -4.59 16 2 C -0.12 -5.95 5.36 30.60 0.16 -5.79 16 3 C 0.23 11.92 2.02 44.17 0.09 12.01 16 4 H -0.03 -1.79 7.85 -2.38 -0.02 -1.81 16 5 C -0.51 -30.28 8.57 25.60 0.22 -30.06 16 6 H 0.04 2.61 7.81 -2.91 -0.02 2.59 16 7 C 0.01 0.60 5.29 84.65 0.45 1.05 16 8 N -0.92 -54.45 11.29 21.45 0.24 -54.21 16 9 Si 0.95 46.23 29.54 68.60 2.03 48.26 16 10 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 13 N -0.68 -30.91 6.25 -495.44 -3.10 -34.01 16 14 C 0.08 3.04 5.20 86.30 0.45 3.49 16 15 C 0.09 2.76 3.51 31.28 0.11 2.87 16 16 H 0.07 2.04 8.12 -2.39 -0.02 2.02 16 17 C -0.15 -3.55 6.59 31.90 0.21 -3.33 16 18 C -0.14 -2.69 6.27 31.58 0.20 -2.50 16 19 C 0.07 1.89 1.19 -10.42 -0.01 1.88 16 20 C -0.16 -3.30 8.61 71.98 0.62 -2.68 16 21 C -0.14 -3.26 8.67 71.98 0.62 -2.64 16 22 O -0.38 -13.67 10.54 -148.98 -1.57 -15.24 16 23 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 24 H 0.06 1.95 6.66 -2.39 -0.02 1.94 16 25 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.07 3.80 5.94 -2.39 -0.01 3.79 16 28 H 0.26 14.70 8.31 -92.70 -0.77 13.93 16 29 H 0.33 13.10 6.64 -89.70 -0.60 12.50 16 30 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.05 2.16 7.94 -2.39 -0.02 2.15 16 32 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.07 1.75 8.06 -2.39 -0.02 1.73 16 34 H 0.09 1.45 7.70 -2.39 -0.02 1.43 16 35 H 0.09 1.52 7.70 -2.39 -0.02 1.50 16 36 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.06 1.18 8.12 -2.39 -0.02 1.16 16 39 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.09 1.53 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -66.80 322.12 1.79 -65.01 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 0.38 Total: 20.47 kcal Atomic # 6 Polarization: -34.10 SS G_CDS: 3.81 Total: -30.28 kcal Atomic # 7 Polarization: -85.37 SS G_CDS: -2.85 Total: -88.22 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -1.57 Total: -15.24 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -66.80 1.79 -65.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570407730.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.039 kcal (2) G-P(sol) polarization free energy of solvation -66.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds