Wall clock time and date at job start Sun Mar 29 2020 22:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47059 * 2 1 4 4 C 1.52994 * 109.47122 * 239.99988 * 2 1 3 5 5 C 1.52999 * 109.46737 * 119.99592 * 2 1 3 6 6 H 1.09001 * 109.54866 * 299.89258 * 5 2 1 7 7 C 1.53101 * 109.50383 * 60.00429 * 5 2 1 8 8 N 1.47019 * 109.25671 * 176.78050 * 7 5 2 9 9 C 1.46894 * 111.00274 * 177.60788 * 8 7 5 10 10 C 1.52997 * 109.47515 * 169.99909 * 9 8 7 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 C 1.47015 * 110.74910 * 301.38223 * 8 7 5 20 20 C 1.53096 * 109.25920 * 58.61756 * 19 8 7 21 21 O 1.43012 * 109.26103 * 303.14822 * 20 19 8 22 22 H 1.09003 * 109.47229 * 300.00405 * 1 2 3 23 23 H 1.08997 * 109.46914 * 59.99917 * 1 2 3 24 24 H 1.08995 * 109.47371 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47055 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47004 * 300.00237 * 3 2 1 27 27 H 1.09002 * 109.47002 * 60.00038 * 3 2 1 28 28 H 1.09003 * 109.46828 * 299.99870 * 4 2 1 29 29 H 1.08997 * 109.47149 * 60.00238 * 4 2 1 30 30 H 1.08998 * 109.47016 * 180.02562 * 4 2 1 31 31 H 1.08997 * 109.50878 * 56.84470 * 7 5 2 32 32 H 1.08997 * 109.50569 * 296.71361 * 7 5 2 33 33 H 1.09002 * 109.47104 * 49.99641 * 9 8 7 34 34 H 1.08998 * 109.46828 * 290.00473 * 9 8 7 35 35 H 1.09002 * 109.47153 * 59.99762 * 10 9 8 36 36 H 1.09001 * 109.46832 * 299.99953 * 10 9 8 37 37 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 38 38 H 1.09008 * 109.50164 * 178.54980 * 19 8 7 39 39 H 1.09000 * 109.51011 * 298.67804 * 19 8 7 40 40 H 1.09001 * 109.50647 * 183.20912 * 20 19 8 41 41 H 1.09004 * 109.54504 * 63.10841 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0399 -0.7212 1.2493 6 1 1.6788 -0.2071 2.1401 7 6 1.5300 -2.1648 1.2501 8 7 2.0856 -2.8746 2.4115 9 6 1.5752 -4.2502 2.4814 10 6 2.3548 -5.0304 3.5418 11 6 1.8306 -6.4414 3.6139 12 1 1.0226 -6.7510 2.9677 13 6 2.3834 -7.3375 4.5041 14 7 3.3677 -6.9607 5.2906 15 14 1.7342 -9.0868 4.5929 16 1 1.9010 -9.7444 3.2718 17 1 2.4909 -9.8439 5.6222 18 1 0.2944 -9.0627 4.9556 19 6 3.5553 -2.8591 2.3773 20 6 4.0448 -1.4086 2.3652 21 8 3.4701 -0.7260 1.2475 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 3.1300 1.4426 0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.6766 -1.7489 -1.2491 29 1 1.6767 -0.2074 -2.1391 30 1 3.1300 -0.7216 -1.2489 31 1 1.8462 -2.6630 0.3336 32 1 0.4417 -2.1663 1.3091 33 1 1.6978 -4.7330 1.5118 34 1 0.5182 -4.2325 2.7472 35 1 2.2321 -4.5476 4.5114 36 1 3.4117 -5.0481 3.2759 37 1 3.7564 -7.5910 5.9172 38 1 3.9452 -3.3675 3.2592 39 1 3.9039 -3.3685 1.4789 40 1 5.1316 -1.3919 2.2823 41 1 3.7427 -0.9140 3.2884 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577503619.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:33 Heat of formation + Delta-G solvation = -79.995302 kcal Electronic energy + Delta-G solvation = -18357.435019 eV Core-core repulsion = 15656.859337 eV Total energy + Delta-G solvation = -2700.575682 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.07088 -37.97063 -36.77761 -35.03475 -31.89787 -31.29499 -28.55465 -28.17306 -27.69782 -25.74621 -24.92614 -22.75747 -21.15862 -19.76572 -18.68236 -17.24965 -17.12910 -16.60079 -16.25498 -16.07053 -15.83941 -15.08073 -14.78860 -14.53736 -14.49484 -14.09917 -14.03190 -13.33271 -13.13523 -13.01533 -12.82782 -12.67447 -12.60701 -12.49682 -12.21945 -12.02905 -11.90527 -11.71103 -11.55705 -11.43079 -11.26381 -11.05771 -10.56974 -10.48315 -9.30176 -8.22454 -6.33964 1.39236 1.42247 1.50247 2.38524 2.74952 2.93033 3.11055 3.72490 3.84617 4.03731 4.07012 4.14854 4.16586 4.30867 4.33866 4.52338 4.57256 4.61667 4.65555 4.80134 4.81397 4.87670 4.91334 4.94345 4.97367 5.01468 5.08139 5.11379 5.20886 5.33191 5.40257 5.50258 5.54420 5.59184 5.73407 5.97459 6.12477 6.23936 6.27233 6.81406 7.35140 8.89336 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.044702 B = 0.004845 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.217915 B = 5777.762211 C = 6146.092886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.058 4.058 3 C -0.132 4.132 4 C -0.138 4.138 5 C 0.106 3.894 6 H 0.060 0.940 7 C 0.023 3.977 8 N -0.547 5.547 9 C 0.078 3.922 10 C 0.031 3.969 11 C -0.548 4.548 12 H 0.059 0.941 13 C 0.004 3.996 14 N -0.930 5.930 15 Si 0.966 3.034 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.266 1.266 19 C 0.018 3.982 20 C 0.072 3.928 21 O -0.386 6.386 22 H 0.061 0.939 23 H 0.077 0.923 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.036 0.964 32 H 0.090 0.910 33 H 0.018 0.982 34 H 0.066 0.934 35 H -0.005 1.005 36 H 0.001 0.999 37 H 0.265 0.735 38 H 0.075 0.925 39 H 0.025 0.975 40 H 0.115 0.885 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.298 15.047 -11.020 18.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.058 4.058 3 C -0.189 4.189 4 C -0.195 4.195 5 C 0.048 3.952 6 H 0.078 0.922 7 C -0.105 4.105 8 N -0.272 5.272 9 C -0.050 4.050 10 C -0.006 4.006 11 C -0.586 4.586 12 H 0.077 0.923 13 C -0.194 4.194 14 N -0.570 5.570 15 Si 0.790 3.210 16 H -0.193 1.193 17 H -0.207 1.207 18 H -0.191 1.191 19 C -0.110 4.110 20 C -0.005 4.005 21 O -0.304 6.304 22 H 0.080 0.920 23 H 0.096 0.904 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.109 0.891 33 H 0.036 0.964 34 H 0.084 0.916 35 H 0.013 0.987 36 H 0.019 0.981 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.044 0.956 40 H 0.133 0.867 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.229 15.328 -10.610 18.919 hybrid contribution 0.131 -1.841 0.000 1.846 sum -3.098 13.486 -10.610 17.437 Atomic orbital electron populations 1.21916 0.92560 1.02334 1.03085 1.20570 0.96292 0.96050 0.92928 1.21754 1.01119 0.93829 1.02229 1.21845 1.01003 0.99752 0.96892 1.22241 0.80685 0.93464 0.98763 0.92228 1.22979 1.00887 0.95431 0.91219 1.62320 1.07084 1.16448 1.41305 1.22017 0.99197 0.86238 0.97507 1.19035 0.94572 0.93636 0.93336 1.21570 1.18900 0.97200 1.20976 0.92297 1.25936 0.95076 1.03503 0.94901 1.70085 1.26061 1.37101 1.23706 0.85489 0.78691 0.78680 0.78111 1.19261 1.20678 1.19117 1.22793 0.88731 0.98681 1.00830 1.22679 0.98954 0.89355 0.89492 1.87903 1.20083 1.76012 1.46451 0.91970 0.90441 0.92649 0.92981 0.91141 0.92543 0.93479 0.91070 0.93229 0.94577 0.89127 0.96412 0.91554 0.98680 0.98116 0.92669 0.90693 0.95631 0.86674 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.12 71.98 0.58 -1.85 16 2 C -0.06 -1.19 0.63 -52.18 -0.03 -1.22 16 3 C -0.13 -2.39 8.33 71.98 0.60 -1.79 16 4 C -0.14 -2.87 7.98 71.98 0.57 -2.30 16 5 C 0.11 2.83 2.07 30.63 0.06 2.90 16 6 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 7 C 0.02 0.70 4.19 86.31 0.36 1.06 16 8 N -0.55 -20.81 4.88 -895.21 -4.37 -25.18 16 9 C 0.08 3.42 5.22 86.30 0.45 3.87 16 10 C 0.03 1.70 4.24 29.85 0.13 1.82 16 11 C -0.55 -31.61 9.11 25.60 0.23 -31.38 16 12 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 13 C 0.00 0.24 5.46 84.66 0.46 0.70 16 14 N -0.93 -56.71 13.29 21.45 0.28 -56.42 16 15 Si 0.97 44.37 29.54 68.60 2.03 46.40 16 16 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 19 C 0.02 0.67 4.94 86.31 0.43 1.09 16 20 C 0.07 2.13 7.01 72.01 0.50 2.63 16 21 O -0.39 -11.23 9.12 -148.98 -1.36 -12.59 16 22 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.05 1.01 6.51 -2.39 -0.02 1.00 16 25 H 0.05 1.06 7.69 -2.39 -0.02 1.05 16 26 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.05 1.06 6.36 -2.39 -0.02 1.04 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.05 1.16 7.68 -2.39 -0.02 1.14 16 31 H 0.04 1.15 6.27 -2.39 -0.01 1.14 16 32 H 0.09 2.57 6.62 -2.39 -0.02 2.55 16 33 H 0.02 0.78 8.08 -2.39 -0.02 0.76 16 34 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 35 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 36 H 0.00 0.03 6.28 -2.39 -0.01 0.02 16 37 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 38 H 0.07 3.14 6.05 -2.38 -0.01 3.13 16 39 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 41 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 Total: -1.00 -63.99 312.58 1.91 -62.08 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.97 Total: 10.18 kcal Atomic # 6 Polarization: -28.82 SS G_CDS: 4.35 Total: -24.46 kcal Atomic # 7 Polarization: -77.52 SS G_CDS: -4.08 Total: -81.60 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -1.36 Total: -12.59 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -63.99 1.91 -62.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577503619.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.917 kcal (2) G-P(sol) polarization free energy of solvation -63.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds