Wall clock time and date at job start Sun Mar 29 2020 22:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 6 6 H 1.09002 * 109.50692 * 299.91743 * 5 2 1 7 7 C 1.53095 * 109.50951 * 179.78367 * 5 2 1 8 8 N 1.47016 * 109.25720 * 183.21945 * 7 5 2 9 9 C 1.46902 * 111.00134 * 182.39230 * 8 7 5 10 10 C 1.52997 * 109.47039 * 302.41302 * 9 8 7 11 11 C 1.50702 * 109.47438 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99437 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00389 * 179.97438 * 11 10 9 14 14 N 1.31509 * 119.99804 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00140 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47223 * 90.00030 * 15 13 11 17 17 H 1.48500 * 109.47234 * 210.00464 * 15 13 11 18 18 H 1.48505 * 109.47039 * 330.00201 * 15 13 11 19 19 C 1.47015 * 110.75688 * 58.61678 * 8 7 5 20 20 C 1.53100 * 109.25464 * 301.38325 * 19 8 7 21 21 O 1.43019 * 109.25956 * 56.84984 * 20 19 8 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 26 26 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 28 28 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 29 29 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 30 30 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 31 31 H 1.09000 * 109.50777 * 303.14882 * 7 5 2 32 32 H 1.09000 * 109.50824 * 63.28321 * 7 5 2 33 33 H 1.09005 * 109.47055 * 62.40645 * 9 8 7 34 34 H 1.08994 * 109.47603 * 182.40961 * 9 8 7 35 35 H 1.09006 * 109.47113 * 299.99303 * 10 9 8 36 36 H 1.08998 * 109.47466 * 60.00114 * 10 9 8 37 37 H 0.97001 * 120.00023 * 180.02562 * 14 13 11 38 38 H 1.08998 * 109.51149 * 181.44795 * 19 8 7 39 39 H 1.09000 * 109.53859 * 61.33447 * 19 8 7 40 40 H 1.08997 * 109.50919 * 296.91383 * 20 19 8 41 41 H 1.08998 * 109.53897 * 176.79862 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0400 -0.7213 -1.2492 6 1 1.6782 -1.7495 -1.2490 7 6 3.5710 -0.7170 -1.2528 8 7 4.0547 -1.3426 -2.4921 9 6 5.5220 -1.4100 -2.5099 10 6 6.0991 -0.0014 -2.3563 11 6 7.6045 -0.0705 -2.3739 12 1 8.1000 -1.0240 -2.4833 13 6 8.3491 1.0832 -2.2503 14 7 7.7457 2.2441 -2.1166 15 14 10.2150 0.9976 -2.2729 16 1 10.6997 1.1301 -3.6703 17 1 10.7712 2.1009 -1.4492 18 1 10.6574 -0.3065 -1.7171 19 6 3.5459 -0.6258 -3.6706 20 6 2.0152 -0.6310 -3.6427 21 8 1.5637 -0.0476 -2.4175 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6768 1.9562 0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 -1.7489 1.2492 29 1 3.1300 -0.7217 1.2490 30 1 1.6767 -0.2075 2.1393 31 1 3.9322 0.3099 -1.1985 32 1 3.9385 -1.2787 -0.3940 33 1 5.8670 -2.0357 -1.6867 34 1 5.8547 -1.8378 -3.4556 35 1 5.7542 0.6243 -3.1795 36 1 5.7666 0.4264 -1.4105 37 1 8.2696 3.0558 -2.0301 38 1 3.8952 -1.1209 -4.5766 39 1 3.9067 0.4026 -3.6555 40 1 1.6533 -1.6568 -3.7125 41 1 1.6333 -0.0523 -4.4837 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577503632.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:35 Heat of formation + Delta-G solvation = -62.519281 kcal Electronic energy + Delta-G solvation = -18697.247308 eV Core-core repulsion = 15997.429443 eV Total energy + Delta-G solvation = -2699.817865 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.78212 -36.61733 -35.48827 -32.87144 -30.07717 -29.68309 -27.34749 -27.09343 -26.27249 -23.76333 -23.61019 -21.59028 -19.28032 -18.67840 -16.50812 -16.01019 -15.77045 -14.99772 -14.70557 -14.55662 -13.93073 -13.70704 -13.56214 -13.42454 -12.96083 -12.41952 -12.28468 -12.07129 -11.90181 -11.55756 -11.44360 -11.21709 -11.02393 -10.92855 -10.83340 -10.67534 -10.48120 -10.42767 -10.05925 -9.80535 -9.71831 -9.19615 -9.14434 -8.37622 -7.53803 -6.03698 -4.06949 3.29288 3.35688 3.38989 3.97784 4.38873 4.48488 4.92651 4.96444 5.15214 5.31427 5.36042 5.43643 5.53488 5.56078 5.64989 5.71359 5.80541 5.86856 5.89204 5.91456 6.09504 6.11428 6.15467 6.22101 6.24435 6.32893 6.37895 6.40304 6.55624 6.62066 6.70199 6.87914 7.42686 7.47167 7.53124 7.65144 7.80166 7.96457 8.38722 8.99943 9.57416 11.07292 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029756 B = 0.006051 C = 0.005571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.749204 B = 4626.448009 C = 5024.869040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.059 4.059 3 C -0.142 4.142 4 C -0.144 4.144 5 C 0.107 3.893 6 H 0.058 0.942 7 C 0.018 3.982 8 N -0.542 5.542 9 C 0.056 3.944 10 C -0.008 4.008 11 C -0.520 4.520 12 H 0.056 0.944 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.892 3.108 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 C 0.014 3.986 20 C 0.067 3.933 21 O -0.380 6.380 22 H 0.062 0.938 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.016 0.984 36 H 0.019 0.981 37 H 0.260 0.740 38 H 0.077 0.923 39 H 0.052 0.948 40 H 0.050 0.950 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.368 -5.000 2.550 14.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.060 4.060 3 C -0.199 4.199 4 C -0.201 4.201 5 C 0.049 3.951 6 H 0.075 0.925 7 C -0.110 4.110 8 N -0.266 5.266 9 C -0.071 4.071 10 C -0.047 4.047 11 C -0.559 4.559 12 H 0.074 0.926 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.114 4.114 20 C -0.010 4.010 21 O -0.299 6.299 22 H 0.081 0.919 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.035 0.965 36 H 0.037 0.963 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.635 -5.147 2.564 14.798 hybrid contribution 1.711 0.676 -0.089 1.842 sum -11.924 -4.471 2.474 12.973 Atomic orbital electron populations 1.21786 0.94309 1.01349 1.01782 1.20515 0.95884 0.96332 0.93259 1.21879 1.01742 0.94683 1.01571 1.21919 1.01830 0.99922 0.96419 1.22133 0.92948 0.94939 0.85111 0.92454 1.22882 0.94507 1.00033 0.93563 1.62632 1.11753 1.50806 1.01359 1.22335 0.83724 0.99929 1.01066 1.19653 0.96108 0.91616 0.97275 1.21150 0.91475 0.93149 1.50143 0.92619 1.25021 0.98633 0.95495 0.95198 1.69966 1.35448 0.97923 1.49977 0.86591 0.85698 0.77709 0.78003 1.20649 1.21213 1.19827 1.22729 0.95143 0.98824 0.94738 1.22612 0.93555 0.98041 0.86771 1.87910 1.72539 1.55856 1.13623 0.91925 0.93000 0.93148 0.93183 0.91937 0.91935 0.92660 0.91834 0.92304 0.92124 0.90331 0.91911 0.91979 0.96539 0.96306 0.92988 0.90419 0.92983 0.93135 0.89125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 8.33 37.16 0.31 -1.25 16 2 C -0.06 -0.78 0.63 -154.51 -0.10 -0.88 16 3 C -0.14 -2.03 7.97 37.15 0.30 -1.73 16 4 C -0.14 -1.69 8.13 37.16 0.30 -1.39 16 5 C 0.11 1.62 2.06 -26.68 -0.06 1.56 16 6 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 7 C 0.02 0.32 3.69 -3.71 -0.01 0.31 16 8 N -0.54 -10.09 4.94 -234.31 -1.16 -11.24 16 9 C 0.06 1.20 5.32 -3.82 -0.02 1.18 16 10 C -0.01 -0.22 4.26 -27.88 -0.12 -0.34 16 11 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 12 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 15 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 C 0.01 0.25 5.33 -3.71 -0.02 0.23 16 20 C 0.07 0.99 7.01 37.21 0.26 1.25 16 21 O -0.38 -6.10 9.13 -35.23 -0.32 -6.42 16 22 H 0.06 0.77 7.68 -51.93 -0.40 0.37 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 1.01 6.36 -51.93 -0.33 0.68 16 27 H 0.06 0.95 7.68 -51.93 -0.40 0.55 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.81 6.51 -51.93 -0.34 0.47 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 1.24 4.53 -51.93 -0.24 1.00 16 32 H 0.08 1.35 6.62 -51.93 -0.34 1.00 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.06 1.30 8.11 -51.93 -0.42 0.88 16 35 H 0.02 0.46 6.61 -51.93 -0.34 0.11 16 36 H 0.02 0.52 6.42 -51.93 -0.33 0.18 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.08 1.26 8.12 -51.93 -0.42 0.84 16 39 H 0.05 1.04 6.59 -51.93 -0.34 0.70 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 310.08 15.07 4.67 4.67 Total: -1.00 -29.96 310.08 -7.91 -37.87 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -7.25 Total: -0.81 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: 0.43 Total: -14.54 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: -0.42 Total: -37.45 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: -0.32 Total: -6.42 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.96 -7.91 -37.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577503632.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.647 kcal (2) G-P(sol) polarization free energy of solvation -29.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds