Wall clock time and date at job start Sun Mar 29 2020 22:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47030 * 2 1 4 4 H 1.09004 * 109.54364 * 305.11020 * 3 2 1 5 5 C 1.53096 * 109.50465 * 184.99856 * 3 2 1 6 6 N 1.47017 * 109.29606 * 183.23826 * 5 3 2 7 7 C 1.46891 * 111.00473 * 182.37198 * 6 5 3 8 8 C 1.52997 * 109.47219 * 75.77542 * 7 6 5 9 9 H 1.09002 * 109.47267 * 303.88059 * 8 7 6 10 10 C 1.53000 * 109.47158 * 63.87873 * 8 7 6 11 11 C 1.53003 * 109.47625 * 183.88171 * 8 7 6 12 12 C 1.50699 * 109.47321 * 175.00205 * 11 8 7 13 13 H 1.07999 * 120.00042 * 359.97438 * 12 11 8 14 14 C 1.37879 * 119.99785 * 180.02562 * 12 11 8 15 15 N 1.31514 * 120.00089 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00099 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47308 * 90.00038 * 16 14 12 18 18 H 1.48494 * 109.47464 * 210.00095 * 16 14 12 19 19 H 1.48500 * 109.47392 * 330.00220 * 16 14 12 20 20 C 1.47017 * 110.75189 * 58.59558 * 6 5 3 21 21 C 1.53102 * 109.25729 * 301.38751 * 20 6 5 22 22 O 1.43011 * 109.25997 * 56.84485 * 21 20 6 23 23 H 1.09004 * 109.47341 * 300.00003 * 1 2 3 24 24 H 1.09002 * 109.47448 * 59.99734 * 1 2 3 25 25 H 1.08993 * 109.47198 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46824 * 240.00211 * 2 1 3 27 27 H 1.08997 * 109.46843 * 119.99888 * 2 1 3 28 28 H 1.09000 * 109.50669 * 63.28529 * 5 3 2 29 29 H 1.09003 * 109.51227 * 303.19335 * 5 3 2 30 30 H 1.08997 * 109.47572 * 195.77566 * 7 6 5 31 31 H 1.08999 * 109.47202 * 315.78049 * 7 6 5 32 32 H 1.09006 * 109.46890 * 65.38637 * 10 8 7 33 33 H 1.08997 * 109.47414 * 185.38138 * 10 8 7 34 34 H 1.08999 * 109.47469 * 305.38666 * 10 8 7 35 35 H 1.09003 * 109.46897 * 295.00358 * 11 8 7 36 36 H 1.08996 * 109.47171 * 54.99584 * 11 8 7 37 37 H 0.96999 * 120.00101 * 180.02562 * 15 14 12 38 38 H 1.08994 * 109.50945 * 61.31921 * 20 6 5 39 39 H 1.08998 * 109.50764 * 181.45469 * 20 6 5 40 40 H 1.08993 * 109.50722 * 176.78349 * 21 20 6 41 41 H 1.09003 * 109.50308 * 296.91443 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6045 1.9832 -0.8403 5 6 3.5657 1.4453 -0.1257 6 7 4.0572 2.8286 -0.0473 7 6 5.5150 2.8801 -0.2203 8 6 5.8604 2.6839 -1.6978 9 1 5.4294 1.7468 -2.0504 10 6 5.2904 3.8460 -2.5136 11 6 7.3806 2.6407 -1.8649 12 6 7.7197 2.3254 -3.2990 13 1 6.9298 2.1707 -4.0192 14 6 9.0382 2.2332 -3.6914 15 7 9.3342 1.9585 -4.9431 16 14 10.4043 2.5000 -2.4456 17 1 10.7600 1.2032 -1.8157 18 1 11.5964 3.0609 -3.1307 19 1 9.9426 3.4480 -1.4000 20 6 3.6549 3.4532 1.2214 21 6 2.1281 3.4312 1.3333 22 8 1.6664 2.0822 1.2235 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8528 1.0109 -1.0833 29 1 3.9989 0.8587 0.6845 30 1 5.8866 3.8487 0.1141 31 1 5.9790 2.0896 0.3693 32 1 5.7909 4.7710 -2.2269 33 1 5.4528 3.6590 -3.5750 34 1 4.2216 3.9362 -2.3199 35 1 7.8033 3.6088 -1.5961 36 1 7.7958 1.8701 -1.2155 37 1 10.2618 1.8933 -5.2190 38 1 4.0887 2.8989 2.0536 39 1 4.0069 4.4844 1.2472 40 1 1.8279 3.8414 2.2974 41 1 1.6959 4.0302 0.5316 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602437457.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:21 Heat of formation + Delta-G solvation = -84.045339 kcal Electronic energy + Delta-G solvation = -18104.361904 eV Core-core repulsion = 15403.610599 eV Total energy + Delta-G solvation = -2700.751305 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.76411 -38.06639 -35.73239 -34.90090 -34.02064 -30.87813 -29.84548 -28.52730 -26.18789 -25.14845 -24.04292 -22.25470 -21.37264 -20.57221 -18.92186 -17.48153 -17.33138 -16.40474 -16.27415 -15.87562 -15.72532 -15.28323 -14.92162 -14.71605 -14.57224 -14.21574 -13.87301 -13.53175 -13.26235 -12.86575 -12.82514 -12.71977 -12.51411 -12.27277 -12.10979 -11.94920 -11.84117 -11.80574 -11.41109 -11.39155 -11.16756 -11.07916 -10.73722 -10.49061 -9.32186 -8.26222 -6.28619 1.35212 1.37049 1.48728 2.37294 2.74617 2.88936 3.09014 3.75267 3.94055 4.02183 4.12284 4.16945 4.22428 4.34184 4.40990 4.44904 4.47514 4.60568 4.66027 4.80809 4.81415 4.83596 4.84064 4.92822 5.00819 5.04048 5.09828 5.12238 5.25732 5.37627 5.41091 5.44898 5.53499 5.67726 5.72334 5.99794 6.07648 6.25978 6.34946 6.78936 7.34958 8.90621 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034626 B = 0.005009 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.454984 B = 5589.006845 C = 5935.979099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C 0.099 3.901 4 H 0.062 0.938 5 C 0.023 3.977 6 N -0.540 5.540 7 C 0.069 3.931 8 C -0.065 4.065 9 H 0.046 0.954 10 C -0.113 4.113 11 C -0.007 4.007 12 C -0.518 4.518 13 H 0.034 0.966 14 C 0.002 3.998 15 N -0.954 5.954 16 Si 0.947 3.053 17 H -0.269 1.269 18 H -0.285 1.285 19 H -0.247 1.247 20 C 0.016 3.984 21 C 0.065 3.935 22 O -0.394 6.394 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.035 0.965 30 H 0.079 0.921 31 H 0.030 0.970 32 H 0.043 0.957 33 H 0.025 0.975 34 H 0.065 0.935 35 H 0.020 0.980 36 H 0.012 0.988 37 H 0.264 0.736 38 H 0.036 0.964 39 H 0.097 0.903 40 H 0.119 0.881 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.498 1.116 15.051 21.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C 0.041 3.959 4 H 0.080 0.920 5 C -0.105 4.105 6 N -0.264 5.264 7 C -0.058 4.058 8 C -0.084 4.084 9 H 0.065 0.935 10 C -0.170 4.170 11 C -0.044 4.044 12 C -0.556 4.556 13 H 0.052 0.948 14 C -0.194 4.194 15 N -0.595 5.595 16 Si 0.771 3.229 17 H -0.194 1.194 18 H -0.211 1.211 19 H -0.170 1.170 20 C -0.112 4.112 21 C -0.011 4.011 22 O -0.313 6.313 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.102 0.898 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.044 0.956 34 H 0.084 0.916 35 H 0.038 0.962 36 H 0.030 0.970 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.115 0.885 40 H 0.137 0.863 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.691 1.280 14.710 21.546 hybrid contribution 1.642 -0.402 0.208 1.704 sum -14.049 0.877 14.918 20.511 Atomic orbital electron populations 1.21657 0.94236 1.02181 1.01969 1.21550 0.97517 0.93248 1.03074 1.22201 0.91886 0.94854 0.86983 0.92002 1.22839 0.96523 0.89539 1.01583 1.62157 1.12579 1.17501 1.34172 1.22117 0.86607 1.01064 0.96038 1.20850 0.95074 0.98435 0.94070 0.93522 1.21462 1.00223 0.97070 0.98277 1.19579 0.94113 0.96142 0.94611 1.21429 0.92340 1.46717 0.95113 0.94795 1.25987 1.01720 0.94598 0.97080 1.70071 1.19384 1.51531 1.18519 0.85702 0.78140 0.79488 0.79568 1.19423 1.21126 1.17013 1.22885 0.97583 1.00879 0.89825 1.22767 0.91813 0.83162 1.03385 1.87929 1.76861 1.27299 1.39218 0.92717 0.92656 0.91567 0.89794 0.91431 0.90421 0.94721 0.90248 0.95191 0.93758 0.95555 0.91608 0.96217 0.96982 0.92675 0.94543 0.88474 0.86316 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.81 71.98 0.71 -1.72 16 2 C -0.12 -2.26 5.65 30.59 0.17 -2.09 16 3 C 0.10 2.28 2.80 30.63 0.09 2.37 16 4 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 5 C 0.02 0.63 4.75 86.31 0.41 1.04 16 6 N -0.54 -14.74 3.97 -895.23 -3.56 -18.30 16 7 C 0.07 2.17 4.40 86.30 0.38 2.55 16 8 C -0.07 -2.56 2.39 -10.79 -0.03 -2.58 16 9 H 0.05 1.94 6.78 -2.39 -0.02 1.92 16 10 C -0.11 -4.30 8.86 71.98 0.64 -3.67 16 11 C -0.01 -0.31 3.52 29.85 0.10 -0.20 16 12 C -0.52 -29.98 9.03 25.60 0.23 -29.75 16 13 H 0.03 2.17 7.31 -2.91 -0.02 2.15 16 14 C 0.00 0.13 5.47 84.66 0.46 0.60 16 15 N -0.95 -60.53 13.96 21.45 0.30 -60.23 16 16 Si 0.95 44.70 27.47 68.60 1.88 46.59 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 19 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 20 C 0.02 0.35 5.60 86.31 0.48 0.84 16 21 C 0.07 1.26 7.01 72.02 0.50 1.77 16 22 O -0.39 -9.22 10.02 -148.98 -1.49 -10.71 16 23 H 0.05 0.99 7.83 -2.38 -0.02 0.97 16 24 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.08 1.53 8.14 -2.39 -0.02 1.52 16 27 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.08 2.25 6.76 -2.39 -0.02 2.23 16 29 H 0.03 0.94 8.13 -2.39 -0.02 0.92 16 30 H 0.08 2.32 7.86 -2.39 -0.02 2.31 16 31 H 0.03 0.95 7.99 -2.39 -0.02 0.93 16 32 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.03 1.13 7.11 -2.39 -0.02 1.11 16 34 H 0.06 2.22 7.57 -2.39 -0.02 2.20 16 35 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 36 H 0.01 0.55 7.57 -2.39 -0.02 0.53 16 37 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 38 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.10 1.86 8.02 -2.39 -0.02 1.84 16 40 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -65.68 317.17 2.19 -63.50 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 0.90 Total: 10.02 kcal Atomic # 6 Polarization: -35.01 SS G_CDS: 4.15 Total: -30.86 kcal Atomic # 7 Polarization: -75.27 SS G_CDS: -3.26 Total: -78.53 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -1.49 Total: -10.71 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.59 kcal Total: -65.68 2.19 -63.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602437457.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.548 kcal (2) G-P(sol) polarization free energy of solvation -65.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds