Wall clock time and date at job start Sun Mar 29 2020 22:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46998 * 2 1 4 4 H 1.09003 * 109.50911 * 55.08728 * 3 2 1 5 5 C 1.53102 * 109.54253 * 175.19389 * 3 2 1 6 6 N 1.47015 * 109.25670 * 176.80894 * 5 3 2 7 7 C 1.46894 * 110.99937 * 177.61088 * 6 5 3 8 8 C 1.53000 * 109.47255 * 189.68070 * 7 6 5 9 9 H 1.09007 * 109.46792 * 304.99473 * 8 7 6 10 10 C 1.52996 * 109.47228 * 64.99471 * 8 7 6 11 11 C 1.52999 * 109.47309 * 184.99779 * 8 7 6 12 12 C 1.50702 * 109.47525 * 174.99526 * 11 8 7 13 13 H 1.08002 * 119.99441 * 0.02562 * 12 11 8 14 14 C 1.37871 * 120.00075 * 180.02562 * 12 11 8 15 15 N 1.31514 * 120.00481 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99886 * 179.73007 * 14 12 11 17 17 H 1.48502 * 109.46964 * 270.27509 * 16 14 12 18 18 H 1.48505 * 109.47036 * 30.26897 * 16 14 12 19 19 H 1.48490 * 109.47395 * 150.27411 * 16 14 12 20 20 C 1.47020 * 110.75233 * 301.38135 * 6 5 3 21 21 C 1.53100 * 109.25542 * 58.61678 * 20 6 5 22 22 O 1.43014 * 109.50795 * 294.99893 * 3 2 1 23 23 H 1.08998 * 109.47176 * 60.00182 * 1 2 3 24 24 H 1.09001 * 109.47069 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47226 * 299.99681 * 1 2 3 26 26 H 1.08994 * 109.47357 * 240.00035 * 2 1 3 27 27 H 1.08998 * 109.47176 * 119.99818 * 2 1 3 28 28 H 1.08998 * 109.50436 * 56.87123 * 5 3 2 29 29 H 1.08999 * 109.50231 * 296.73959 * 5 3 2 30 30 H 1.09004 * 109.47518 * 69.67521 * 7 6 5 31 31 H 1.09007 * 109.47172 * 309.67544 * 7 6 5 32 32 H 1.09001 * 109.47487 * 300.00223 * 10 8 7 33 33 H 1.08998 * 109.46915 * 60.00802 * 10 8 7 34 34 H 1.09001 * 109.47327 * 180.02562 * 10 8 7 35 35 H 1.09009 * 109.47378 * 54.99806 * 11 8 7 36 36 H 1.08998 * 109.47458 * 295.00267 * 11 8 7 37 37 H 0.97005 * 119.99656 * 359.72741 * 15 14 12 38 38 H 1.08998 * 109.50715 * 178.55088 * 20 6 5 39 39 H 1.09000 * 109.50494 * 298.64141 * 20 6 5 40 40 H 1.09000 * 109.50386 * 63.08821 * 21 20 6 41 41 H 1.08997 * 109.50433 * 183.21465 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6069 1.9817 0.8425 5 6 3.5662 1.4461 0.1209 6 7 4.0554 2.8303 0.0433 7 6 5.5137 2.8835 0.2122 8 6 5.9564 4.3398 0.3675 9 1 5.5956 4.9216 -0.4808 10 6 5.3777 4.9135 1.6624 11 6 7.4841 4.4058 0.4184 12 6 7.9240 5.8469 0.4475 13 1 7.1875 6.6367 0.4317 14 6 9.2666 6.1570 0.4942 15 7 10.1634 5.1952 0.5139 16 14 9.8121 7.9433 0.5227 17 1 9.9971 8.4266 -0.8693 18 1 8.7772 8.7662 1.1989 19 1 11.0955 8.0573 1.2609 20 6 3.6486 3.4564 -1.2231 21 6 2.1216 3.4326 -1.3305 22 8 1.6620 2.0826 -1.2218 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9970 0.8617 -0.6920 29 1 3.8565 1.0105 1.0769 30 1 5.9969 2.4481 -0.6625 31 1 5.7972 2.3208 1.1017 32 1 4.2893 4.8665 1.6262 33 1 5.7385 4.3317 2.5106 34 1 5.6927 5.9511 1.7728 35 1 7.8985 3.9172 -0.4636 36 1 7.8400 3.8990 1.3153 37 1 9.8801 4.2676 0.4995 38 1 3.9992 4.4882 -1.2482 39 1 4.0815 2.9045 -2.0575 40 1 1.6908 4.0296 -0.5267 41 1 1.8180 3.8440 -2.2931 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602437458.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:23 Heat of formation + Delta-G solvation = -90.951738 kcal Electronic energy + Delta-G solvation = -18032.488346 eV Core-core repulsion = 15331.437557 eV Total energy + Delta-G solvation = -2701.050789 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.83847 -38.22497 -35.96273 -34.93290 -33.94466 -30.94794 -29.25074 -28.26163 -26.27188 -25.11086 -24.53474 -22.46548 -21.47975 -20.69883 -18.92275 -17.48681 -17.29398 -16.38184 -16.33186 -15.83458 -15.65019 -15.28034 -15.12913 -14.94829 -14.58773 -14.13420 -13.65497 -13.59843 -13.12907 -13.00382 -12.86134 -12.77098 -12.50635 -12.33009 -12.06998 -11.94799 -11.90754 -11.84006 -11.59354 -11.33807 -11.27028 -10.73908 -10.53263 -10.44848 -9.42854 -8.66679 -6.35823 1.51825 1.61097 1.78586 2.56202 2.68899 2.83413 3.17666 3.69914 3.87036 3.95328 4.06095 4.09923 4.18556 4.22095 4.36023 4.39247 4.44635 4.53730 4.59463 4.71170 4.72994 4.75889 4.79103 4.88786 4.94947 4.99770 5.05142 5.10513 5.24497 5.29348 5.33569 5.44010 5.44697 5.60006 5.88325 5.96660 6.06468 6.20712 6.21847 6.60710 7.45299 8.74010 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.054408 B = 0.004325 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.508142 B = 6472.419693 C = 6664.295213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C 0.095 3.905 4 H 0.067 0.933 5 C 0.022 3.978 6 N -0.534 5.534 7 C 0.072 3.928 8 C -0.066 4.066 9 H 0.054 0.946 10 C -0.111 4.111 11 C 0.017 3.983 12 C -0.604 4.604 13 H 0.053 0.947 14 C -0.043 4.043 15 N -0.942 5.942 16 Si 1.118 2.882 17 H -0.274 1.274 18 H -0.268 1.268 19 H -0.284 1.284 20 C 0.013 3.987 21 C 0.071 3.929 22 O -0.393 6.393 23 H 0.049 0.951 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.032 0.968 29 H 0.093 0.907 30 H 0.017 0.983 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.037 0.963 34 H 0.037 0.963 35 H -0.020 1.020 36 H -0.012 1.012 37 H 0.254 0.746 38 H 0.084 0.916 39 H 0.029 0.971 40 H 0.063 0.937 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.110 -7.558 -1.091 20.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C 0.038 3.962 4 H 0.085 0.915 5 C -0.107 4.107 6 N -0.258 5.258 7 C -0.056 4.056 8 C -0.085 4.085 9 H 0.072 0.928 10 C -0.168 4.168 11 C -0.021 4.021 12 C -0.642 4.642 13 H 0.071 0.929 14 C -0.240 4.240 15 N -0.580 5.580 16 Si 0.940 3.060 17 H -0.199 1.199 18 H -0.192 1.192 19 H -0.210 1.210 20 C -0.115 4.115 21 C -0.006 4.006 22 O -0.313 6.313 23 H 0.069 0.931 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.111 0.889 28 H 0.050 0.950 29 H 0.111 0.889 30 H 0.035 0.965 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.056 0.944 35 H -0.002 1.002 36 H 0.006 0.994 37 H 0.063 0.937 38 H 0.102 0.898 39 H 0.048 0.952 40 H 0.081 0.919 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -18.130 -6.421 -0.799 19.250 hybrid contribution -0.123 -1.494 -0.637 1.629 sum -18.253 -7.915 -1.437 19.947 Atomic orbital electron populations 1.21667 0.94387 1.02206 1.01935 1.21548 0.97381 0.92878 1.03296 1.22297 0.91758 0.95129 0.87066 0.91510 1.22896 0.96762 0.88914 1.02079 1.62229 1.11908 1.17614 1.34061 1.22072 0.86679 0.97196 0.99626 1.20913 0.94617 0.94325 0.98604 0.92787 1.21452 1.00015 0.99577 0.95741 1.19189 0.93207 0.96127 0.93568 1.22438 0.94534 0.93171 1.54032 0.92901 1.27413 0.93876 1.09631 0.93033 1.70893 1.36949 1.00811 1.49371 0.82919 0.75811 0.69575 0.77709 1.19918 1.19242 1.20972 1.22879 0.97902 1.00721 0.90011 1.22693 0.91097 0.83397 1.03415 1.87938 1.76664 1.26914 1.39758 0.93147 0.91452 0.92428 0.91697 0.88939 0.94980 0.88904 0.96490 0.91015 0.91447 0.94430 0.94380 1.00222 0.99417 0.93690 0.89756 0.95233 0.91884 0.86682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.81 71.98 0.71 -1.47 16 2 C -0.11 -1.91 5.65 30.59 0.17 -1.73 16 3 C 0.10 2.06 2.80 30.63 0.09 2.15 16 4 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 5 C 0.02 0.53 4.93 86.32 0.43 0.96 16 6 N -0.53 -15.69 4.18 -895.19 -3.74 -19.44 16 7 C 0.07 2.54 4.35 86.30 0.38 2.91 16 8 C -0.07 -2.73 2.26 -10.80 -0.02 -2.75 16 9 H 0.05 2.28 6.29 -2.38 -0.01 2.26 16 10 C -0.11 -4.27 8.89 71.98 0.64 -3.63 16 11 C 0.02 0.88 3.76 29.85 0.11 0.99 16 12 C -0.60 -34.69 8.41 25.60 0.22 -34.47 16 13 H 0.05 2.95 7.06 -2.91 -0.02 2.93 16 14 C -0.04 -2.52 5.46 84.65 0.46 -2.06 16 15 N -0.94 -59.54 13.65 21.45 0.29 -59.24 16 16 Si 1.12 51.00 29.90 68.60 2.05 53.05 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 18 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 20 C 0.01 0.36 5.44 86.31 0.47 0.83 16 21 C 0.07 1.60 7.01 72.02 0.50 2.10 16 22 O -0.39 -9.58 10.01 -148.98 -1.49 -11.07 16 23 H 0.05 0.88 7.82 -2.39 -0.02 0.86 16 24 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.09 2.09 8.09 -2.39 -0.02 2.07 16 30 H 0.02 0.63 8.12 -2.38 -0.02 0.61 16 31 H 0.07 2.48 8.04 -2.38 -0.02 2.46 16 32 H 0.07 2.26 7.75 -2.39 -0.02 2.24 16 33 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.04 1.58 6.95 -2.39 -0.02 1.56 16 35 H -0.02 -1.16 8.01 -2.38 -0.02 -1.18 16 36 H -0.01 -0.70 8.00 -2.39 -0.02 -0.72 16 37 H 0.25 16.27 7.22 -92.70 -0.67 15.60 16 38 H 0.08 2.46 6.28 -2.39 -0.01 2.45 16 39 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -65.80 318.89 2.31 -63.49 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: 1.06 Total: 9.38 kcal Atomic # 6 Polarization: -40.32 SS G_CDS: 4.14 Total: -36.17 kcal Atomic # 7 Polarization: -75.23 SS G_CDS: -3.45 Total: -78.68 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -1.49 Total: -11.07 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 2.05 Total: 53.05 kcal Total: -65.80 2.31 -63.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602437458.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.459 kcal (2) G-P(sol) polarization free energy of solvation -65.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds