Wall clock time and date at job start Sun Mar 29 2020 22:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46787 * 2 1 4 4 C 1.52996 * 109.46930 * 120.00206 * 2 1 3 5 5 C 1.53004 * 109.47583 * 65.00268 * 4 2 1 6 6 C 1.52999 * 109.47231 * 180.02562 * 5 4 2 7 7 N 1.46900 * 109.46697 * 180.02562 * 6 5 4 8 8 C 1.48720 * 111.01831 * 74.48907 * 7 6 5 9 9 C 1.54381 * 104.51692 * 158.96284 * 8 7 6 10 10 C 1.54257 * 105.14978 * 336.27274 * 9 8 7 11 11 O 1.42906 * 110.32239 * 240.94794 * 10 9 8 12 12 C 1.50697 * 110.32628 * 118.84329 * 10 9 8 13 13 H 1.07995 * 120.00073 * 241.44522 * 12 10 9 14 14 C 1.37883 * 119.99811 * 61.45328 * 12 10 9 15 15 N 1.31514 * 119.99933 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 119.99722 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47538 * 0.02562 * 16 14 12 18 18 H 1.48510 * 109.46864 * 119.99931 * 16 14 12 19 19 H 1.48499 * 109.47368 * 239.99818 * 16 14 12 20 20 C 1.48567 * 110.99718 * 189.99889 * 7 6 5 21 21 H 1.09000 * 109.46961 * 60.00478 * 1 2 3 22 22 H 1.09006 * 109.46969 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47134 * 299.99676 * 1 2 3 24 24 H 1.08995 * 109.47134 * 240.00324 * 2 1 3 25 25 H 1.08999 * 109.47292 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47471 * 300.00102 * 3 2 1 27 27 H 1.09008 * 109.47286 * 60.00075 * 3 2 1 28 28 H 1.09001 * 109.47611 * 305.00065 * 4 2 1 29 29 H 1.09002 * 109.47084 * 185.00435 * 4 2 1 30 30 H 1.09001 * 109.46812 * 59.99308 * 5 4 2 31 31 H 1.08997 * 109.46710 * 299.99867 * 5 4 2 32 32 H 1.08997 * 109.47422 * 59.99616 * 6 5 4 33 33 H 1.08999 * 109.46632 * 299.99620 * 6 5 4 34 34 H 1.09004 * 110.38960 * 40.24251 * 8 7 6 35 35 H 1.08996 * 110.50963 * 277.74694 * 8 7 6 36 36 H 1.09002 * 110.32526 * 217.32092 * 9 8 7 37 37 H 1.08998 * 110.32190 * 95.21733 * 9 8 7 38 38 H 0.96695 * 113.99929 * 298.55053 * 11 10 9 39 39 H 0.97002 * 119.99478 * 180.02562 * 15 14 12 40 40 H 1.08999 * 110.41133 * 82.17552 * 20 7 6 41 41 H 1.09001 * 110.41003 * 319.73948 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1956 1.1879 6 6 2.1447 -2.9166 2.4375 7 7 1.7567 -4.3322 2.3782 8 6 2.5936 -5.0742 1.3980 9 6 2.4684 -6.5529 1.8233 10 6 2.0906 -6.5118 3.3183 11 8 3.0932 -7.1625 4.1017 12 6 0.7505 -7.1651 3.5378 13 1 -0.0707 -6.5909 3.9405 14 6 0.5728 -8.4961 3.2244 15 7 1.5730 -9.1955 2.7345 16 14 -1.0882 -9.3060 3.4971 17 1 -2.0390 -8.3105 4.0541 18 1 -1.6084 -9.8164 2.2031 19 1 -0.9380 -10.4349 4.4500 20 6 2.0201 -5.0111 3.6732 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 3.1299 1.4426 0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6054 -0.2619 2.1370 29 1 3.1263 -0.6443 1.2952 30 1 2.0699 -2.6550 0.3001 31 1 0.5490 -2.2725 1.1420 32 1 1.7098 -2.4570 3.3250 33 1 3.2310 -2.8397 2.4838 34 1 3.6315 -4.7472 1.4605 35 1 2.2106 -4.9357 0.3869 36 1 3.4195 -7.0678 1.6871 37 1 1.6854 -7.0472 1.2484 38 1 3.2119 -8.0985 3.8899 39 1 1.4478 -10.1317 2.5138 40 1 1.2058 -4.8237 4.3732 41 1 2.9682 -4.6746 4.0929 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592154158.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:41 Heat of formation + Delta-G solvation = -74.756887 kcal Electronic energy + Delta-G solvation = -17965.764882 eV Core-core repulsion = 15265.416354 eV Total energy + Delta-G solvation = -2700.348528 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.45963 -36.97036 -34.86807 -32.06270 -31.88812 -28.89977 -27.84659 -27.25239 -25.38398 -23.86584 -21.61029 -20.06216 -19.92733 -19.26208 -16.96667 -15.69003 -15.17303 -14.82932 -14.55707 -14.42146 -14.02946 -13.66515 -13.34930 -13.06367 -12.41229 -12.24459 -12.14364 -11.96700 -11.64729 -11.62438 -11.30168 -11.08930 -11.01795 -10.75031 -10.64171 -10.51774 -10.43708 -10.36037 -10.16832 -10.15343 -9.83641 -8.97409 -8.52308 -8.06944 -7.74542 -6.11818 -4.16983 3.27882 3.36080 3.41718 4.39311 4.49087 4.80705 4.87307 4.95387 5.16977 5.26841 5.44290 5.50440 5.61695 5.66053 5.69056 5.76177 5.81420 5.85421 5.93900 5.99983 6.04553 6.12191 6.15146 6.20370 6.25183 6.29016 6.41738 6.49278 6.58526 6.60857 6.92857 7.12907 7.28871 7.62590 7.73351 7.80131 7.91952 8.27863 8.85862 9.47629 9.56489 10.95775 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.035215 B = 0.004856 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.915220 B = 5764.600129 C = 6162.911885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.147 4.147 4 C -0.113 4.113 5 C -0.113 4.113 6 C 0.045 3.955 7 N -0.502 5.502 8 C 0.033 3.967 9 C -0.121 4.121 10 C 0.248 3.752 11 O -0.595 6.595 12 C -0.516 4.516 13 H 0.062 0.938 14 C 0.064 3.936 15 N -0.901 5.901 16 Si 0.899 3.101 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.053 3.947 21 H 0.049 0.951 22 H 0.061 0.939 23 H 0.052 0.948 24 H 0.068 0.932 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.065 0.935 36 H 0.049 0.951 37 H 0.074 0.926 38 H 0.382 0.618 39 H 0.264 0.736 40 H 0.075 0.925 41 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.029 14.451 -4.963 15.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.115 4.115 3 C -0.204 4.204 4 C -0.152 4.152 5 C -0.151 4.151 6 C -0.084 4.084 7 N -0.226 5.226 8 C -0.095 4.095 9 C -0.160 4.160 10 C 0.208 3.792 11 O -0.404 6.404 12 C -0.555 4.555 13 H 0.080 0.920 14 C -0.136 4.136 15 N -0.542 5.542 16 Si 0.727 3.273 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.075 4.075 21 H 0.068 0.932 22 H 0.080 0.920 23 H 0.072 0.928 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.232 0.768 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.552 14.867 -4.891 15.660 hybrid contribution -0.030 -1.026 -0.021 1.026 sum 0.522 13.841 -4.913 14.696 Atomic orbital electron populations 1.21897 0.95269 1.02269 1.01244 1.21110 0.96010 0.95784 0.98645 1.21848 1.00778 0.96336 1.01462 1.21629 1.00449 0.95562 0.97511 1.21569 1.02024 0.93592 0.97866 1.22262 0.97413 0.90492 0.98264 1.65312 1.50711 1.00420 1.06163 1.23181 0.93713 0.96330 0.96239 1.22847 1.00699 0.92017 1.00389 1.19275 0.86935 0.87068 0.85941 1.86083 1.60132 1.28808 1.65406 1.21695 0.96561 0.95237 1.41962 0.91951 1.25012 0.97139 0.97290 0.94195 1.69711 1.31142 1.08884 1.44448 0.86424 0.83894 0.79202 0.77782 1.19682 1.21010 1.21032 1.22970 0.98435 0.95351 0.90700 0.93205 0.91970 0.92841 0.91380 0.92902 0.92993 0.92830 0.92091 0.92379 0.92270 0.90959 0.91550 0.95512 0.95523 0.91702 0.93211 0.90686 0.76793 0.92589 0.90648 0.95307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.95 37.16 0.33 -1.13 16 2 C -0.10 -0.96 2.92 -90.62 -0.26 -1.22 16 3 C -0.15 -1.26 9.19 37.16 0.34 -0.91 16 4 C -0.11 -1.25 4.68 -26.73 -0.13 -1.38 16 5 C -0.11 -1.53 5.08 -26.73 -0.14 -1.67 16 6 C 0.04 0.72 4.83 -3.82 -0.02 0.70 16 7 N -0.50 -10.13 5.34 -229.83 -1.23 -11.36 16 8 C 0.03 0.67 5.93 -2.09 -0.01 0.66 16 9 C -0.12 -2.89 5.55 -25.35 -0.14 -3.03 16 10 C 0.25 6.35 1.05 -90.39 -0.10 6.26 16 11 O -0.60 -15.92 12.94 -35.23 -0.46 -16.37 16 12 C -0.52 -14.26 8.10 -34.44 -0.28 -14.53 16 13 H 0.06 1.74 7.53 -52.49 -0.40 1.35 16 14 C 0.06 1.75 5.02 -17.82 -0.09 1.66 16 15 N -0.90 -24.58 10.81 55.43 0.60 -23.98 16 16 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 C 0.05 1.20 5.74 -2.18 -0.01 1.19 16 21 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 22 H 0.06 0.66 6.57 -51.93 -0.34 0.32 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.83 7.47 -51.93 -0.39 0.44 16 31 H 0.07 1.03 6.57 -51.93 -0.34 0.69 16 32 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 33 H 0.03 0.43 7.77 -51.93 -0.40 0.02 16 34 H 0.03 0.51 7.75 -51.93 -0.40 0.11 16 35 H 0.06 1.21 7.86 -51.93 -0.41 0.81 16 36 H 0.05 1.19 7.98 -51.93 -0.41 0.78 16 37 H 0.07 1.95 7.23 -51.93 -0.38 1.58 16 38 H 0.38 10.28 7.32 45.56 0.33 10.61 16 39 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.08 1.71 7.67 -51.93 -0.40 1.31 16 41 H 0.03 0.64 7.94 -51.93 -0.41 0.22 16 LS Contribution 318.18 15.07 4.79 4.79 Total: -1.00 -27.77 318.18 -8.69 -36.46 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -6.88 Total: 7.66 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -0.50 Total: -13.41 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: -0.63 Total: -35.34 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.46 Total: -16.37 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.77 -8.69 -36.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592154158.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.299 kcal (2) G-P(sol) polarization free energy of solvation -27.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds