Wall clock time and date at job start Sun Mar 29 2020 22:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47059 * 2 1 4 4 C 1.52994 * 109.47122 * 239.99988 * 2 1 3 5 5 C 1.52999 * 109.46737 * 119.99592 * 2 1 3 6 6 H 1.09001 * 109.54866 * 299.89258 * 5 2 1 7 7 C 1.53101 * 109.50383 * 60.00429 * 5 2 1 8 8 N 1.47019 * 109.25671 * 176.78050 * 7 5 2 9 9 C 1.46894 * 111.00274 * 177.60788 * 8 7 5 10 10 C 1.52997 * 109.47515 * 169.99909 * 9 8 7 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 C 1.47015 * 110.74910 * 301.38223 * 8 7 5 20 20 C 1.53096 * 109.25920 * 58.61756 * 19 8 7 21 21 O 1.43012 * 109.26103 * 303.14822 * 20 19 8 22 22 H 1.09003 * 109.47229 * 300.00405 * 1 2 3 23 23 H 1.08997 * 109.46914 * 59.99917 * 1 2 3 24 24 H 1.08995 * 109.47371 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47055 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47004 * 300.00237 * 3 2 1 27 27 H 1.09002 * 109.47002 * 60.00038 * 3 2 1 28 28 H 1.09003 * 109.46828 * 299.99870 * 4 2 1 29 29 H 1.08997 * 109.47149 * 60.00238 * 4 2 1 30 30 H 1.08998 * 109.47016 * 180.02562 * 4 2 1 31 31 H 1.08997 * 109.50878 * 56.84470 * 7 5 2 32 32 H 1.08997 * 109.50569 * 296.71361 * 7 5 2 33 33 H 1.09002 * 109.47104 * 49.99641 * 9 8 7 34 34 H 1.08998 * 109.46828 * 290.00473 * 9 8 7 35 35 H 1.09002 * 109.47153 * 59.99762 * 10 9 8 36 36 H 1.09001 * 109.46832 * 299.99953 * 10 9 8 37 37 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 38 38 H 1.09008 * 109.50164 * 178.54980 * 19 8 7 39 39 H 1.09000 * 109.51011 * 298.67804 * 19 8 7 40 40 H 1.09001 * 109.50647 * 183.20912 * 20 19 8 41 41 H 1.09004 * 109.54504 * 63.10841 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0399 -0.7212 1.2493 6 1 1.6788 -0.2071 2.1401 7 6 1.5300 -2.1648 1.2501 8 7 2.0856 -2.8746 2.4115 9 6 1.5752 -4.2502 2.4814 10 6 2.3548 -5.0304 3.5418 11 6 1.8306 -6.4414 3.6139 12 1 1.0226 -6.7510 2.9677 13 6 2.3834 -7.3375 4.5041 14 7 3.3677 -6.9607 5.2906 15 14 1.7342 -9.0868 4.5929 16 1 1.9010 -9.7444 3.2718 17 1 2.4909 -9.8439 5.6222 18 1 0.2944 -9.0627 4.9556 19 6 3.5553 -2.8591 2.3773 20 6 4.0448 -1.4086 2.3652 21 8 3.4701 -0.7260 1.2475 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 3.1300 1.4426 0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.6766 -1.7489 -1.2491 29 1 1.6767 -0.2074 -2.1391 30 1 3.1300 -0.7216 -1.2489 31 1 1.8462 -2.6630 0.3336 32 1 0.4417 -2.1663 1.3091 33 1 1.6978 -4.7330 1.5118 34 1 0.5182 -4.2325 2.7472 35 1 2.2321 -4.5476 4.5114 36 1 3.4117 -5.0481 3.2759 37 1 3.7564 -7.5910 5.9172 38 1 3.9452 -3.3675 3.2592 39 1 3.9039 -3.3685 1.4789 40 1 5.1316 -1.3919 2.2823 41 1 3.7427 -0.9140 3.2884 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577503619.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:34 Heat of formation + Delta-G solvation = -61.108774 kcal Electronic energy + Delta-G solvation = -18356.616038 eV Core-core repulsion = 15656.859337 eV Total energy + Delta-G solvation = -2699.756701 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.83756 -36.70879 -35.46493 -32.95610 -30.21378 -29.83351 -27.45302 -27.30648 -26.32517 -24.05508 -23.48198 -21.15977 -19.56778 -18.75417 -16.65891 -15.99283 -15.75532 -15.06001 -14.70927 -14.63469 -14.36773 -13.77058 -13.67549 -13.36487 -13.22042 -12.56133 -12.23472 -12.14955 -12.08195 -11.73227 -11.56043 -11.30576 -10.99268 -10.93560 -10.88144 -10.74479 -10.57743 -10.47297 -10.11617 -9.92879 -9.51523 -9.16258 -9.08118 -8.36483 -7.74914 -6.02469 -4.04932 3.32150 3.36514 3.38902 3.89450 4.29542 4.48501 4.76815 4.83073 5.00052 5.26197 5.31488 5.34177 5.46734 5.48425 5.56977 5.60638 5.67488 5.70248 5.77537 5.81952 5.90196 5.91972 6.03983 6.10154 6.16372 6.17734 6.29770 6.37120 6.38544 6.45641 6.49201 6.88991 7.40266 7.43400 7.55240 7.72950 7.81972 8.01208 8.40017 9.01165 9.58882 11.08943 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.044702 B = 0.004845 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.217915 B = 5777.762211 C = 6146.092886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.060 4.060 3 C -0.136 4.136 4 C -0.140 4.140 5 C 0.106 3.894 6 H 0.062 0.938 7 C 0.021 3.979 8 N -0.539 5.539 9 C 0.062 3.938 10 C 0.022 3.978 11 C -0.523 4.523 12 H 0.054 0.946 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.016 3.984 20 C 0.065 3.935 21 O -0.383 6.383 22 H 0.057 0.943 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.040 0.960 32 H 0.079 0.921 33 H 0.020 0.980 34 H 0.063 0.937 35 H 0.025 0.975 36 H 0.020 0.980 37 H 0.261 0.739 38 H 0.101 0.899 39 H 0.035 0.965 40 H 0.093 0.907 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.232 14.470 -9.892 17.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.061 4.061 3 C -0.193 4.193 4 C -0.197 4.197 5 C 0.048 3.952 6 H 0.080 0.920 7 C -0.108 4.108 8 N -0.264 5.264 9 C -0.064 4.064 10 C -0.016 4.016 11 C -0.562 4.562 12 H 0.072 0.928 13 C -0.142 4.142 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.112 4.112 20 C -0.012 4.012 21 O -0.302 6.302 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.097 0.903 33 H 0.038 0.962 34 H 0.081 0.919 35 H 0.043 0.957 36 H 0.038 0.962 37 H 0.071 0.929 38 H 0.119 0.881 39 H 0.054 0.946 40 H 0.111 0.889 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.157 14.731 -9.467 17.643 hybrid contribution -0.219 -1.701 -0.350 1.750 sum -2.376 13.030 -9.816 16.486 Atomic orbital electron populations 1.21918 0.93943 1.02314 1.01905 1.20527 0.95262 0.95749 0.94527 1.21786 1.01868 0.94561 1.01083 1.21866 1.01900 0.99981 0.95957 1.22101 0.81303 0.94593 0.97204 0.92016 1.22878 1.00269 0.94734 0.92885 1.62352 1.06552 1.18167 1.39311 1.22341 0.99792 0.84967 0.99313 1.19225 0.95066 0.93756 0.93512 1.21137 1.18512 0.95940 1.20577 0.92809 1.24985 0.95001 0.98744 0.95504 1.69950 1.24864 1.35398 1.23084 0.86641 0.79022 0.84515 0.77717 1.20285 1.21234 1.20196 1.22840 0.89149 0.96652 1.02608 1.22695 0.97690 0.91682 0.89146 1.87886 1.19341 1.76406 1.46578 0.92411 0.92293 0.92090 0.91839 0.92991 0.92946 0.92552 0.93093 0.91868 0.94199 0.90268 0.96182 0.91867 0.95700 0.96205 0.92899 0.88098 0.94637 0.88921 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.12 37.16 0.30 -1.12 16 2 C -0.06 -0.68 0.63 -154.51 -0.10 -0.78 16 3 C -0.14 -1.40 8.33 37.16 0.31 -1.09 16 4 C -0.14 -1.59 7.98 37.15 0.30 -1.29 16 5 C 0.11 1.48 2.07 -26.68 -0.06 1.43 16 6 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 7 C 0.02 0.33 4.19 -3.71 -0.02 0.31 16 8 N -0.54 -10.16 4.88 -234.31 -1.14 -11.31 16 9 C 0.06 1.35 5.22 -3.83 -0.02 1.33 16 10 C 0.02 0.56 4.24 -27.88 -0.12 0.44 16 11 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 12 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 15 Si 0.89 21.67 29.54 -169.99 -5.02 16.64 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 19 C 0.02 0.28 4.94 -3.71 -0.02 0.26 16 20 C 0.06 0.97 7.01 37.21 0.26 1.23 16 21 O -0.38 -5.79 9.12 -35.23 -0.32 -6.11 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.62 6.51 -51.93 -0.34 0.29 16 25 H 0.06 0.71 7.69 -51.93 -0.40 0.31 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.67 6.36 -51.93 -0.33 0.34 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.78 7.68 -51.93 -0.40 0.38 16 31 H 0.04 0.65 6.27 -51.93 -0.33 0.32 16 32 H 0.08 1.17 6.62 -51.93 -0.34 0.83 16 33 H 0.02 0.43 8.08 -51.93 -0.42 0.02 16 34 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.02 0.54 6.28 -51.93 -0.33 0.21 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.10 2.00 6.05 -51.92 -0.31 1.69 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 312.58 15.07 4.71 4.71 Total: -1.00 -29.77 312.58 -7.99 -37.77 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -7.39 Total: -2.84 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 0.43 Total: -12.84 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: -0.41 Total: -37.33 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.32 Total: -6.11 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.77 -7.99 -37.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577503619.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.344 kcal (2) G-P(sol) polarization free energy of solvation -29.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds