Wall clock time and date at job start Sun Mar 29 2020 22:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46899 * 111.00067 * 2 1 4 4 C 1.52990 * 109.47050 * 140.24021 * 3 2 1 5 5 C 1.53003 * 109.47399 * 307.42965 * 4 3 2 6 6 C 1.53007 * 109.47320 * 67.43058 * 4 3 2 7 7 C 1.52999 * 109.47074 * 187.43398 * 4 3 2 8 8 C 1.50702 * 109.47382 * 180.02562 * 7 4 3 9 9 H 1.08005 * 120.00127 * 359.97438 * 8 7 4 10 10 C 1.37875 * 120.00430 * 179.97438 * 8 7 4 11 11 N 1.31512 * 119.99926 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00197 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47253 * 60.00367 * 12 10 8 14 14 H 1.48506 * 109.47168 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47272 * 300.00429 * 12 10 8 16 16 C 1.46898 * 110.99495 * 236.04491 * 2 1 3 17 17 C 1.52999 * 115.54962 * 87.60820 * 16 2 1 18 18 O 1.42906 * 109.46980 * 296.01664 * 17 16 2 19 19 C 1.53001 * 117.50491 * 301.93291 * 16 2 1 20 20 C 1.53003 * 117.49988 * 233.27179 * 16 2 1 21 21 H 1.08995 * 109.46980 * 178.80515 * 1 2 3 22 22 H 1.09007 * 109.46906 * 298.80106 * 1 2 3 23 23 H 1.09002 * 109.47163 * 58.80036 * 1 2 3 24 24 H 1.09000 * 109.46859 * 260.24108 * 3 2 1 25 25 H 1.09003 * 109.47048 * 20.23831 * 3 2 1 26 26 H 1.09002 * 109.46933 * 52.70743 * 5 4 3 27 27 H 1.08999 * 109.47131 * 172.70752 * 5 4 3 28 28 H 1.08999 * 109.47000 * 292.70836 * 5 4 3 29 29 H 1.09004 * 109.46632 * 51.80158 * 6 4 3 30 30 H 1.09001 * 109.46805 * 171.79486 * 6 4 3 31 31 H 1.08990 * 109.47161 * 291.79996 * 6 4 3 32 32 H 1.09006 * 109.46998 * 299.99437 * 7 4 3 33 33 H 1.09000 * 109.47443 * 60.00027 * 7 4 3 34 34 H 0.96999 * 120.00184 * 179.97438 * 11 10 8 35 35 H 1.09004 * 109.47514 * 56.01508 * 17 16 2 36 36 H 1.09002 * 109.47387 * 176.01721 * 17 16 2 37 37 H 0.96695 * 113.99553 * 180.02562 * 18 17 16 38 38 H 1.09002 * 117.49346 * 0.02562 * 19 16 2 39 39 H 1.09000 * 117.50149 * 145.02217 * 19 16 2 40 40 H 1.09001 * 117.50309 * 214.98292 * 20 16 2 41 41 H 1.09000 * 117.49370 * 359.97438 * 20 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.2134 1.4501 0.9225 5 6 2.8490 0.8867 2.2976 6 6 4.3602 0.6329 0.3241 7 6 3.6491 2.9095 1.0686 8 6 4.8492 2.9870 1.9768 9 1 5.2599 2.0856 2.4072 10 6 5.4230 4.2087 2.2583 11 7 4.9227 5.3064 1.7347 12 14 6.9101 4.3048 3.3847 13 1 8.0229 3.5111 2.8041 14 1 7.3331 5.7212 3.5263 15 1 6.5563 3.7584 4.7194 16 6 1.9954 -0.7660 -1.1376 17 6 2.1780 0.0223 -2.4360 18 8 0.9045 0.4709 -2.9041 19 6 1.5784 -2.2334 -1.2548 20 6 3.0062 -1.8743 -0.8360 21 1 -0.3633 -1.0274 -0.0214 22 1 -0.3633 0.4951 0.9006 23 1 -0.3633 0.5324 -0.8790 24 1 2.2883 1.6481 -1.0128 25 1 1.2255 2.0562 0.3555 26 1 2.4169 -0.1071 2.1801 27 1 3.7462 0.8224 2.9133 28 1 2.1244 1.5434 2.7789 29 1 4.5230 0.9380 -0.7096 30 1 5.2688 0.8052 0.9011 31 1 4.1059 -0.4265 0.3545 32 1 3.9089 3.3109 0.0890 33 1 2.8322 3.4917 1.4949 34 1 5.3262 6.1659 1.9331 35 1 2.8209 0.8830 -2.2513 36 1 2.6366 -0.6187 -3.1890 37 1 0.9441 0.9788 -3.7260 38 1 0.9131 -2.6303 -0.4880 39 1 1.4345 -2.6373 -2.2570 40 1 3.8011 -2.0420 -1.5627 41 1 3.2810 -2.0346 0.2066 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597253621.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:44 Heat of formation + Delta-G solvation = -22.191698 kcal Electronic energy + Delta-G solvation = -18852.836904 eV Core-core repulsion = 16154.767774 eV Total energy + Delta-G solvation = -2698.069130 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.49667 -36.50079 -35.63769 -33.48874 -32.03496 -27.71880 -26.94024 -26.11054 -25.76829 -24.21326 -22.55723 -22.08532 -19.01427 -17.57730 -17.32104 -16.49427 -16.06773 -15.11257 -14.74443 -14.07720 -13.93725 -13.50217 -13.36463 -12.92305 -12.54745 -12.44804 -12.12664 -11.86347 -11.65232 -11.39848 -11.15662 -10.85967 -10.85283 -10.73434 -10.47633 -10.24668 -10.19814 -10.06522 -9.87309 -9.68725 -9.39250 -8.84523 -8.80356 -8.26285 -7.79831 -5.91184 -3.90694 3.37644 3.41961 3.44523 3.70031 4.12975 4.34514 4.53397 4.90916 5.05756 5.21607 5.44023 5.44967 5.46427 5.64451 5.71604 5.80685 5.83534 5.90234 5.99701 6.14388 6.19704 6.24089 6.29386 6.44376 6.46218 6.75595 6.82946 6.93019 6.98235 7.32746 7.36590 7.38832 7.51143 7.58343 7.61177 7.77740 7.94678 8.10024 8.55841 9.14787 9.71609 11.20578 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.035353 B = 0.006114 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.810918 B = 4578.529258 C = 4708.412607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.493 5.493 3 C 0.059 3.941 4 C -0.050 4.050 5 C -0.114 4.114 6 C -0.132 4.132 7 C 0.034 3.966 8 C -0.503 4.503 9 H 0.058 0.942 10 C 0.054 3.946 11 N -0.899 5.899 12 Si 0.887 3.113 13 H -0.278 1.278 14 H -0.289 1.289 15 H -0.278 1.278 16 C 0.043 3.957 17 C 0.082 3.918 18 O -0.567 6.567 19 C -0.170 4.170 20 C -0.147 4.147 21 H 0.057 0.943 22 H 0.061 0.939 23 H 0.036 0.964 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.035 0.965 29 H 0.030 0.970 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.010 0.990 33 H 0.012 0.988 34 H 0.258 0.742 35 H 0.065 0.935 36 H 0.045 0.955 37 H 0.374 0.626 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.478 -12.395 -7.842 16.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.215 5.215 3 C -0.068 4.068 4 C -0.051 4.051 5 C -0.172 4.172 6 C -0.189 4.189 7 C -0.004 4.004 8 C -0.542 4.542 9 H 0.076 0.924 10 C -0.146 4.146 11 N -0.540 5.540 12 Si 0.715 3.285 13 H -0.204 1.204 14 H -0.215 1.215 15 H -0.203 1.203 16 C -0.048 4.048 17 C 0.003 3.997 18 O -0.372 6.372 19 C -0.207 4.207 20 C -0.184 4.184 21 H 0.075 0.925 22 H 0.080 0.920 23 H 0.054 0.946 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.028 0.972 33 H 0.030 0.970 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.221 0.779 38 H 0.115 0.885 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.517 -12.734 -6.855 15.862 hybrid contribution 0.805 1.028 -0.647 1.457 sum -5.712 -11.706 -7.502 15.031 Atomic orbital electron populations 1.22376 0.87865 1.01123 1.00593 1.62034 1.06988 1.15115 1.37408 1.22505 0.97925 0.86803 0.99528 1.20546 0.92236 0.98390 0.93897 1.21570 1.00137 0.99143 0.96317 1.21948 0.99149 0.98731 0.99034 1.19133 0.95961 0.88780 0.96523 1.21221 1.12679 0.92440 1.27845 0.92363 1.25015 0.97269 0.96018 0.96347 1.69959 1.41208 0.97910 1.44878 0.86739 0.83480 0.76767 0.81484 1.20390 1.21492 1.20345 1.21487 1.04521 0.89074 0.89697 1.22203 0.85488 0.97997 0.93976 1.86503 1.30161 1.75373 1.45204 1.23097 0.98742 0.96714 1.02179 1.23135 0.92034 1.00266 1.02982 0.92459 0.92023 0.94576 0.93391 0.92343 0.93451 0.93324 0.94577 0.95119 0.92287 0.93235 0.97199 0.96960 0.93196 0.91740 0.93655 0.77909 0.88546 0.89221 0.89028 0.87315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.09 60.07 0.55 0.96 16 2 N -0.49 -7.73 3.42 -227.16 -0.78 -8.51 16 3 C 0.06 1.08 4.15 -3.83 -0.02 1.07 16 4 C -0.05 -1.03 0.61 -154.51 -0.09 -1.13 16 5 C -0.11 -2.30 7.97 37.16 0.30 -2.01 16 6 C -0.13 -2.54 7.51 37.16 0.28 -2.26 16 7 C 0.03 0.86 4.03 -27.88 -0.11 0.75 16 8 C -0.50 -14.02 7.62 -34.44 -0.26 -14.29 16 9 H 0.06 1.58 5.74 -52.48 -0.30 1.28 16 10 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 11 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 12 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 C 0.04 0.60 0.92 -131.60 -0.12 0.48 16 17 C 0.08 1.07 6.05 37.16 0.22 1.29 16 18 O -0.57 -7.16 12.24 -35.23 -0.43 -7.59 16 19 C -0.17 -2.00 9.45 -26.69 -0.25 -2.25 16 20 C -0.15 -1.81 8.04 -26.69 -0.21 -2.03 16 21 H 0.06 0.75 6.84 -51.93 -0.36 0.39 16 22 H 0.06 0.88 8.11 -51.92 -0.42 0.46 16 23 H 0.04 0.54 6.85 -51.93 -0.36 0.18 16 24 H 0.05 0.88 4.72 -51.93 -0.25 0.63 16 25 H 0.06 1.12 7.63 -51.93 -0.40 0.72 16 26 H 0.05 0.87 7.16 -51.93 -0.37 0.50 16 27 H 0.05 1.03 6.87 -51.93 -0.36 0.67 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.03 0.57 7.70 -51.93 -0.40 0.17 16 30 H 0.06 1.25 6.39 -51.93 -0.33 0.92 16 31 H 0.05 0.83 4.26 -51.93 -0.22 0.61 16 32 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.06 0.93 5.67 -51.93 -0.29 0.64 16 36 H 0.05 0.50 8.10 -51.93 -0.42 0.08 16 37 H 0.37 3.11 9.12 45.56 0.42 3.53 16 38 H 0.10 1.13 7.38 -51.93 -0.38 0.75 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.11 1.44 7.12 -51.93 -0.37 1.07 16 LS Contribution 309.39 15.07 4.66 4.66 Total: -1.00 -30.83 309.39 -6.71 -37.54 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -6.06 Total: 1.51 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 0.18 Total: -17.96 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: -0.04 Total: -35.02 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: -0.43 Total: -7.59 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.83 -6.71 -37.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597253621.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.350 kcal (2) G-P(sol) polarization free energy of solvation -30.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds