Wall clock time and date at job start Sun Mar 29 2020 22:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47011 * 2 1 4 4 H 1.09001 * 109.50746 * 54.91155 * 3 2 1 5 5 C 1.53097 * 109.50435 * 174.99574 * 3 2 1 6 6 N 1.47015 * 109.25714 * 176.82809 * 5 3 2 7 7 C 1.46901 * 110.99969 * 177.61126 * 6 5 3 8 8 C 1.53007 * 109.47091 * 176.22004 * 7 6 5 9 9 H 1.08997 * 109.47097 * 302.57458 * 8 7 6 10 10 C 1.52998 * 109.47036 * 182.57652 * 8 7 6 11 11 C 1.52999 * 109.46790 * 62.57587 * 8 7 6 12 12 C 1.50701 * 109.46544 * 185.00079 * 11 8 7 13 13 H 1.07992 * 120.00318 * 359.97438 * 12 11 8 14 14 C 1.37876 * 119.99559 * 179.97438 * 12 11 8 15 15 N 1.31521 * 119.99938 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 120.00266 * 359.97438 * 14 12 11 17 17 H 1.48495 * 109.47141 * 90.00193 * 16 14 12 18 18 H 1.48501 * 109.47082 * 209.99802 * 16 14 12 19 19 H 1.48493 * 109.47097 * 329.99976 * 16 14 12 20 20 C 1.47016 * 110.75284 * 301.38389 * 6 5 3 21 21 C 1.53097 * 109.25623 * 58.61498 * 20 6 5 22 22 O 1.43006 * 109.54164 * 294.80092 * 3 2 1 23 23 H 1.08998 * 109.47526 * 300.00263 * 1 2 3 24 24 H 1.09006 * 109.46782 * 59.99950 * 1 2 3 25 25 H 1.09006 * 109.46929 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47075 * 239.99451 * 2 1 3 27 27 H 1.09006 * 109.46782 * 120.00050 * 2 1 3 28 28 H 1.09000 * 109.50775 * 56.89461 * 5 3 2 29 29 H 1.08996 * 109.54633 * 296.78451 * 5 3 2 30 30 H 1.09002 * 109.47019 * 56.22164 * 7 6 5 31 31 H 1.08994 * 109.46812 * 296.21917 * 7 6 5 32 32 H 1.09005 * 109.46748 * 294.95579 * 10 8 7 33 33 H 1.09004 * 109.47392 * 54.95308 * 10 8 7 34 34 H 1.08999 * 109.47245 * 174.95545 * 10 8 7 35 35 H 1.09000 * 109.47256 * 304.99798 * 11 8 7 36 36 H 1.09001 * 109.47367 * 65.00159 * 11 8 7 37 37 H 0.97005 * 119.99704 * 180.02562 * 15 14 12 38 38 H 1.09001 * 109.51026 * 178.55416 * 20 6 5 39 39 H 1.09005 * 109.50584 * 298.68466 * 20 6 5 40 40 H 1.08998 * 109.50858 * 183.21486 * 21 20 6 41 41 H 1.08999 * 109.50611 * 63.08607 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6045 1.9825 0.8407 5 6 3.5658 1.4452 0.1259 6 7 4.0562 2.8290 0.0489 7 6 5.5139 2.8814 0.2225 8 6 5.9975 4.3219 0.0428 9 1 5.6979 4.6858 -0.9400 10 6 7.5224 4.3662 0.1599 11 6 5.3769 5.2070 1.1255 12 6 5.7542 6.6445 0.8763 13 1 6.3749 6.9011 0.0306 14 6 5.3069 7.6322 1.7280 15 7 5.6366 8.8867 1.5109 16 14 4.2327 7.1885 3.1904 17 1 5.0918 6.9072 4.3685 18 1 3.3245 8.3221 3.4995 19 1 3.4277 5.9836 2.8658 20 6 3.6539 3.4545 -1.2193 21 6 2.1272 3.4315 -1.3317 22 8 1.6665 2.0819 -1.2234 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.9990 0.8599 -0.6852 29 1 3.8535 1.0099 1.0828 30 1 5.9915 2.2425 -0.5204 31 1 5.7735 2.5331 1.2221 32 1 7.8173 4.0878 1.1717 33 1 7.9620 3.6675 -0.5519 34 1 7.8742 5.3749 -0.0566 35 1 4.2918 5.1063 1.0992 36 1 5.7468 4.8985 2.1033 37 1 5.3222 9.5815 2.1103 38 1 4.0052 4.4860 -1.2441 39 1 4.0884 2.9012 -2.0520 40 1 1.8269 3.8424 -2.2956 41 1 1.6942 4.0293 -0.5297 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602437456.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:19 Heat of formation + Delta-G solvation = -81.006835 kcal Electronic energy + Delta-G solvation = -18381.966817 eV Core-core repulsion = 15681.347271 eV Total energy + Delta-G solvation = -2700.619546 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.80987 -38.18403 -35.53375 -34.90109 -34.01314 -30.90844 -29.86745 -28.68795 -25.92322 -24.95473 -24.25720 -22.40436 -21.48425 -20.31750 -18.90827 -17.46270 -17.36723 -16.55964 -16.13512 -15.81035 -15.72605 -15.30394 -15.08998 -14.59120 -14.48487 -14.07011 -14.02732 -13.54204 -13.03491 -12.87034 -12.86241 -12.81200 -12.58083 -12.38949 -12.15470 -11.95749 -11.83423 -11.69038 -11.39790 -11.34568 -11.16212 -10.96241 -10.70495 -10.49860 -9.24514 -8.23939 -6.24402 1.35500 1.38133 1.51719 2.39728 2.76477 2.91120 3.12695 3.75780 3.95718 4.02856 4.11090 4.16572 4.24716 4.26407 4.42345 4.45040 4.49406 4.59787 4.64771 4.73607 4.79978 4.82600 4.87109 4.92734 4.98672 5.05261 5.10945 5.13036 5.26988 5.33678 5.45329 5.45811 5.59335 5.70754 5.76866 6.04298 6.13468 6.25010 6.37594 6.83480 7.39347 8.92829 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025399 B = 0.006412 C = 0.005775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.133975 B = 4365.551582 C = 4847.347570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C 0.089 3.911 4 H 0.054 0.946 5 C 0.027 3.973 6 N -0.550 5.550 7 C 0.072 3.928 8 C -0.079 4.079 9 H 0.054 0.946 10 C -0.128 4.128 11 C 0.007 3.993 12 C -0.515 4.515 13 H 0.034 0.966 14 C 0.005 3.995 15 N -0.955 5.955 16 Si 0.942 3.058 17 H -0.271 1.271 18 H -0.288 1.288 19 H -0.249 1.249 20 C 0.018 3.982 21 C 0.067 3.933 22 O -0.391 6.391 23 H 0.051 0.949 24 H 0.048 0.952 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.094 0.906 28 H 0.043 0.957 29 H 0.095 0.905 30 H 0.041 0.959 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.036 0.964 35 H 0.024 0.976 36 H 0.006 0.994 37 H 0.263 0.737 38 H 0.080 0.920 39 H 0.041 0.959 40 H 0.113 0.887 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.289 -19.448 -2.927 20.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C 0.031 3.969 4 H 0.072 0.928 5 C -0.101 4.101 6 N -0.275 5.275 7 C -0.056 4.056 8 C -0.097 4.097 9 H 0.072 0.928 10 C -0.186 4.186 11 C -0.030 4.030 12 C -0.553 4.553 13 H 0.052 0.948 14 C -0.191 4.191 15 N -0.597 5.597 16 Si 0.767 3.233 17 H -0.196 1.196 18 H -0.214 1.214 19 H -0.173 1.173 20 C -0.111 4.111 21 C -0.010 4.010 22 O -0.311 6.311 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.113 0.887 28 H 0.061 0.939 29 H 0.113 0.887 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.042 0.958 36 H 0.025 0.975 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.060 0.940 40 H 0.131 0.869 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.632 -19.121 -2.623 20.754 hybrid contribution 0.410 0.543 0.141 0.695 sum -7.222 -18.578 -2.482 20.086 Atomic orbital electron populations 1.21684 0.94837 1.02196 1.01677 1.21529 0.97036 0.92580 1.03553 1.22345 0.92767 0.95114 0.86709 0.92762 1.22833 0.96049 0.88806 1.02429 1.62158 1.13418 1.17720 1.34211 1.22140 0.86062 0.96142 1.01230 1.21065 0.95693 0.93901 0.99068 0.92771 1.21619 0.94922 1.00743 1.01289 1.19423 0.96513 0.92608 0.94481 1.21542 1.30342 0.92400 1.10996 0.94764 1.25899 0.97626 0.94687 1.00896 1.70076 1.48316 1.01226 1.40062 0.85764 0.79446 0.78417 0.79677 1.19590 1.21413 1.17256 1.22791 0.97082 1.00827 0.90350 1.22664 0.92219 0.83333 1.02783 1.87917 1.77027 1.26610 1.39505 0.92942 0.93330 0.91177 0.91116 0.88737 0.93924 0.88715 0.94043 0.90433 0.92983 0.91792 0.94520 0.95777 0.97543 0.92846 0.90192 0.94032 0.86863 0.93449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.81 71.98 0.71 -1.77 16 2 C -0.11 -1.92 5.65 30.59 0.17 -1.75 16 3 C 0.09 2.11 2.80 30.63 0.09 2.20 16 4 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 5 C 0.03 0.65 4.95 86.31 0.43 1.08 16 6 N -0.55 -16.94 4.10 -895.19 -3.67 -20.61 16 7 C 0.07 2.20 4.54 86.31 0.39 2.59 16 8 C -0.08 -3.00 1.87 -10.79 -0.02 -3.02 16 9 H 0.05 2.17 6.11 -2.39 -0.01 2.15 16 10 C -0.13 -4.58 8.92 71.98 0.64 -3.93 16 11 C 0.01 0.34 3.40 29.85 0.10 0.44 16 12 C -0.51 -29.63 9.03 25.60 0.23 -29.40 16 13 H 0.03 2.16 7.30 -2.91 -0.02 2.14 16 14 C 0.00 0.28 5.47 84.65 0.46 0.75 16 15 N -0.95 -60.78 13.96 21.45 0.30 -60.48 16 16 Si 0.94 45.79 27.47 68.60 1.88 47.67 16 17 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 18 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 19 H -0.25 -11.50 6.54 99.48 0.65 -10.85 16 20 C 0.02 0.53 5.15 86.31 0.44 0.98 16 21 C 0.07 1.86 7.01 72.01 0.50 2.36 16 22 O -0.39 -10.66 10.02 -148.98 -1.49 -12.16 16 23 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.05 0.95 7.83 -2.38 -0.02 0.93 16 25 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 26 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 28 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.04 1.51 7.10 -2.39 -0.02 1.49 16 35 H 0.02 1.16 6.59 -2.39 -0.02 1.15 16 36 H 0.01 0.30 7.57 -2.39 -0.02 0.28 16 37 H 0.26 15.70 8.31 -92.70 -0.77 14.93 16 38 H 0.08 2.80 5.97 -2.39 -0.01 2.79 16 39 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -66.31 315.65 2.08 -64.23 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 0.90 Total: 10.82 kcal Atomic # 6 Polarization: -33.62 SS G_CDS: 4.15 Total: -29.47 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -3.37 Total: -81.09 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: -1.49 Total: -12.16 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.88 Total: 47.67 kcal Total: -66.31 2.08 -64.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602437456.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.775 kcal (2) G-P(sol) polarization free energy of solvation -66.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds