Wall clock time and date at job start Sun Mar 29 2020 22:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46851 * 2 1 4 4 C 1.53002 * 109.47360 * 299.47072 * 3 2 1 5 5 C 1.52995 * 109.47279 * 294.95983 * 4 3 2 6 6 C 1.53004 * 109.47384 * 59.47104 * 3 2 1 7 7 N 1.46907 * 109.46989 * 77.22389 * 6 3 2 8 8 C 1.48558 * 110.99925 * 282.57330 * 7 6 3 9 9 C 1.54379 * 104.59414 * 200.95764 * 8 7 6 10 10 C 1.54252 * 105.06062 * 23.85502 * 9 8 7 11 11 O 1.42903 * 110.32983 * 118.99560 * 10 9 8 12 12 C 1.50703 * 110.32602 * 241.10192 * 10 9 8 13 13 H 1.07999 * 119.99613 * 117.16557 * 12 10 9 14 14 C 1.37867 * 119.99964 * 296.89877 * 12 10 9 15 15 N 1.31517 * 120.00189 * 0.27087 * 14 12 10 16 16 Si 1.86807 * 120.00218 * 180.27340 * 14 12 10 17 17 H 1.48497 * 109.46769 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.46982 * 119.99716 * 16 14 12 19 19 H 1.48500 * 109.46902 * 239.99861 * 16 14 12 20 20 C 1.48821 * 110.96986 * 167.15283 * 7 6 3 21 21 H 1.09002 * 109.46718 * 184.58022 * 1 2 3 22 22 H 1.09000 * 109.46864 * 304.57210 * 1 2 3 23 23 H 1.08992 * 109.47159 * 64.57510 * 1 2 3 24 24 H 1.08996 * 109.47173 * 240.00420 * 2 1 3 25 25 H 1.09004 * 109.47557 * 120.00128 * 2 1 3 26 26 H 1.09006 * 109.47024 * 179.46967 * 3 2 1 27 27 H 1.09000 * 109.47056 * 54.96020 * 4 3 2 28 28 H 1.09001 * 109.47279 * 174.96092 * 4 3 2 29 29 H 1.08996 * 109.47326 * 185.50433 * 5 4 3 30 30 H 1.08997 * 109.47293 * 305.50723 * 5 4 3 31 31 H 1.09005 * 109.47203 * 65.50158 * 5 4 3 32 32 H 1.08995 * 109.46924 * 317.23029 * 6 3 2 33 33 H 1.08991 * 109.47423 * 197.22450 * 6 3 2 34 34 H 1.08999 * 110.41407 * 82.18117 * 8 7 6 35 35 H 1.09007 * 110.41583 * 319.73951 * 8 7 6 36 36 H 1.09000 * 110.32916 * 264.95401 * 9 8 7 37 37 H 1.09008 * 110.40641 * 142.79474 * 9 8 7 38 38 H 0.96703 * 113.99668 * 62.82636 * 11 10 9 39 39 H 0.97004 * 120.00131 * 180.02562 * 15 14 12 40 40 H 1.08997 * 110.45237 * 40.33007 * 20 7 6 41 41 H 1.08995 * 110.49776 * 277.79779 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5408 2.1600 -1.2558 5 6 2.1625 1.5119 -2.4945 6 6 1.5191 2.1677 1.2425 7 7 2.3042 1.7570 2.4143 8 6 1.8861 0.4135 2.8910 9 6 2.3645 0.3549 4.3577 10 6 2.4677 1.8276 4.8048 11 8 1.5834 2.0773 5.8992 12 6 3.8857 2.1588 5.1928 13 1 4.4370 2.9043 4.6388 14 6 4.4773 1.5142 6.2582 15 7 3.8060 0.6064 6.9327 16 14 6.2325 1.9302 6.7440 17 1 6.7635 2.9759 5.8331 18 1 6.2535 2.4328 8.1411 19 1 7.0758 0.7120 6.6434 20 6 2.0420 2.6543 3.5723 21 1 -0.3633 -1.0244 0.0821 22 1 -0.3633 0.5832 0.8462 23 1 -0.3633 0.4412 -0.9281 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.1299 1.4426 0.0095 27 1 0.4550 2.0822 -1.3114 28 1 1.8282 3.2105 -1.2126 29 1 1.8853 2.0824 -3.3809 30 1 3.2477 1.5020 -2.3935 31 1 1.7974 0.4894 -2.5916 32 1 0.4712 1.9122 1.3997 33 1 1.6134 3.2443 1.1012 34 1 2.3692 -0.3662 2.3022 35 1 0.8019 0.3125 2.8405 36 1 3.3395 -0.1285 4.4189 37 1 1.6393 -0.1777 4.9730 38 1 1.7892 1.5681 6.6952 39 1 4.2222 0.1531 7.6825 40 1 0.9823 2.9031 3.6290 41 1 2.6427 3.5606 3.4965 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592523384.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:46 Heat of formation + Delta-G solvation = -78.644750 kcal Electronic energy + Delta-G solvation = -18637.800037 eV Core-core repulsion = 15937.282919 eV Total energy + Delta-G solvation = -2700.517118 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.45486 -38.35231 -36.01758 -34.13353 -32.14523 -31.70717 -29.68058 -28.41802 -26.37579 -25.12172 -23.62811 -21.91585 -21.27677 -19.83302 -19.05174 -17.28954 -16.88349 -16.48981 -16.05487 -15.89074 -15.55272 -14.69047 -14.62582 -14.16770 -14.02995 -13.80774 -13.61016 -13.31545 -13.06429 -12.96921 -12.75569 -12.51428 -12.38679 -12.35408 -12.18538 -12.05603 -11.80609 -11.78312 -11.29063 -11.18551 -11.09619 -10.80840 -10.57794 -10.09037 -9.25072 -8.18893 -6.31480 1.39691 1.42551 1.53923 2.41200 2.97746 3.18020 3.87099 3.98577 4.02111 4.08142 4.21841 4.34491 4.41458 4.45270 4.51767 4.57209 4.62323 4.67199 4.75448 4.82427 4.89805 4.99098 5.01911 5.08251 5.13198 5.20590 5.25030 5.34902 5.36635 5.40331 5.44719 5.58858 5.66664 5.70629 5.78815 6.01650 6.19499 6.33768 6.73486 7.37184 7.45618 8.87429 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.033627 B = 0.006042 C = 0.005691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.468929 B = 4633.482565 C = 4918.493925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.133 4.133 3 C -0.075 4.075 4 C -0.115 4.115 5 C -0.148 4.148 6 C 0.042 3.958 7 N -0.506 5.506 8 C 0.044 3.956 9 C -0.116 4.116 10 C 0.230 3.770 11 O -0.604 6.604 12 C -0.540 4.540 13 H 0.050 0.950 14 C 0.025 3.975 15 N -0.917 5.917 16 Si 0.959 3.041 17 H -0.273 1.273 18 H -0.279 1.279 19 H -0.279 1.279 20 C 0.060 3.940 21 H 0.055 0.945 22 H 0.044 0.956 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.040 0.960 36 H 0.046 0.954 37 H 0.039 0.961 38 H 0.377 0.623 39 H 0.268 0.732 40 H 0.031 0.969 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.932 -0.960 -14.542 15.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.170 4.170 3 C -0.094 4.094 4 C -0.153 4.153 5 C -0.205 4.205 6 C -0.086 4.086 7 N -0.231 5.231 8 C -0.083 4.083 9 C -0.155 4.155 10 C 0.191 3.809 11 O -0.413 6.413 12 C -0.578 4.578 13 H 0.069 0.931 14 C -0.175 4.175 15 N -0.558 5.558 16 Si 0.785 3.215 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.204 1.204 20 C -0.068 4.068 21 H 0.074 0.926 22 H 0.063 0.937 23 H 0.086 0.914 24 H 0.090 0.910 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.227 0.773 39 H 0.077 0.923 40 H 0.049 0.951 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.635 -0.650 -15.008 15.721 hybrid contribution 0.384 -0.251 1.437 1.509 sum -4.251 -0.901 -13.570 14.249 Atomic orbital electron populations 1.21887 0.95632 1.01566 1.01832 1.21860 0.96476 0.96255 1.02400 1.21083 1.00127 0.95163 0.93064 1.21553 1.00990 0.99140 0.93621 1.21761 1.00570 1.01039 0.97130 1.22575 0.95395 0.99781 0.90843 1.65384 1.51975 1.01993 1.03753 1.23271 0.97389 0.92434 0.95207 1.22681 0.99217 0.99024 0.94568 1.19547 0.87496 0.90413 0.83450 1.86069 1.57909 1.71201 1.26096 1.21888 0.98970 1.22325 1.14646 0.93138 1.25675 1.01719 0.94156 0.95900 1.69748 1.38727 1.26293 1.21043 0.85497 0.80073 0.78064 0.77884 1.19768 1.20450 1.20431 1.22859 0.97392 0.96237 0.90338 0.92559 0.93675 0.91431 0.90952 0.92146 0.91853 0.91125 0.92288 0.91952 0.93237 0.92223 0.93794 0.91379 0.89265 0.94176 0.93558 0.94237 0.77284 0.92286 0.95089 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.25 71.98 0.67 -2.50 16 2 C -0.13 -3.09 5.06 30.59 0.15 -2.94 16 3 C -0.08 -1.90 2.27 -10.79 -0.02 -1.92 16 4 C -0.12 -2.28 5.16 30.59 0.16 -2.12 16 5 C -0.15 -2.51 9.53 71.98 0.69 -1.82 16 6 C 0.04 1.27 4.49 86.30 0.39 1.66 16 7 N -0.51 -19.72 5.32 -880.76 -4.69 -24.41 16 8 C 0.04 1.71 5.10 86.45 0.44 2.16 16 9 C -0.12 -5.58 5.61 31.49 0.18 -5.40 16 10 C 0.23 11.92 1.05 -10.64 -0.01 11.91 16 11 O -0.60 -32.88 12.94 -148.98 -1.93 -34.80 16 12 C -0.54 -30.19 8.07 25.60 0.21 -29.99 16 13 H 0.05 2.87 7.54 -2.91 -0.02 2.85 16 14 C 0.02 1.35 5.04 84.65 0.43 1.77 16 15 N -0.92 -50.49 10.83 21.44 0.23 -50.26 16 16 Si 0.96 43.66 29.54 68.60 2.03 45.69 16 17 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 20 C 0.06 2.69 5.73 86.40 0.49 3.18 16 21 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.04 1.06 5.60 -2.39 -0.01 1.04 16 23 H 0.07 1.20 6.58 -2.39 -0.02 1.18 16 24 H 0.07 1.48 6.67 -2.39 -0.02 1.46 16 25 H 0.06 1.63 4.44 -2.38 -0.01 1.62 16 26 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 27 H 0.07 1.28 6.29 -2.39 -0.02 1.27 16 28 H 0.06 1.18 8.05 -2.39 -0.02 1.16 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.95 6.83 -2.38 -0.02 0.93 16 32 H 0.04 1.30 5.17 -2.39 -0.01 1.28 16 33 H 0.07 2.02 7.86 -2.39 -0.02 2.00 16 34 H 0.09 3.17 5.68 -2.39 -0.01 3.16 16 35 H 0.04 1.46 7.43 -2.38 -0.02 1.44 16 36 H 0.05 2.43 7.34 -2.39 -0.02 2.41 16 37 H 0.04 1.92 7.98 -2.38 -0.02 1.90 16 38 H 0.38 20.92 7.17 -74.05 -0.53 20.39 16 39 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 40 H 0.03 1.35 7.94 -2.39 -0.02 1.33 16 41 H 0.07 3.08 7.68 -2.39 -0.02 3.07 16 Total: -1.00 -58.38 303.44 -0.12 -58.50 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: 0.48 Total: 31.29 kcal Atomic # 6 Polarization: -29.77 SS G_CDS: 3.76 Total: -26.01 kcal Atomic # 7 Polarization: -70.21 SS G_CDS: -4.46 Total: -74.67 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -1.93 Total: -34.80 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -58.38 -0.12 -58.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592523384.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.144 kcal (2) G-P(sol) polarization free energy of solvation -58.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds