Wall clock time and date at job start Sun Mar 29 2020 22:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.50699 * 109.47265 * 239.99899 * 2 1 3 5 5 H 1.08003 * 119.99962 * 239.99845 * 4 2 1 6 6 C 1.37874 * 120.00270 * 60.00237 * 4 2 1 7 7 N 1.31522 * 119.99834 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00496 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47325 * 59.99531 * 8 6 4 10 10 H 1.48496 * 109.47425 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47183 * 299.99726 * 8 6 4 12 12 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 13 13 N 1.46902 * 109.46626 * 300.00172 * 12 2 1 14 14 C 1.46905 * 110.99800 * 179.97438 * 13 12 2 15 15 C 1.53000 * 109.47234 * 179.97438 * 14 13 12 16 16 O 1.42894 * 110.01445 * 64.29722 * 15 14 13 17 17 C 1.54266 * 110.03062 * 302.90782 * 15 14 13 18 18 C 1.54960 * 104.15945 * 217.13796 * 17 15 14 19 19 C 1.54893 * 102.77979 * 37.88846 * 18 17 15 20 20 C 1.53870 * 110.02976 * 185.69168 * 15 14 13 21 21 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 22 22 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 23 23 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 26 26 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 27 27 H 0.96992 * 120.00032 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.47050 * 59.99996 * 12 2 1 29 29 H 1.09001 * 109.46801 * 180.02562 * 12 2 1 30 30 H 1.00891 * 111.00138 * 56.04633 * 13 12 2 31 31 H 1.08993 * 109.47004 * 300.00108 * 14 13 12 32 32 H 1.09002 * 109.47091 * 59.99861 * 14 13 12 33 33 H 0.96702 * 114.00413 * 300.70134 * 16 15 14 34 34 H 1.08998 * 110.48955 * 335.78131 * 17 15 14 35 35 H 1.09000 * 110.48710 * 98.42990 * 17 15 14 36 36 H 1.09003 * 110.72315 * 279.57453 * 18 17 15 37 37 H 1.09000 * 110.76680 * 156.22451 * 18 17 15 38 38 H 1.08998 * 110.48440 * 203.40714 * 19 18 17 39 39 H 1.08994 * 110.48242 * 80.76422 * 19 18 17 40 40 H 1.09005 * 110.03083 * 238.56992 * 20 15 14 41 41 H 1.08997 * 110.03654 * 0.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8260 -2.5202 -4.0077 10 1 1.8261 -0.4206 -5.2204 11 1 3.8065 -1.1209 -4.0081 12 6 2.0400 -0.7213 1.2493 13 7 1.5502 -0.0288 2.4487 14 6 2.0207 -0.6952 3.6704 15 6 1.4922 0.0534 4.8956 16 8 0.0660 -0.0242 4.9384 17 6 1.9400 1.5288 4.8471 18 6 2.2371 1.8835 6.3260 19 6 2.8838 0.5840 6.8668 20 6 2.0916 -0.5472 6.1792 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 0.7083 1.1608 -3.4844 28 1 1.6767 -1.7490 1.2492 29 1 3.1300 -0.7209 1.2494 30 1 0.5438 0.0413 2.4401 31 1 1.6570 -1.7225 3.6869 32 1 3.1106 -0.6954 3.6874 33 1 -0.3718 0.3484 4.1608 34 1 2.8399 1.6347 4.2414 35 1 1.1399 2.1577 4.4566 36 1 1.3147 2.1078 6.8618 37 1 2.9352 2.7182 6.3905 38 1 2.7723 0.5244 7.9494 39 1 3.9363 0.5370 6.5875 40 1 1.2945 -0.8970 6.8353 41 1 2.7594 -1.3716 5.9293 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581721781.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:26 Heat of formation + Delta-G solvation = -89.798776 kcal Electronic energy + Delta-G solvation = -18364.829003 eV Core-core repulsion = 15663.828211 eV Total energy + Delta-G solvation = -2701.000793 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.39244 -38.35618 -35.86038 -35.15258 -32.82526 -29.86005 -29.32096 -27.50443 -27.24304 -26.02882 -23.98905 -21.70706 -20.77943 -20.26642 -18.11038 -17.56095 -16.99424 -16.58139 -16.44303 -15.78234 -15.35903 -14.82367 -14.39097 -14.27198 -14.15742 -13.73183 -13.49368 -13.17553 -12.98266 -12.71989 -12.60062 -12.51009 -12.35399 -12.10074 -12.06582 -11.97570 -11.89840 -11.55057 -11.40157 -11.31730 -11.00431 -10.64437 -10.60056 -10.33687 -9.21944 -7.96652 -6.13489 1.43400 1.44246 1.50938 2.46396 3.25393 3.27560 3.29796 3.72178 3.87330 3.94256 4.28401 4.43349 4.49919 4.60677 4.62707 4.67722 4.77519 4.86639 4.88300 4.92920 5.02823 5.05628 5.08035 5.17495 5.22486 5.27760 5.29127 5.42560 5.43229 5.52184 5.54062 5.69915 5.77597 6.11778 6.23440 6.33356 6.47880 6.58764 6.80027 6.95472 7.54012 9.01153 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.048275 B = 0.004930 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.866316 B = 5678.651429 C = 5729.545020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.060 3.940 3 C -0.104 4.104 4 C -0.529 4.529 5 H 0.043 0.957 6 C 0.023 3.977 7 N -0.902 5.902 8 Si 0.943 3.057 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.091 3.909 13 N -0.678 5.678 14 C 0.037 3.963 15 C 0.132 3.868 16 O -0.573 6.573 17 C -0.132 4.132 18 C -0.123 4.123 19 C -0.118 4.118 20 C -0.114 4.114 21 H 0.037 0.963 22 H 0.056 0.944 23 H 0.014 0.986 24 H 0.009 0.991 25 H 0.047 0.953 26 H 0.037 0.963 27 H 0.257 0.743 28 H 0.006 0.994 29 H 0.049 0.951 30 H 0.335 0.665 31 H 0.023 0.977 32 H 0.077 0.923 33 H 0.381 0.619 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.738 0.266 15.995 16.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.059 3.941 3 C -0.162 4.162 4 C -0.567 4.567 5 H 0.061 0.939 6 C -0.176 4.176 7 N -0.541 5.541 8 Si 0.770 3.230 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 C -0.038 4.038 13 N -0.311 5.311 14 C -0.092 4.092 15 C 0.092 3.908 16 O -0.381 6.381 17 C -0.170 4.170 18 C -0.160 4.160 19 C -0.156 4.156 20 C -0.151 4.151 21 H 0.055 0.945 22 H 0.074 0.926 23 H 0.034 0.966 24 H 0.028 0.972 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.024 0.976 29 H 0.067 0.933 30 H 0.155 0.845 31 H 0.042 0.958 32 H 0.096 0.904 33 H 0.231 0.769 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.289 0.553 16.422 16.590 hybrid contribution -0.399 -1.095 -1.882 2.214 sum 1.890 -0.542 14.541 14.673 Atomic orbital electron populations 1.21669 0.98083 0.98003 1.00158 1.18145 0.92467 0.92941 0.90553 1.21459 0.97021 0.98254 0.99480 1.21404 1.31352 1.11917 0.92049 0.93894 1.25513 0.95333 0.95630 1.01094 1.69952 1.37286 1.23532 1.23339 0.85851 0.78650 0.78787 0.79699 1.20209 1.21052 1.20160 1.21814 0.98311 0.93777 0.89926 1.60568 1.16031 1.53438 1.01033 1.22726 1.00881 0.95329 0.90307 1.21984 0.80179 0.94812 0.93868 1.86484 1.19139 1.84986 1.47461 1.22830 1.01857 0.95027 0.97254 1.22513 1.00662 0.97888 0.94977 1.22351 0.99357 0.93523 1.00348 1.22162 0.99410 0.98874 0.94703 0.94454 0.92554 0.96639 0.97171 0.93371 0.94449 0.93312 0.97622 0.93276 0.84512 0.95837 0.90412 0.76943 0.91231 0.91753 0.91664 0.90703 0.90212 0.90816 0.90969 0.90377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.59 7.92 71.98 0.57 -5.02 16 2 C 0.06 2.83 0.57 -52.93 -0.03 2.80 16 3 C -0.10 -4.99 8.09 71.98 0.58 -4.41 16 4 C -0.53 -28.44 8.01 25.60 0.21 -28.24 16 5 H 0.04 2.32 7.74 -2.91 -0.02 2.29 16 6 C 0.02 1.27 5.15 84.65 0.44 1.70 16 7 N -0.90 -50.05 9.35 21.45 0.20 -49.85 16 8 Si 0.94 43.24 29.54 68.60 2.03 45.27 16 9 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 C 0.09 3.69 4.59 86.31 0.40 4.09 16 13 N -0.68 -22.33 5.24 -513.86 -2.69 -25.03 16 14 C 0.04 1.05 4.51 86.30 0.39 1.44 16 15 C 0.13 3.24 1.13 -10.07 -0.01 3.23 16 16 O -0.57 -14.95 12.89 -148.98 -1.92 -16.87 16 17 C -0.13 -3.12 5.65 31.69 0.18 -2.94 16 18 C -0.12 -2.36 6.91 31.91 0.22 -2.14 16 19 C -0.12 -2.06 6.83 31.67 0.22 -1.84 16 20 C -0.11 -2.37 6.27 31.32 0.20 -2.17 16 21 H 0.04 1.47 6.57 -2.39 -0.02 1.45 16 22 H 0.06 2.92 6.07 -2.39 -0.01 2.91 16 23 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 25 H 0.05 2.55 6.07 -2.39 -0.01 2.54 16 26 H 0.04 1.61 7.60 -2.39 -0.02 1.59 16 27 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 28 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.05 2.05 8.14 -2.39 -0.02 2.04 16 30 H 0.34 10.66 5.35 -89.70 -0.48 10.18 16 31 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.38 8.69 7.63 -74.06 -0.57 8.12 16 34 H 0.07 1.81 7.85 -2.39 -0.02 1.79 16 35 H 0.06 1.59 8.05 -2.39 -0.02 1.57 16 36 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.07 1.55 7.96 -2.38 -0.02 1.54 16 41 H 0.08 1.51 7.67 -2.39 -0.02 1.49 16 Total: -1.00 -57.09 312.28 0.91 -56.18 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: -0.05 Total: 23.80 kcal Atomic # 6 Polarization: -36.86 SS G_CDS: 3.35 Total: -33.51 kcal Atomic # 7 Polarization: -72.38 SS G_CDS: -2.49 Total: -74.87 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -1.92 Total: -16.87 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -57.09 0.91 -56.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581721781.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.617 kcal (2) G-P(sol) polarization free energy of solvation -57.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds