Wall clock time and date at job start Sun Mar 29 2020 22:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46998 * 2 1 4 4 H 1.09003 * 109.50911 * 55.08728 * 3 2 1 5 5 C 1.53102 * 109.54253 * 175.19389 * 3 2 1 6 6 N 1.47015 * 109.25670 * 176.80894 * 5 3 2 7 7 C 1.46894 * 110.99937 * 177.61088 * 6 5 3 8 8 C 1.53000 * 109.47255 * 189.68070 * 7 6 5 9 9 H 1.09007 * 109.46792 * 304.99473 * 8 7 6 10 10 C 1.52996 * 109.47228 * 64.99471 * 8 7 6 11 11 C 1.52999 * 109.47309 * 184.99779 * 8 7 6 12 12 C 1.50702 * 109.47525 * 174.99526 * 11 8 7 13 13 H 1.08002 * 119.99441 * 0.02562 * 12 11 8 14 14 C 1.37871 * 120.00075 * 180.02562 * 12 11 8 15 15 N 1.31514 * 120.00481 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99886 * 179.73007 * 14 12 11 17 17 H 1.48502 * 109.46964 * 270.27509 * 16 14 12 18 18 H 1.48505 * 109.47036 * 30.26897 * 16 14 12 19 19 H 1.48490 * 109.47395 * 150.27411 * 16 14 12 20 20 C 1.47020 * 110.75233 * 301.38135 * 6 5 3 21 21 C 1.53100 * 109.25542 * 58.61678 * 20 6 5 22 22 O 1.43014 * 109.50795 * 294.99893 * 3 2 1 23 23 H 1.08998 * 109.47176 * 60.00182 * 1 2 3 24 24 H 1.09001 * 109.47069 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47226 * 299.99681 * 1 2 3 26 26 H 1.08994 * 109.47357 * 240.00035 * 2 1 3 27 27 H 1.08998 * 109.47176 * 119.99818 * 2 1 3 28 28 H 1.08998 * 109.50436 * 56.87123 * 5 3 2 29 29 H 1.08999 * 109.50231 * 296.73959 * 5 3 2 30 30 H 1.09004 * 109.47518 * 69.67521 * 7 6 5 31 31 H 1.09007 * 109.47172 * 309.67544 * 7 6 5 32 32 H 1.09001 * 109.47487 * 300.00223 * 10 8 7 33 33 H 1.08998 * 109.46915 * 60.00802 * 10 8 7 34 34 H 1.09001 * 109.47327 * 180.02562 * 10 8 7 35 35 H 1.09009 * 109.47378 * 54.99806 * 11 8 7 36 36 H 1.08998 * 109.47458 * 295.00267 * 11 8 7 37 37 H 0.97005 * 119.99656 * 359.72741 * 15 14 12 38 38 H 1.08998 * 109.50715 * 178.55088 * 20 6 5 39 39 H 1.09000 * 109.50494 * 298.64141 * 20 6 5 40 40 H 1.09000 * 109.50386 * 63.08821 * 21 20 6 41 41 H 1.08997 * 109.50433 * 183.21465 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6069 1.9817 0.8425 5 6 3.5662 1.4461 0.1209 6 7 4.0554 2.8303 0.0433 7 6 5.5137 2.8835 0.2122 8 6 5.9564 4.3398 0.3675 9 1 5.5956 4.9216 -0.4808 10 6 5.3777 4.9135 1.6624 11 6 7.4841 4.4058 0.4184 12 6 7.9240 5.8469 0.4475 13 1 7.1875 6.6367 0.4317 14 6 9.2666 6.1570 0.4942 15 7 10.1634 5.1952 0.5139 16 14 9.8121 7.9433 0.5227 17 1 9.9971 8.4266 -0.8693 18 1 8.7772 8.7662 1.1989 19 1 11.0955 8.0573 1.2609 20 6 3.6486 3.4564 -1.2231 21 6 2.1216 3.4326 -1.3305 22 8 1.6620 2.0826 -1.2218 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9970 0.8617 -0.6920 29 1 3.8565 1.0105 1.0769 30 1 5.9969 2.4481 -0.6625 31 1 5.7972 2.3208 1.1017 32 1 4.2893 4.8665 1.6262 33 1 5.7385 4.3317 2.5106 34 1 5.6927 5.9511 1.7728 35 1 7.8985 3.9172 -0.4636 36 1 7.8400 3.8990 1.3153 37 1 9.8801 4.2676 0.4995 38 1 3.9992 4.4882 -1.2482 39 1 4.0815 2.9045 -2.0575 40 1 1.6908 4.0296 -0.5267 41 1 1.8180 3.8440 -2.2931 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602437458.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:24 Heat of formation + Delta-G solvation = -72.043923 kcal Electronic energy + Delta-G solvation = -18031.668442 eV Core-core repulsion = 15331.437557 eV Total energy + Delta-G solvation = -2700.230885 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.74953 -36.78816 -34.24821 -34.07543 -32.01666 -29.99377 -27.84741 -26.40559 -24.80990 -24.03473 -22.76295 -21.40512 -20.39793 -19.07076 -16.85458 -16.51753 -16.08512 -15.08904 -14.93572 -14.87952 -13.95368 -13.83630 -13.73432 -13.58118 -13.26421 -13.17810 -12.12664 -11.89605 -11.79626 -11.73565 -11.46047 -11.28978 -11.14758 -11.09902 -10.94079 -10.65321 -10.45663 -10.29886 -10.10030 -9.75437 -9.55200 -9.41593 -8.46672 -8.29201 -8.16220 -6.32327 -4.00423 3.44769 3.48478 3.64101 3.69197 3.94725 4.57187 4.67145 4.85933 5.00354 5.04910 5.18129 5.20656 5.29739 5.38154 5.44426 5.55110 5.59871 5.66475 5.75992 5.77324 5.80159 5.88660 5.92996 6.04004 6.07490 6.14140 6.27457 6.41007 6.57572 6.86199 7.00185 7.08631 7.13979 7.24395 7.25771 7.42218 7.59156 8.27059 8.50864 8.92859 9.71168 11.08144 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.054408 B = 0.004325 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.508142 B = 6472.419693 C = 6664.295213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.094 3.906 4 H 0.065 0.935 5 C 0.023 3.977 6 N -0.533 5.533 7 C 0.060 3.940 8 C -0.074 4.074 9 H 0.057 0.943 10 C -0.121 4.121 11 C 0.014 3.986 12 C -0.593 4.593 13 H 0.050 0.950 14 C 0.012 3.988 15 N -0.916 5.916 16 Si 1.070 2.930 17 H -0.289 1.289 18 H -0.289 1.289 19 H -0.285 1.285 20 C 0.015 3.985 21 C 0.066 3.934 22 O -0.384 6.384 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.038 0.962 29 H 0.082 0.918 30 H 0.028 0.972 31 H 0.069 0.931 32 H 0.042 0.958 33 H 0.038 0.962 34 H 0.055 0.945 35 H 0.002 0.998 36 H 0.007 0.993 37 H 0.268 0.732 38 H 0.093 0.907 39 H 0.038 0.962 40 H 0.057 0.943 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.354 -7.912 -1.335 19.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C 0.036 3.964 4 H 0.083 0.917 5 C -0.106 4.106 6 N -0.257 5.257 7 C -0.067 4.067 8 C -0.093 4.093 9 H 0.075 0.925 10 C -0.179 4.179 11 C -0.024 4.024 12 C -0.631 4.631 13 H 0.068 0.932 14 C -0.191 4.191 15 N -0.553 5.553 16 Si 0.899 3.101 17 H -0.216 1.216 18 H -0.215 1.215 19 H -0.211 1.211 20 C -0.114 4.114 21 C -0.011 4.011 22 O -0.303 6.303 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.021 0.979 36 H 0.025 0.975 37 H 0.078 0.922 38 H 0.111 0.889 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.341 -6.757 -1.037 17.713 hybrid contribution -0.643 -1.331 -0.551 1.578 sum -16.984 -8.088 -1.589 18.878 Atomic orbital electron populations 1.21694 0.95153 1.01344 1.02306 1.21524 0.96769 0.94421 1.02666 1.22191 0.92989 0.93771 0.87430 0.91675 1.22786 0.95690 0.90428 1.01695 1.62255 1.14035 1.15980 1.33452 1.22353 0.84789 0.99606 0.99964 1.21088 0.98176 0.92020 0.97998 0.92454 1.21567 0.98658 1.01004 0.96645 1.19258 0.89649 0.97789 0.95677 1.22047 0.94252 0.91874 1.54969 0.93175 1.25827 0.93229 1.06043 0.94001 1.70753 1.36376 1.01070 1.47110 0.83531 0.75672 0.74241 0.76695 1.21559 1.21486 1.21073 1.22828 0.96197 1.01527 0.90802 1.22643 0.92987 0.83428 1.02002 1.87932 1.76716 1.26570 1.39078 0.91987 0.92883 0.92877 0.91291 0.90585 0.94386 0.90002 0.95347 0.91249 0.93874 0.94276 0.92593 0.97931 0.97509 0.92174 0.88928 0.94334 0.92425 0.88707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.81 37.16 0.36 -0.92 16 2 C -0.12 -1.11 5.65 -26.73 -0.15 -1.26 16 3 C 0.09 1.12 2.80 -26.68 -0.07 1.04 16 4 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 5 C 0.02 0.30 4.93 -3.71 -0.02 0.28 16 6 N -0.53 -8.16 4.18 -234.30 -0.98 -9.14 16 7 C 0.06 1.06 4.35 -3.83 -0.02 1.05 16 8 C -0.07 -1.53 2.26 -90.62 -0.20 -1.74 16 9 H 0.06 1.21 6.29 -51.93 -0.33 0.88 16 10 C -0.12 -2.40 8.89 37.16 0.33 -2.07 16 11 C 0.01 0.35 3.76 -27.88 -0.10 0.25 16 12 C -0.59 -16.87 8.41 -34.44 -0.29 -17.16 16 13 H 0.05 1.41 7.06 -52.49 -0.37 1.04 16 14 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 15 N -0.92 -28.41 13.65 55.43 0.76 -27.65 16 16 Si 1.07 25.61 29.90 -169.99 -5.08 20.53 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 C 0.01 0.21 5.44 -3.71 -0.02 0.19 16 21 C 0.07 0.82 7.01 37.21 0.26 1.08 16 22 O -0.38 -5.05 10.01 -35.23 -0.35 -5.40 16 23 H 0.06 0.60 7.82 -51.93 -0.41 0.19 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 30 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 31 H 0.07 1.22 8.04 -51.92 -0.42 0.80 16 32 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.19 6.95 -51.93 -0.36 0.83 16 35 H 0.00 0.07 8.01 -51.92 -0.42 -0.35 16 36 H 0.01 0.18 8.00 -51.93 -0.42 -0.24 16 37 H 0.27 8.28 7.22 -40.82 -0.29 7.99 16 38 H 0.09 1.39 6.28 -51.93 -0.33 1.06 16 39 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 318.89 15.07 4.81 4.81 Total: -1.00 -30.73 318.89 -8.48 -39.21 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -7.60 Total: -3.35 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -0.02 Total: -19.01 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: -0.22 Total: -36.79 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.35 Total: -5.40 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -5.08 Total: 20.53 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.73 -8.48 -39.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602437458.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.835 kcal (2) G-P(sol) polarization free energy of solvation -30.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds