Wall clock time and date at job start Sun Mar 29 2020 22:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46899 * 111.00067 * 2 1 4 4 C 1.52990 * 109.47050 * 140.24021 * 3 2 1 5 5 C 1.53003 * 109.47399 * 307.42965 * 4 3 2 6 6 C 1.53007 * 109.47320 * 67.43058 * 4 3 2 7 7 C 1.52999 * 109.47074 * 187.43398 * 4 3 2 8 8 C 1.50702 * 109.47382 * 180.02562 * 7 4 3 9 9 H 1.08005 * 120.00127 * 359.97438 * 8 7 4 10 10 C 1.37875 * 120.00430 * 179.97438 * 8 7 4 11 11 N 1.31512 * 119.99926 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00197 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47253 * 60.00367 * 12 10 8 14 14 H 1.48506 * 109.47168 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47272 * 300.00429 * 12 10 8 16 16 C 1.46898 * 110.99495 * 236.04491 * 2 1 3 17 17 C 1.52999 * 115.54962 * 87.60820 * 16 2 1 18 18 O 1.42906 * 109.46980 * 296.01664 * 17 16 2 19 19 C 1.53001 * 117.50491 * 301.93291 * 16 2 1 20 20 C 1.53003 * 117.49988 * 233.27179 * 16 2 1 21 21 H 1.08995 * 109.46980 * 178.80515 * 1 2 3 22 22 H 1.09007 * 109.46906 * 298.80106 * 1 2 3 23 23 H 1.09002 * 109.47163 * 58.80036 * 1 2 3 24 24 H 1.09000 * 109.46859 * 260.24108 * 3 2 1 25 25 H 1.09003 * 109.47048 * 20.23831 * 3 2 1 26 26 H 1.09002 * 109.46933 * 52.70743 * 5 4 3 27 27 H 1.08999 * 109.47131 * 172.70752 * 5 4 3 28 28 H 1.08999 * 109.47000 * 292.70836 * 5 4 3 29 29 H 1.09004 * 109.46632 * 51.80158 * 6 4 3 30 30 H 1.09001 * 109.46805 * 171.79486 * 6 4 3 31 31 H 1.08990 * 109.47161 * 291.79996 * 6 4 3 32 32 H 1.09006 * 109.46998 * 299.99437 * 7 4 3 33 33 H 1.09000 * 109.47443 * 60.00027 * 7 4 3 34 34 H 0.96999 * 120.00184 * 179.97438 * 11 10 8 35 35 H 1.09004 * 109.47514 * 56.01508 * 17 16 2 36 36 H 1.09002 * 109.47387 * 176.01721 * 17 16 2 37 37 H 0.96695 * 113.99553 * 180.02562 * 18 17 16 38 38 H 1.09002 * 117.49346 * 0.02562 * 19 16 2 39 39 H 1.09000 * 117.50149 * 145.02217 * 19 16 2 40 40 H 1.09001 * 117.50309 * 214.98292 * 20 16 2 41 41 H 1.09000 * 117.49370 * 359.97438 * 20 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.2134 1.4501 0.9225 5 6 2.8490 0.8867 2.2976 6 6 4.3602 0.6329 0.3241 7 6 3.6491 2.9095 1.0686 8 6 4.8492 2.9870 1.9768 9 1 5.2599 2.0856 2.4072 10 6 5.4230 4.2087 2.2583 11 7 4.9227 5.3064 1.7347 12 14 6.9101 4.3048 3.3847 13 1 8.0229 3.5111 2.8041 14 1 7.3331 5.7212 3.5263 15 1 6.5563 3.7584 4.7194 16 6 1.9954 -0.7660 -1.1376 17 6 2.1780 0.0223 -2.4360 18 8 0.9045 0.4709 -2.9041 19 6 1.5784 -2.2334 -1.2548 20 6 3.0062 -1.8743 -0.8360 21 1 -0.3633 -1.0274 -0.0214 22 1 -0.3633 0.4951 0.9006 23 1 -0.3633 0.5324 -0.8790 24 1 2.2883 1.6481 -1.0128 25 1 1.2255 2.0562 0.3555 26 1 2.4169 -0.1071 2.1801 27 1 3.7462 0.8224 2.9133 28 1 2.1244 1.5434 2.7789 29 1 4.5230 0.9380 -0.7096 30 1 5.2688 0.8052 0.9011 31 1 4.1059 -0.4265 0.3545 32 1 3.9089 3.3109 0.0890 33 1 2.8322 3.4917 1.4949 34 1 5.3262 6.1659 1.9331 35 1 2.8209 0.8830 -2.2513 36 1 2.6366 -0.6187 -3.1890 37 1 0.9441 0.9788 -3.7260 38 1 0.9131 -2.6303 -0.4880 39 1 1.4345 -2.6373 -2.2570 40 1 3.8011 -2.0420 -1.5627 41 1 3.2810 -2.0346 0.2066 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597253621.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:43 Heat of formation + Delta-G solvation = -43.190973 kcal Electronic energy + Delta-G solvation = -18853.747500 eV Core-core repulsion = 16154.767774 eV Total energy + Delta-G solvation = -2698.979727 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.67458 -37.97305 -36.70438 -34.98974 -33.94789 -29.28875 -28.57891 -27.70103 -27.08494 -25.73884 -24.23908 -23.13603 -20.27497 -19.12912 -18.30729 -18.27000 -17.52156 -16.61836 -16.22893 -15.69005 -15.08679 -15.00726 -14.73233 -14.23375 -14.05556 -13.96702 -13.71184 -13.33125 -13.08196 -12.73841 -12.71323 -12.58856 -12.36268 -12.27385 -12.16362 -11.97757 -11.87509 -11.37626 -11.15583 -11.07851 -10.80997 -10.71110 -10.50399 -10.45757 -9.05813 -8.12733 -6.19796 1.40686 1.43379 1.50636 2.44382 2.75871 2.96259 3.20662 3.42209 3.94969 4.06657 4.07542 4.24465 4.37035 4.43705 4.48962 4.59231 4.68599 4.78873 4.79333 4.84602 4.85169 4.98700 5.05249 5.12279 5.15686 5.17142 5.28326 5.31357 5.38197 5.55063 5.56841 5.63574 5.74761 5.92443 5.95733 6.17998 6.34856 6.41204 6.82730 6.95079 7.47284 8.99505 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.035353 B = 0.006114 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.810918 B = 4578.529258 C = 4708.412607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.496 5.496 3 C 0.071 3.929 4 C -0.046 4.046 5 C -0.104 4.104 6 C -0.121 4.121 7 C 0.041 3.959 8 C -0.513 4.513 9 H 0.065 0.935 10 C -0.005 4.005 11 N -0.939 5.939 12 Si 0.956 3.044 13 H -0.267 1.267 14 H -0.287 1.287 15 H -0.269 1.269 16 C 0.015 3.985 17 C 0.086 3.914 18 O -0.581 6.581 19 C -0.150 4.150 20 C -0.146 4.146 21 H 0.075 0.925 22 H 0.057 0.943 23 H 0.028 0.972 24 H 0.046 0.954 25 H 0.041 0.959 26 H 0.070 0.930 27 H 0.035 0.965 28 H 0.022 0.978 29 H 0.031 0.969 30 H 0.037 0.963 31 H 0.078 0.922 32 H -0.019 1.019 33 H -0.021 1.021 34 H 0.259 0.741 35 H 0.043 0.957 36 H 0.069 0.931 37 H 0.391 0.609 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.106 -14.677 -8.091 17.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.218 5.218 3 C -0.056 4.056 4 C -0.047 4.047 5 C -0.161 4.161 6 C -0.178 4.178 7 C 0.004 3.996 8 C -0.551 4.551 9 H 0.083 0.917 10 C -0.201 4.201 11 N -0.581 5.581 12 Si 0.781 3.219 13 H -0.192 1.192 14 H -0.213 1.213 15 H -0.194 1.194 16 C -0.075 4.075 17 C 0.007 3.993 18 O -0.389 6.389 19 C -0.187 4.187 20 C -0.183 4.183 21 H 0.094 0.906 22 H 0.076 0.924 23 H 0.046 0.954 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.089 0.911 27 H 0.054 0.946 28 H 0.041 0.959 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.096 0.904 32 H -0.001 1.001 33 H -0.003 1.003 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.087 0.913 37 H 0.241 0.759 38 H 0.117 0.883 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.149 -15.034 -7.117 17.734 hybrid contribution 0.624 1.731 -0.623 1.943 sum -5.525 -13.303 -7.740 16.352 Atomic orbital electron populations 1.22367 0.87046 1.02090 1.00073 1.61923 1.07706 1.13129 1.39002 1.22194 0.96359 0.88507 0.98566 1.20409 0.93985 0.95065 0.95194 1.21472 0.99245 0.99974 0.95451 1.21843 0.97347 1.00138 0.98449 1.19011 0.94453 0.91875 0.94274 1.21586 1.13057 0.92713 1.27735 0.91711 1.25930 1.00491 0.95695 0.98025 1.70107 1.42928 0.98501 1.46520 0.85631 0.79787 0.76889 0.79544 1.19170 1.21284 1.19401 1.21690 1.06445 0.89932 0.89470 1.22117 0.85321 0.97447 0.94367 1.86456 1.30117 1.75813 1.46522 1.23142 0.98084 0.94350 1.03161 1.23202 0.92902 0.99148 1.03085 0.90615 0.92398 0.95352 0.93596 0.94071 0.91137 0.94561 0.95894 0.95007 0.94394 0.90380 1.00053 1.00291 0.93185 0.93945 0.91307 0.75931 0.88287 0.87543 0.87365 0.88065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 9.09 127.69 1.16 2.04 16 2 N -0.50 -14.82 3.42 -872.61 -2.98 -17.80 16 3 C 0.07 2.62 4.15 86.30 0.36 2.98 16 4 C -0.05 -1.91 0.61 -52.18 -0.03 -1.94 16 5 C -0.10 -4.16 7.97 71.98 0.57 -3.59 16 6 C -0.12 -4.57 7.51 71.98 0.54 -4.03 16 7 C 0.04 2.22 4.03 29.85 0.12 2.34 16 8 C -0.51 -29.08 7.62 25.60 0.20 -28.89 16 9 H 0.06 3.53 5.74 -2.91 -0.02 3.51 16 10 C 0.00 -0.29 5.46 84.65 0.46 0.18 16 11 N -0.94 -58.39 13.29 21.45 0.28 -58.11 16 12 Si 0.96 45.10 29.54 68.60 2.03 47.12 16 13 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 14 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 15 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 16 C 0.02 0.39 0.92 3.53 0.00 0.39 16 17 C 0.09 2.07 6.05 71.98 0.44 2.51 16 18 O -0.58 -13.69 12.24 -148.98 -1.82 -15.52 16 19 C -0.15 -2.99 9.45 30.62 0.29 -2.70 16 20 C -0.15 -3.13 8.04 30.62 0.25 -2.89 16 21 H 0.08 1.78 6.84 -2.39 -0.02 1.77 16 22 H 0.06 1.60 8.11 -2.38 -0.02 1.58 16 23 H 0.03 0.81 6.85 -2.39 -0.02 0.80 16 24 H 0.05 1.71 4.72 -2.39 -0.01 1.69 16 25 H 0.04 1.62 7.63 -2.39 -0.02 1.60 16 26 H 0.07 2.47 7.16 -2.39 -0.02 2.46 16 27 H 0.04 1.51 6.87 -2.39 -0.02 1.49 16 28 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.03 1.16 7.70 -2.39 -0.02 1.15 16 30 H 0.04 1.57 6.39 -2.39 -0.02 1.56 16 31 H 0.08 2.48 4.26 -2.39 -0.01 2.47 16 32 H -0.02 -1.11 8.14 -2.38 -0.02 -1.13 16 33 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 34 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 35 H 0.04 1.20 5.67 -2.38 -0.01 1.19 16 36 H 0.07 1.32 8.10 -2.39 -0.02 1.30 16 37 H 0.39 5.92 9.12 -74.06 -0.68 5.25 16 38 H 0.10 1.95 7.38 -2.39 -0.02 1.93 16 39 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.10 2.36 7.12 -2.39 -0.02 2.34 16 Total: -1.00 -66.77 309.39 2.19 -64.58 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.33 Total: 13.32 kcal Atomic # 6 Polarization: -37.96 SS G_CDS: 4.35 Total: -33.60 kcal Atomic # 7 Polarization: -73.21 SS G_CDS: -2.70 Total: -75.91 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -1.82 Total: -15.52 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -66.77 2.19 -64.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597253621.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.392 kcal (2) G-P(sol) polarization free energy of solvation -66.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds