Wall clock time and date at job start Sun Mar 29 2020 22:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46851 * 2 1 4 4 C 1.53002 * 109.47360 * 299.47072 * 3 2 1 5 5 C 1.52995 * 109.47279 * 294.95983 * 4 3 2 6 6 C 1.53004 * 109.47384 * 59.47104 * 3 2 1 7 7 N 1.46907 * 109.46989 * 77.22389 * 6 3 2 8 8 C 1.48558 * 110.99925 * 282.57330 * 7 6 3 9 9 C 1.54379 * 104.59414 * 200.95764 * 8 7 6 10 10 C 1.54252 * 105.06062 * 23.85502 * 9 8 7 11 11 O 1.42903 * 110.32983 * 118.99560 * 10 9 8 12 12 C 1.50703 * 110.32602 * 241.10192 * 10 9 8 13 13 H 1.07999 * 119.99613 * 117.16557 * 12 10 9 14 14 C 1.37867 * 119.99964 * 296.89877 * 12 10 9 15 15 N 1.31517 * 120.00189 * 0.27087 * 14 12 10 16 16 Si 1.86807 * 120.00218 * 180.27340 * 14 12 10 17 17 H 1.48497 * 109.46769 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.46982 * 119.99716 * 16 14 12 19 19 H 1.48500 * 109.46902 * 239.99861 * 16 14 12 20 20 C 1.48821 * 110.96986 * 167.15283 * 7 6 3 21 21 H 1.09002 * 109.46718 * 184.58022 * 1 2 3 22 22 H 1.09000 * 109.46864 * 304.57210 * 1 2 3 23 23 H 1.08992 * 109.47159 * 64.57510 * 1 2 3 24 24 H 1.08996 * 109.47173 * 240.00420 * 2 1 3 25 25 H 1.09004 * 109.47557 * 120.00128 * 2 1 3 26 26 H 1.09006 * 109.47024 * 179.46967 * 3 2 1 27 27 H 1.09000 * 109.47056 * 54.96020 * 4 3 2 28 28 H 1.09001 * 109.47279 * 174.96092 * 4 3 2 29 29 H 1.08996 * 109.47326 * 185.50433 * 5 4 3 30 30 H 1.08997 * 109.47293 * 305.50723 * 5 4 3 31 31 H 1.09005 * 109.47203 * 65.50158 * 5 4 3 32 32 H 1.08995 * 109.46924 * 317.23029 * 6 3 2 33 33 H 1.08991 * 109.47423 * 197.22450 * 6 3 2 34 34 H 1.08999 * 110.41407 * 82.18117 * 8 7 6 35 35 H 1.09007 * 110.41583 * 319.73951 * 8 7 6 36 36 H 1.09000 * 110.32916 * 264.95401 * 9 8 7 37 37 H 1.09008 * 110.40641 * 142.79474 * 9 8 7 38 38 H 0.96703 * 113.99668 * 62.82636 * 11 10 9 39 39 H 0.97004 * 120.00131 * 180.02562 * 15 14 12 40 40 H 1.08997 * 110.45237 * 40.33007 * 20 7 6 41 41 H 1.08995 * 110.49776 * 277.79779 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5408 2.1600 -1.2558 5 6 2.1625 1.5119 -2.4945 6 6 1.5191 2.1677 1.2425 7 7 2.3042 1.7570 2.4143 8 6 1.8861 0.4135 2.8910 9 6 2.3645 0.3549 4.3577 10 6 2.4677 1.8276 4.8048 11 8 1.5834 2.0773 5.8992 12 6 3.8857 2.1588 5.1928 13 1 4.4370 2.9043 4.6388 14 6 4.4773 1.5142 6.2582 15 7 3.8060 0.6064 6.9327 16 14 6.2325 1.9302 6.7440 17 1 6.7635 2.9759 5.8331 18 1 6.2535 2.4328 8.1411 19 1 7.0758 0.7120 6.6434 20 6 2.0420 2.6543 3.5723 21 1 -0.3633 -1.0244 0.0821 22 1 -0.3633 0.5832 0.8462 23 1 -0.3633 0.4412 -0.9281 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.1299 1.4426 0.0095 27 1 0.4550 2.0822 -1.3114 28 1 1.8282 3.2105 -1.2126 29 1 1.8853 2.0824 -3.3809 30 1 3.2477 1.5020 -2.3935 31 1 1.7974 0.4894 -2.5916 32 1 0.4712 1.9122 1.3997 33 1 1.6134 3.2443 1.1012 34 1 2.3692 -0.3662 2.3022 35 1 0.8019 0.3125 2.8405 36 1 3.3395 -0.1285 4.4189 37 1 1.6393 -0.1777 4.9730 38 1 1.7892 1.5681 6.6952 39 1 4.2222 0.1531 7.6825 40 1 0.9823 2.9031 3.6290 41 1 2.6427 3.5606 3.4965 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592523384.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:46 Heat of formation + Delta-G solvation = -60.168887 kcal Electronic energy + Delta-G solvation = -18636.998864 eV Core-core repulsion = 15937.282919 eV Total energy + Delta-G solvation = -2699.715944 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.92918 -36.89454 -34.30472 -32.02524 -31.19753 -30.13718 -27.89416 -27.01197 -24.54394 -23.95945 -22.50233 -20.29583 -19.37093 -18.75548 -16.98968 -15.95608 -15.00425 -14.86368 -14.79519 -14.45949 -13.76515 -13.40993 -13.08937 -12.93837 -12.71873 -12.29416 -12.16146 -11.88136 -11.62002 -11.41854 -11.27149 -11.10511 -10.83289 -10.76607 -10.65528 -10.41515 -10.34589 -10.25948 -10.12195 -9.81390 -9.75782 -8.95370 -8.51960 -8.04748 -7.69346 -6.11961 -4.16962 3.27743 3.35988 3.41590 4.39275 4.54770 4.96108 5.05163 5.12026 5.18759 5.34407 5.40607 5.49694 5.64663 5.74776 5.81678 5.84281 5.89786 5.95169 6.00900 6.03614 6.15094 6.16513 6.20682 6.25085 6.35400 6.41803 6.45562 6.53702 6.67036 6.75700 6.93358 7.13735 7.29653 7.62907 7.74112 7.81693 7.92568 8.27676 8.85859 9.48581 9.58215 10.95711 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.033627 B = 0.006042 C = 0.005691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.468929 B = 4633.482565 C = 4918.493925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.135 4.135 3 C -0.081 4.081 4 C -0.120 4.120 5 C -0.150 4.150 6 C 0.043 3.957 7 N -0.499 5.499 8 C 0.031 3.969 9 C -0.123 4.123 10 C 0.248 3.752 11 O -0.596 6.596 12 C -0.515 4.515 13 H 0.062 0.938 14 C 0.064 3.936 15 N -0.902 5.902 16 Si 0.899 3.101 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.052 3.948 21 H 0.047 0.953 22 H 0.057 0.943 23 H 0.051 0.949 24 H 0.057 0.943 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.037 0.963 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.028 0.972 36 H 0.073 0.927 37 H 0.049 0.951 38 H 0.383 0.617 39 H 0.264 0.736 40 H 0.028 0.972 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.773 -0.818 -12.874 13.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.172 4.172 3 C -0.100 4.100 4 C -0.158 4.158 5 C -0.207 4.207 6 C -0.086 4.086 7 N -0.223 5.223 8 C -0.096 4.096 9 C -0.162 4.162 10 C 0.208 3.792 11 O -0.405 6.405 12 C -0.554 4.554 13 H 0.081 0.919 14 C -0.136 4.136 15 N -0.543 5.543 16 Si 0.727 3.273 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.075 4.075 21 H 0.067 0.933 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.046 0.954 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.234 0.766 39 H 0.074 0.926 40 H 0.047 0.953 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.466 -0.508 -13.325 14.063 hybrid contribution 0.349 -0.296 0.918 1.026 sum -4.117 -0.804 -12.407 13.097 Atomic orbital electron populations 1.21921 0.96631 1.01105 1.01620 1.21900 0.95663 0.97025 1.02599 1.21136 1.01166 0.94518 0.93145 1.21595 1.00431 0.99372 0.94402 1.21782 1.00977 1.00632 0.97349 1.22444 0.95376 0.99175 0.91592 1.65388 1.50615 1.02596 1.03699 1.23365 0.96655 0.91826 0.97797 1.22879 1.00887 1.00538 0.91859 1.19269 0.88209 0.88772 0.82925 1.86076 1.57527 1.71083 1.25861 1.21704 0.97759 1.22003 1.13924 0.91948 1.25007 0.98229 0.94349 0.96041 1.69673 1.37522 1.26127 1.21002 0.86426 0.84350 0.78297 0.78249 1.19696 1.21036 1.21016 1.23027 0.97612 0.96453 0.90442 0.93344 0.92364 0.92983 0.92464 0.90309 0.90207 0.92051 0.92264 0.93328 0.92733 0.92748 0.94527 0.91713 0.90980 0.95409 0.90845 0.93252 0.76638 0.92564 0.95329 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.25 37.16 0.34 -1.49 16 2 C -0.13 -1.73 5.06 -26.73 -0.14 -1.86 16 3 C -0.08 -1.09 2.27 -90.62 -0.21 -1.30 16 4 C -0.12 -1.35 5.16 -26.73 -0.14 -1.48 16 5 C -0.15 -1.49 9.53 37.15 0.35 -1.13 16 6 C 0.04 0.68 4.49 -3.82 -0.02 0.66 16 7 N -0.50 -9.86 5.32 -229.74 -1.22 -11.08 16 8 C 0.03 0.61 5.10 -2.18 -0.01 0.60 16 9 C -0.12 -2.91 5.61 -25.35 -0.14 -3.05 16 10 C 0.25 6.32 1.05 -90.39 -0.10 6.22 16 11 O -0.60 -15.93 12.94 -35.23 -0.46 -16.39 16 12 C -0.52 -14.17 8.07 -34.44 -0.28 -14.45 16 13 H 0.06 1.74 7.54 -52.49 -0.40 1.34 16 14 C 0.06 1.74 5.04 -17.82 -0.09 1.65 16 15 N -0.90 -24.59 10.83 55.43 0.60 -23.99 16 16 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 C 0.05 1.17 5.73 -2.03 -0.01 1.16 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.06 0.75 5.60 -51.93 -0.29 0.46 16 23 H 0.05 0.55 6.58 -51.93 -0.34 0.21 16 24 H 0.06 0.66 6.67 -51.93 -0.35 0.32 16 25 H 0.08 1.14 4.44 -51.93 -0.23 0.91 16 26 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.06 0.66 6.29 -51.93 -0.33 0.33 16 28 H 0.06 0.66 8.05 -51.93 -0.42 0.24 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.52 6.83 -51.93 -0.35 0.17 16 32 H 0.04 0.58 5.17 -51.93 -0.27 0.31 16 33 H 0.06 1.01 7.86 -51.93 -0.41 0.60 16 34 H 0.07 1.32 5.68 -51.93 -0.30 1.02 16 35 H 0.03 0.52 7.43 -51.93 -0.39 0.14 16 36 H 0.07 1.89 7.34 -51.93 -0.38 1.51 16 37 H 0.05 1.18 7.98 -51.92 -0.41 0.76 16 38 H 0.38 10.35 7.17 45.56 0.33 10.67 16 39 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.03 0.63 7.94 -51.93 -0.41 0.21 16 41 H 0.07 1.70 7.68 -51.93 -0.40 1.30 16 LS Contribution 303.44 15.07 4.57 4.57 Total: -1.00 -27.52 303.44 -8.12 -35.64 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -6.17 Total: 9.52 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -0.43 Total: -14.48 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: -0.62 Total: -35.07 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.46 Total: -16.39 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.52 -8.12 -35.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592523384.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.525 kcal (2) G-P(sol) polarization free energy of solvation -27.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds