Wall clock time and date at job start Sun Mar 29 2020 22:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47003 * 2 1 4 4 C 1.52992 * 109.47445 * 119.99852 * 2 1 3 5 5 C 1.53004 * 109.47276 * 65.00187 * 4 2 1 6 6 C 1.53003 * 109.47450 * 180.02562 * 5 4 2 7 7 N 1.46899 * 109.46991 * 179.97438 * 6 5 4 8 8 C 1.48535 * 111.00098 * 307.39388 * 7 6 5 9 9 C 1.55103 * 103.28125 * 200.33413 * 8 7 6 10 10 C 1.54601 * 102.84538 * 37.30582 * 9 8 7 11 11 O 1.42899 * 110.30773 * 97.11731 * 10 9 8 12 12 C 1.50700 * 110.30664 * 219.18372 * 10 9 8 13 13 H 1.07999 * 119.99988 * 117.20955 * 12 10 9 14 14 C 1.37885 * 120.00047 * 297.21135 * 12 10 9 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 10 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47163 * 59.99902 * 16 14 12 18 18 H 1.48495 * 109.47159 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47290 * 299.99897 * 16 14 12 20 20 C 1.47908 * 110.99869 * 189.99556 * 7 6 5 21 21 H 1.08994 * 109.47154 * 59.99946 * 1 2 3 22 22 H 1.09002 * 109.46797 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46462 * 299.99657 * 1 2 3 24 24 H 1.09000 * 109.47006 * 239.99822 * 2 1 3 25 25 H 1.09000 * 109.46859 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.46589 * 300.00408 * 3 2 1 27 27 H 1.09000 * 109.46871 * 59.99947 * 3 2 1 28 28 H 1.09005 * 109.47665 * 305.00305 * 4 2 1 29 29 H 1.09001 * 109.47710 * 184.99840 * 4 2 1 30 30 H 1.08997 * 109.47267 * 59.99711 * 5 4 2 31 31 H 1.09006 * 109.46821 * 299.99778 * 5 4 2 32 32 H 1.08997 * 109.47376 * 59.99465 * 6 5 4 33 33 H 1.08999 * 109.46523 * 299.99881 * 6 5 4 34 34 H 1.08996 * 110.66618 * 318.71599 * 8 7 6 35 35 H 1.08994 * 110.66413 * 81.67735 * 8 7 6 36 36 H 1.09003 * 110.70696 * 278.99712 * 9 8 7 37 37 H 1.09005 * 110.80877 * 155.66092 * 9 8 7 38 38 H 0.96699 * 114.00025 * 62.78843 * 11 10 9 39 39 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 40 40 H 1.09001 * 109.91016 * 26.49117 * 20 7 6 41 41 H 1.08993 * 109.91789 * 265.20266 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6354 -2.1954 1.1880 6 6 2.1449 -2.9166 2.4375 7 7 1.7558 -4.3319 2.3789 8 6 0.2971 -4.4733 2.1372 9 6 -0.0068 -5.9141 2.6246 10 6 0.9102 -6.0593 3.8608 11 8 0.1757 -5.7925 5.0572 12 6 1.5054 -7.4429 3.9110 13 1 2.5749 -7.5736 3.8382 14 6 0.6843 -8.5419 4.0497 15 7 -0.6177 -8.3823 4.1437 16 14 1.4221 -10.2569 4.1125 17 1 2.3503 -10.3544 5.2676 18 1 0.3358 -11.2577 4.2652 19 1 2.1667 -10.5218 2.8553 20 6 2.0183 -5.0075 3.6682 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3632 0.5138 0.8901 24 1 1.8934 -0.5139 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6055 -0.2617 2.1370 29 1 3.1264 -0.6443 1.2951 30 1 2.0700 -2.6550 0.3002 31 1 0.5490 -2.2724 1.1421 32 1 1.7101 -2.4570 3.3250 33 1 3.2312 -2.8396 2.4837 34 1 -0.2624 -3.7443 2.7232 35 1 0.0710 -4.3673 1.0762 36 1 0.2587 -6.6438 1.8596 37 1 -1.0546 -6.0142 2.9077 38 1 -0.5497 -6.4111 5.2196 39 1 -1.1953 -9.1555 4.2409 40 1 1.9868 -4.2817 4.4808 41 1 2.9926 -5.4954 3.6402 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592154159.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:43 Heat of formation + Delta-G solvation = -75.218092 kcal Electronic energy + Delta-G solvation = -18012.374396 eV Core-core repulsion = 15312.005869 eV Total energy + Delta-G solvation = -2700.368527 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.55348 -36.96428 -34.85962 -32.04639 -31.83238 -28.94579 -27.94984 -27.27173 -25.42025 -23.74870 -21.87033 -20.02285 -19.76162 -19.23100 -17.04077 -15.64134 -15.29617 -14.92562 -14.69394 -14.08607 -13.92208 -13.86308 -13.62456 -12.75620 -12.55410 -12.31415 -12.11953 -11.90514 -11.66905 -11.64352 -11.22643 -11.07137 -10.88503 -10.86496 -10.65252 -10.51570 -10.50075 -10.39369 -10.23656 -10.15451 -9.84447 -9.09716 -8.53962 -8.05969 -7.69629 -6.15376 -4.21386 3.28744 3.32797 3.36425 4.35677 4.52694 4.80893 4.84724 4.92257 5.12662 5.29208 5.40188 5.49389 5.58127 5.62449 5.69594 5.78424 5.79860 5.88544 5.90510 5.95689 6.09522 6.11184 6.16334 6.21867 6.24297 6.30626 6.44296 6.50430 6.53795 6.58977 6.98902 7.12146 7.35771 7.57579 7.73008 7.80036 7.90799 8.22000 8.79957 9.45150 9.55900 10.92255 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.052606 B = 0.004483 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.131514 B = 6244.672903 C = 6339.629181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.147 4.147 4 C -0.113 4.113 5 C -0.119 4.119 6 C 0.047 3.953 7 N -0.516 5.516 8 C 0.032 3.968 9 C -0.117 4.117 10 C 0.242 3.758 11 O -0.595 6.595 12 C -0.528 4.528 13 H 0.061 0.939 14 C 0.068 3.932 15 N -0.900 5.900 16 Si 0.900 3.100 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.054 3.946 21 H 0.050 0.950 22 H 0.059 0.941 23 H 0.052 0.948 24 H 0.069 0.931 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.028 0.972 33 H 0.067 0.933 34 H 0.031 0.969 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.382 0.618 39 H 0.266 0.734 40 H 0.034 0.966 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.960 13.535 -6.639 15.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 C -0.204 4.204 4 C -0.151 4.151 5 C -0.157 4.157 6 C -0.082 4.082 7 N -0.240 5.240 8 C -0.095 4.095 9 C -0.156 4.156 10 C 0.202 3.798 11 O -0.405 6.405 12 C -0.567 4.567 13 H 0.079 0.921 14 C -0.134 4.134 15 N -0.540 5.540 16 Si 0.728 3.272 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.073 4.073 21 H 0.069 0.931 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.049 0.951 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.233 0.767 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.535 13.691 -6.980 15.576 hybrid contribution -0.526 -1.038 0.621 1.320 sum 2.009 12.653 -6.359 14.303 Atomic orbital electron populations 1.21897 0.95370 1.02114 1.01306 1.21117 0.95917 0.95859 0.98674 1.21846 1.00821 0.96281 1.01465 1.21625 1.00668 0.95387 0.97452 1.21699 1.01362 0.94037 0.98582 1.22285 1.00243 0.89169 0.96482 1.64832 1.16368 1.11019 1.31777 1.23298 0.88076 0.98932 0.99222 1.22999 1.00264 0.92517 0.99843 1.19365 0.86942 0.91585 0.81873 1.86092 1.50422 1.58781 1.45173 1.21678 0.93828 0.90926 1.50223 0.92072 1.25015 0.94843 0.99516 0.94001 1.69652 1.02822 1.31093 1.50475 0.86521 0.78710 0.83230 0.78739 1.20167 1.21245 1.20103 1.22861 1.00139 0.96103 0.88227 0.93113 0.92173 0.92861 0.91280 0.92832 0.92987 0.92838 0.92231 0.92085 0.91413 0.91654 0.95402 0.91484 0.95067 0.91807 0.91471 0.91782 0.76716 0.92369 0.94738 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.95 37.16 0.33 -1.13 16 2 C -0.10 -0.96 2.92 -90.62 -0.26 -1.22 16 3 C -0.15 -1.25 9.19 37.16 0.34 -0.91 16 4 C -0.11 -1.26 4.68 -26.73 -0.13 -1.38 16 5 C -0.12 -1.61 4.63 -26.73 -0.12 -1.74 16 6 C 0.05 0.77 5.03 -3.82 -0.02 0.75 16 7 N -0.52 -10.36 5.40 -230.35 -1.24 -11.61 16 8 C 0.03 0.65 5.11 -1.81 -0.01 0.64 16 9 C -0.12 -2.80 5.42 -24.78 -0.13 -2.94 16 10 C 0.24 6.21 0.99 -90.42 -0.09 6.12 16 11 O -0.60 -15.93 12.92 -35.23 -0.46 -16.39 16 12 C -0.53 -14.55 8.11 -34.44 -0.28 -14.83 16 13 H 0.06 1.68 7.34 -52.49 -0.39 1.29 16 14 C 0.07 1.83 5.26 -17.82 -0.09 1.73 16 15 N -0.90 -24.45 10.88 55.43 0.60 -23.85 16 16 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 C 0.05 1.23 6.17 -2.76 -0.02 1.22 16 21 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.06 0.63 6.56 -51.93 -0.34 0.29 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.91 5.21 -51.93 -0.27 0.64 16 32 H 0.03 0.47 7.81 -51.93 -0.41 0.06 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.03 0.62 8.00 -51.93 -0.42 0.21 16 35 H 0.06 1.16 7.65 -51.93 -0.40 0.77 16 36 H 0.07 1.70 7.86 -51.93 -0.41 1.29 16 37 H 0.06 1.58 8.02 -51.93 -0.42 1.16 16 38 H 0.38 10.32 7.18 45.56 0.33 10.65 16 39 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 40 H 0.03 0.78 7.39 -51.93 -0.38 0.40 16 41 H 0.08 1.76 7.39 -51.93 -0.38 1.38 16 LS Contribution 316.65 15.07 4.77 4.77 Total: -1.00 -27.60 316.65 -8.67 -36.27 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -6.84 Total: 8.44 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -0.48 Total: -13.68 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: -0.64 Total: -35.45 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.46 Total: -16.39 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.60 -8.67 -36.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592154159.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.949 kcal (2) G-P(sol) polarization free energy of solvation -27.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds