Wall clock time and date at job start Sun Mar 29 2020 22:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46695 * 2 1 4 4 C 1.53005 * 109.46710 * 174.69860 * 3 2 1 5 5 C 1.53001 * 109.47392 * 297.27947 * 4 3 2 6 6 C 1.52995 * 109.47388 * 294.69770 * 3 2 1 7 7 N 1.46901 * 109.47180 * 178.75873 * 6 3 2 8 8 C 1.47905 * 110.99897 * 83.38201 * 7 6 3 9 9 C 1.53986 * 107.22660 * 214.25631 * 8 7 6 10 10 C 1.54596 * 105.14190 * 1.12376 * 9 8 7 11 11 O 1.42896 * 110.72441 * 263.42564 * 10 9 8 12 12 C 1.50703 * 110.72823 * 140.31364 * 10 9 8 13 13 H 1.08000 * 120.00425 * 241.45914 * 12 10 9 14 14 C 1.37879 * 119.99498 * 61.45238 * 12 10 9 15 15 N 1.31518 * 120.00428 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 119.99718 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47377 * 60.00352 * 16 14 12 18 18 H 1.48508 * 109.47168 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47104 * 300.00142 * 16 14 12 20 20 C 1.48811 * 111.18546 * 326.04393 * 7 6 3 21 21 H 1.08997 * 109.46695 * 305.41528 * 1 2 3 22 22 H 1.09004 * 109.46911 * 65.41334 * 1 2 3 23 23 H 1.08994 * 109.46940 * 185.41555 * 1 2 3 24 24 H 1.09000 * 109.46867 * 240.00101 * 2 1 3 25 25 H 1.08994 * 109.46937 * 120.00331 * 2 1 3 26 26 H 1.08993 * 109.47250 * 54.70730 * 3 2 1 27 27 H 1.09005 * 109.46515 * 57.28026 * 4 3 2 28 28 H 1.08996 * 109.47253 * 177.27159 * 4 3 2 29 29 H 1.08997 * 109.46807 * 305.54567 * 5 4 3 30 30 H 1.09006 * 109.47219 * 65.54076 * 5 4 3 31 31 H 1.08996 * 109.47259 * 185.54261 * 5 4 3 32 32 H 1.09002 * 109.46997 * 58.76153 * 6 3 2 33 33 H 1.09004 * 109.47370 * 298.76227 * 6 3 2 34 34 H 1.08996 * 109.92044 * 94.80071 * 8 7 6 35 35 H 1.09006 * 109.91515 * 333.70462 * 8 7 6 36 36 H 1.08999 * 110.31155 * 120.03975 * 9 8 7 37 37 H 1.09000 * 110.30896 * 242.20859 * 9 8 7 38 38 H 0.96697 * 113.99677 * 298.53627 * 11 10 9 39 39 H 0.96991 * 119.99935 * 179.97438 * 15 14 12 40 40 H 1.08999 * 110.51516 * 41.07233 * 20 7 6 41 41 H 1.08990 * 110.70049 * 278.02259 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5642 1.4446 0.1333 5 6 3.9598 0.8240 1.4746 6 6 1.6417 2.1243 -1.3105 7 7 2.1055 3.5181 -1.2980 8 6 3.5224 3.6090 -1.7124 9 6 4.1595 4.7582 -0.9095 10 6 3.0290 5.2900 0.0010 11 8 2.3971 6.4276 -0.5893 12 6 3.5611 5.6283 1.3698 13 1 3.1844 5.1097 2.2390 14 6 4.5290 6.5998 1.5123 15 7 4.9875 7.2316 0.4538 16 14 5.1892 7.0187 3.2087 17 1 5.8031 5.8094 3.8136 18 1 6.2130 8.0881 3.0914 19 1 4.0760 7.4923 4.0701 20 6 2.0503 4.0910 0.0743 21 1 -0.3632 0.5955 0.8375 22 1 -0.3633 0.4276 -0.9345 23 1 -0.3633 -1.0230 0.0970 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 1.6013 1.9830 0.8387 27 1 4.0006 0.8632 -0.6789 28 1 3.9318 2.4696 0.0846 29 1 3.4446 1.3447 2.2818 30 1 3.6792 -0.2293 1.4845 31 1 5.0371 0.9143 1.6132 32 1 0.5570 2.1032 -1.4160 33 1 2.0985 1.5969 -2.1479 34 1 3.5842 3.8227 -2.7794 35 1 4.0348 2.6727 -1.4910 36 1 4.9870 4.3849 -0.3063 37 1 4.5046 5.5436 -1.5819 38 1 2.9896 7.1794 -0.7266 39 1 5.6681 7.9153 0.5541 40 1 2.3915 3.3601 0.8074 41 1 1.0419 4.4313 0.3095 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592523383.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:44 Heat of formation + Delta-G solvation = -69.144990 kcal Electronic energy + Delta-G solvation = -19135.678184 eV Core-core repulsion = 16435.573006 eV Total energy + Delta-G solvation = -2700.105177 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.02596 -37.96948 -35.59959 -34.15015 -32.71646 -31.61621 -29.86745 -28.08180 -26.65421 -24.66628 -23.76253 -21.77605 -21.48951 -20.12807 -19.02472 -17.07539 -16.96622 -16.54112 -16.01357 -15.52599 -15.24504 -15.05890 -14.67304 -14.34655 -13.95159 -13.84207 -13.46818 -13.19848 -13.06749 -12.79768 -12.69436 -12.52896 -12.45761 -12.31365 -12.13550 -12.02955 -11.96267 -11.68080 -11.39755 -11.25962 -11.04486 -11.01140 -10.57154 -10.06798 -8.96136 -8.19491 -6.35106 1.40203 1.41733 1.48989 2.38471 3.05079 3.30845 3.81230 3.95096 3.99488 4.05394 4.20391 4.27955 4.39587 4.44623 4.53193 4.58499 4.65558 4.75500 4.81830 4.87249 4.91077 4.97736 5.03457 5.10559 5.13744 5.16141 5.25761 5.30158 5.33681 5.46967 5.50314 5.51548 5.56438 5.61602 5.80345 5.98856 6.26043 6.40635 6.71030 7.36501 7.50516 8.85768 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027289 B = 0.007788 C = 0.006928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.795329 B = 3594.590811 C = 4040.864128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.109 4.109 3 C -0.118 4.118 4 C -0.139 4.139 5 C -0.146 4.146 6 C 0.049 3.951 7 N -0.524 5.524 8 C 0.027 3.973 9 C -0.116 4.116 10 C 0.237 3.763 11 O -0.593 6.593 12 C -0.558 4.558 13 H 0.053 0.947 14 C 0.030 3.970 15 N -0.912 5.912 16 Si 0.955 3.045 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.275 1.275 20 C 0.052 3.948 21 H 0.045 0.955 22 H 0.055 0.945 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.044 0.956 37 H 0.041 0.959 38 H 0.370 0.630 39 H 0.268 0.732 40 H 0.075 0.925 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.918 -13.569 -1.008 13.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.138 4.138 4 C -0.176 4.176 5 C -0.203 4.203 6 C -0.079 4.079 7 N -0.248 5.248 8 C -0.100 4.100 9 C -0.155 4.155 10 C 0.197 3.803 11 O -0.401 6.401 12 C -0.597 4.597 13 H 0.071 0.929 14 C -0.170 4.170 15 N -0.551 5.551 16 Si 0.780 3.220 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.201 1.201 20 C -0.075 4.075 21 H 0.064 0.936 22 H 0.074 0.926 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.218 0.782 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.662 -13.555 -1.433 14.114 hybrid contribution 1.523 0.729 1.338 2.154 sum -2.139 -12.826 -0.095 13.004 Atomic orbital electron populations 1.21811 0.95534 1.01910 1.01705 1.21512 0.96098 0.94563 1.02533 1.21833 0.95572 0.97561 0.98817 1.22014 0.95804 1.01368 0.98426 1.21757 1.00825 1.01134 0.96605 1.22498 1.01026 0.87301 0.97105 1.64948 1.19273 1.17933 1.22597 1.23187 0.88953 0.98718 0.99143 1.22668 0.98663 0.96606 0.97599 1.19657 0.87931 0.83152 0.89544 1.86141 1.42459 1.26732 1.84719 1.21829 1.22101 1.21738 0.94011 0.92878 1.25673 0.95748 0.95307 1.00297 1.69822 1.29910 1.25207 1.30180 0.85667 0.77988 0.78000 0.80297 1.19556 1.20622 1.20081 1.23338 0.98672 0.95300 0.90197 0.93583 0.92574 0.91606 0.91243 0.91298 0.91965 0.91224 0.92282 0.93862 0.90962 0.93155 0.90396 0.90454 0.91890 0.91206 0.93742 0.94011 0.78215 0.92291 0.90729 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.54 71.98 0.69 -2.23 16 2 C -0.11 -2.24 5.24 30.60 0.16 -2.08 16 3 C -0.12 -3.20 1.35 -10.79 -0.01 -3.21 16 4 C -0.14 -3.96 3.40 30.60 0.10 -3.86 16 5 C -0.15 -3.77 9.48 71.98 0.68 -3.08 16 6 C 0.05 1.44 5.14 86.30 0.44 1.88 16 7 N -0.52 -20.32 5.54 -882.25 -4.89 -25.21 16 8 C 0.03 1.06 5.65 86.44 0.49 1.55 16 9 C -0.12 -5.52 4.73 31.47 0.15 -5.37 16 10 C 0.24 12.13 0.96 -10.33 -0.01 12.12 16 11 O -0.59 -32.88 13.09 -148.98 -1.95 -34.83 16 12 C -0.56 -30.47 8.14 25.60 0.21 -30.26 16 13 H 0.05 2.87 7.78 -2.91 -0.02 2.85 16 14 C 0.03 1.63 5.28 84.65 0.45 2.07 16 15 N -0.91 -49.85 11.00 21.45 0.24 -49.62 16 16 Si 0.95 42.62 29.54 68.60 2.03 44.65 16 17 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 18 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 19 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 20 C 0.05 2.30 4.67 86.60 0.40 2.70 16 21 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 22 H 0.06 1.08 6.82 -2.38 -0.02 1.06 16 23 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.07 1.33 6.37 -2.39 -0.02 1.32 16 26 H 0.06 1.94 6.07 -2.39 -0.01 1.92 16 27 H 0.07 1.77 7.80 -2.38 -0.02 1.75 16 28 H 0.06 2.10 3.58 -2.39 -0.01 2.09 16 29 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.51 6.67 -2.38 -0.02 1.49 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.08 2.20 6.64 -2.39 -0.02 2.18 16 33 H 0.08 2.05 7.88 -2.39 -0.02 2.03 16 34 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.07 2.39 4.57 -2.38 -0.01 2.38 16 36 H 0.04 2.19 7.58 -2.39 -0.02 2.17 16 37 H 0.04 2.12 7.98 -2.39 -0.02 2.10 16 38 H 0.37 20.77 7.46 -74.06 -0.55 20.22 16 39 H 0.27 13.98 8.31 -92.72 -0.77 13.21 16 40 H 0.08 3.12 4.06 -2.39 -0.01 3.11 16 41 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -58.16 300.60 -0.37 -58.54 By element: Atomic # 1 Polarization: 35.78 SS G_CDS: 0.46 Total: 36.24 kcal Atomic # 6 Polarization: -33.51 SS G_CDS: 3.75 Total: -29.76 kcal Atomic # 7 Polarization: -70.18 SS G_CDS: -4.65 Total: -74.83 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -1.95 Total: -34.83 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -58.16 -0.37 -58.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592523383.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.608 kcal (2) G-P(sol) polarization free energy of solvation -58.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds