Wall clock time and date at job start Sun Mar 29 2020 22:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46695 * 2 1 4 4 C 1.53005 * 109.46710 * 174.69860 * 3 2 1 5 5 C 1.53001 * 109.47392 * 297.27947 * 4 3 2 6 6 C 1.52995 * 109.47388 * 294.69770 * 3 2 1 7 7 N 1.46901 * 109.47180 * 178.75873 * 6 3 2 8 8 C 1.47905 * 110.99897 * 83.38201 * 7 6 3 9 9 C 1.53986 * 107.22660 * 214.25631 * 8 7 6 10 10 C 1.54596 * 105.14190 * 1.12376 * 9 8 7 11 11 O 1.42896 * 110.72441 * 263.42564 * 10 9 8 12 12 C 1.50703 * 110.72823 * 140.31364 * 10 9 8 13 13 H 1.08000 * 120.00425 * 241.45914 * 12 10 9 14 14 C 1.37879 * 119.99498 * 61.45238 * 12 10 9 15 15 N 1.31518 * 120.00428 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 119.99718 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47377 * 60.00352 * 16 14 12 18 18 H 1.48508 * 109.47168 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47104 * 300.00142 * 16 14 12 20 20 C 1.48811 * 111.18546 * 326.04393 * 7 6 3 21 21 H 1.08997 * 109.46695 * 305.41528 * 1 2 3 22 22 H 1.09004 * 109.46911 * 65.41334 * 1 2 3 23 23 H 1.08994 * 109.46940 * 185.41555 * 1 2 3 24 24 H 1.09000 * 109.46867 * 240.00101 * 2 1 3 25 25 H 1.08994 * 109.46937 * 120.00331 * 2 1 3 26 26 H 1.08993 * 109.47250 * 54.70730 * 3 2 1 27 27 H 1.09005 * 109.46515 * 57.28026 * 4 3 2 28 28 H 1.08996 * 109.47253 * 177.27159 * 4 3 2 29 29 H 1.08997 * 109.46807 * 305.54567 * 5 4 3 30 30 H 1.09006 * 109.47219 * 65.54076 * 5 4 3 31 31 H 1.08996 * 109.47259 * 185.54261 * 5 4 3 32 32 H 1.09002 * 109.46997 * 58.76153 * 6 3 2 33 33 H 1.09004 * 109.47370 * 298.76227 * 6 3 2 34 34 H 1.08996 * 109.92044 * 94.80071 * 8 7 6 35 35 H 1.09006 * 109.91515 * 333.70462 * 8 7 6 36 36 H 1.08999 * 110.31155 * 120.03975 * 9 8 7 37 37 H 1.09000 * 110.30896 * 242.20859 * 9 8 7 38 38 H 0.96697 * 113.99677 * 298.53627 * 11 10 9 39 39 H 0.96991 * 119.99935 * 179.97438 * 15 14 12 40 40 H 1.08999 * 110.51516 * 41.07233 * 20 7 6 41 41 H 1.08990 * 110.70049 * 278.02259 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5642 1.4446 0.1333 5 6 3.9598 0.8240 1.4746 6 6 1.6417 2.1243 -1.3105 7 7 2.1055 3.5181 -1.2980 8 6 3.5224 3.6090 -1.7124 9 6 4.1595 4.7582 -0.9095 10 6 3.0290 5.2900 0.0010 11 8 2.3971 6.4276 -0.5893 12 6 3.5611 5.6283 1.3698 13 1 3.1844 5.1097 2.2390 14 6 4.5290 6.5998 1.5123 15 7 4.9875 7.2316 0.4538 16 14 5.1892 7.0187 3.2087 17 1 5.8031 5.8094 3.8136 18 1 6.2130 8.0881 3.0914 19 1 4.0760 7.4923 4.0701 20 6 2.0503 4.0910 0.0743 21 1 -0.3632 0.5955 0.8375 22 1 -0.3633 0.4276 -0.9345 23 1 -0.3633 -1.0230 0.0970 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 1.6013 1.9830 0.8387 27 1 4.0006 0.8632 -0.6789 28 1 3.9318 2.4696 0.0846 29 1 3.4446 1.3447 2.2818 30 1 3.6792 -0.2293 1.4845 31 1 5.0371 0.9143 1.6132 32 1 0.5570 2.1032 -1.4160 33 1 2.0985 1.5969 -2.1479 34 1 3.5842 3.8227 -2.7794 35 1 4.0348 2.6727 -1.4910 36 1 4.9870 4.3849 -0.3063 37 1 4.5046 5.5436 -1.5819 38 1 2.9896 7.1794 -0.7266 39 1 5.6681 7.9153 0.5541 40 1 2.3915 3.3601 0.8074 41 1 1.0419 4.4313 0.3095 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592523383.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:44 Heat of formation + Delta-G solvation = -50.526932 kcal Electronic energy + Delta-G solvation = -19134.870844 eV Core-core repulsion = 16435.573006 eV Total energy + Delta-G solvation = -2699.297838 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.51513 -36.36024 -33.96797 -32.07156 -31.62837 -30.03156 -28.05328 -26.69440 -24.90584 -23.18997 -22.73015 -20.18265 -19.82765 -18.70164 -17.03957 -15.46298 -15.21027 -14.76211 -14.55659 -14.25707 -13.85234 -13.60951 -13.17190 -12.98594 -12.56272 -12.27845 -11.83220 -11.68336 -11.62977 -11.31246 -11.22937 -10.98846 -10.85838 -10.76749 -10.56847 -10.45292 -10.42189 -10.35243 -10.05284 -9.83629 -9.64739 -9.07991 -8.54163 -8.03016 -7.42806 -6.16497 -4.24615 3.25077 3.30241 3.33024 4.32353 4.78846 4.95354 5.05925 5.11397 5.17387 5.38655 5.50384 5.63373 5.68573 5.72075 5.86053 5.91919 5.95444 6.02243 6.05076 6.09668 6.16643 6.22733 6.28951 6.31134 6.43832 6.49020 6.55550 6.60130 6.68786 6.77297 6.99797 7.12365 7.47529 7.57362 7.65904 7.84230 7.89802 8.25683 8.77801 9.44198 9.62375 10.90385 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027289 B = 0.007788 C = 0.006928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.795329 B = 3594.590811 C = 4040.864128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.125 4.125 4 C -0.139 4.139 5 C -0.149 4.149 6 C 0.049 3.951 7 N -0.512 5.512 8 C 0.018 3.982 9 C -0.128 4.128 10 C 0.256 3.744 11 O -0.581 6.581 12 C -0.536 4.536 13 H 0.059 0.941 14 C 0.071 3.929 15 N -0.894 5.894 16 Si 0.896 3.104 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.276 1.276 20 C 0.039 3.961 21 H 0.053 0.947 22 H 0.056 0.944 23 H 0.047 0.953 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.081 0.919 27 H 0.054 0.946 28 H 0.092 0.908 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.047 0.953 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.376 0.624 39 H 0.266 0.734 40 H 0.065 0.935 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.836 -11.564 -1.175 11.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.145 4.145 4 C -0.176 4.176 5 C -0.206 4.206 6 C -0.080 4.080 7 N -0.235 5.235 8 C -0.110 4.110 9 C -0.167 4.167 10 C 0.216 3.784 11 O -0.389 6.389 12 C -0.574 4.574 13 H 0.077 0.923 14 C -0.131 4.131 15 N -0.534 5.534 16 Si 0.724 3.276 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.087 4.087 21 H 0.072 0.928 22 H 0.075 0.925 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.100 0.900 27 H 0.073 0.927 28 H 0.111 0.889 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.225 0.775 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.572 -11.533 -1.596 12.179 hybrid contribution 1.515 0.107 1.410 2.073 sum -2.056 -11.427 -0.185 11.612 Atomic orbital electron populations 1.21816 0.96193 1.00919 1.02074 1.21564 0.95574 0.96725 1.01543 1.21946 0.96076 0.95929 1.00508 1.22072 0.95386 1.03076 0.97075 1.21783 1.01019 0.99954 0.97857 1.22391 1.00480 0.89403 0.95689 1.65017 1.19386 1.15010 1.24098 1.23274 0.88897 0.99206 0.99580 1.22911 0.99503 0.96078 0.98221 1.19353 0.86374 0.82844 0.89863 1.86148 1.42028 1.26229 1.84475 1.21576 1.21466 1.21108 0.93299 0.92307 1.24987 0.95623 0.95477 0.96994 1.69728 1.29828 1.25138 1.28686 0.86595 0.78636 0.78080 0.84326 1.20219 1.21176 1.20101 1.23537 1.00468 0.96229 0.88514 0.92756 0.92505 0.93355 0.92509 0.92081 0.90037 0.92683 0.88937 0.92659 0.93346 0.93041 0.91207 0.92152 0.92530 0.93477 0.92231 0.91716 0.77537 0.92382 0.91680 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.54 37.16 0.35 -1.32 16 2 C -0.12 -1.38 5.24 -26.73 -0.14 -1.52 16 3 C -0.12 -1.82 1.35 -90.62 -0.12 -1.94 16 4 C -0.14 -2.11 3.40 -26.73 -0.09 -2.21 16 5 C -0.15 -2.06 9.48 37.16 0.35 -1.71 16 6 C 0.05 0.78 5.14 -3.83 -0.02 0.76 16 7 N -0.51 -10.15 5.54 -230.21 -1.28 -11.43 16 8 C 0.02 0.36 5.65 -2.76 -0.02 0.34 16 9 C -0.13 -2.99 4.73 -25.38 -0.12 -3.11 16 10 C 0.26 6.42 0.96 -89.91 -0.09 6.33 16 11 O -0.58 -15.68 13.09 -35.23 -0.46 -16.14 16 12 C -0.54 -14.36 8.14 -34.44 -0.28 -14.64 16 13 H 0.06 1.56 7.78 -52.49 -0.41 1.15 16 14 C 0.07 1.90 5.28 -17.82 -0.09 1.80 16 15 N -0.89 -24.07 11.00 55.43 0.61 -23.46 16 16 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 C 0.04 0.86 4.67 -1.74 -0.01 0.85 16 21 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.06 0.62 6.82 -51.93 -0.35 0.27 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.70 6.37 -51.93 -0.33 0.37 16 26 H 0.08 1.31 6.07 -51.93 -0.32 1.00 16 27 H 0.05 0.78 7.80 -51.93 -0.40 0.38 16 28 H 0.09 1.69 3.58 -51.93 -0.19 1.50 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.58 6.67 -51.93 -0.35 0.23 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.07 6.64 -51.93 -0.34 0.72 16 33 H 0.06 0.90 7.88 -51.93 -0.41 0.49 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.05 0.84 4.57 -51.93 -0.24 0.61 16 36 H 0.06 1.43 7.58 -51.93 -0.39 1.04 16 37 H 0.06 1.60 7.98 -51.93 -0.41 1.19 16 38 H 0.38 10.18 7.46 45.56 0.34 10.52 16 39 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.07 1.35 4.06 -51.93 -0.21 1.14 16 41 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 LS Contribution 300.60 15.07 4.53 4.53 Total: -1.00 -27.21 300.60 -8.00 -35.21 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -6.11 Total: 11.94 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -0.27 Total: -16.35 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: -0.67 Total: -34.89 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.46 Total: -16.14 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.21 -8.00 -35.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592523383.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.318 kcal (2) G-P(sol) polarization free energy of solvation -27.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds