Wall clock time and date at job start Sun Mar 29 2020 22:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47197 * 2 1 4 4 H 1.09004 * 109.47208 * 54.99507 * 3 2 1 5 5 C 1.53000 * 109.46813 * 295.00158 * 3 2 1 6 6 C 1.52991 * 109.47133 * 175.00088 * 3 2 1 7 7 H 1.09010 * 109.47269 * 59.99980 * 6 3 2 8 8 C 1.53001 * 109.46999 * 179.97438 * 6 3 2 9 9 N 1.46506 * 109.46856 * 179.50913 * 8 6 3 10 10 C 1.36931 * 119.99981 * 83.92559 * 9 8 6 11 11 H 1.08003 * 120.00387 * 331.91486 * 10 9 8 12 12 C 1.38813 * 120.00159 * 151.91455 * 10 9 8 13 13 N 1.31623 * 119.99801 * 8.86699 * 12 10 9 14 14 Si 1.86801 * 120.00384 * 188.86294 * 12 10 9 15 15 H 1.48495 * 109.47323 * 180.02562 * 14 12 10 16 16 H 1.48507 * 109.47123 * 300.00404 * 14 12 10 17 17 H 1.48503 * 109.46876 * 60.00102 * 14 12 10 18 18 C 1.46500 * 119.99716 * 263.92012 * 9 8 6 19 19 C 1.53001 * 117.50154 * 15.18584 * 18 9 8 20 20 C 1.52999 * 117.50301 * 306.56157 * 18 9 8 21 21 O 1.42900 * 109.47249 * 299.99775 * 6 3 2 22 22 C 1.42899 * 113.99923 * 139.04100 * 21 6 3 23 23 H 1.09002 * 109.47296 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46862 * 299.99908 * 1 2 3 25 25 H 1.08999 * 109.47587 * 60.00294 * 1 2 3 26 26 H 1.08993 * 109.46697 * 239.99764 * 2 1 3 27 27 H 1.09000 * 109.46914 * 120.00038 * 2 1 3 28 28 H 1.09002 * 109.47112 * 180.02562 * 5 3 2 29 29 H 1.09003 * 109.47317 * 300.00098 * 5 3 2 30 30 H 1.08998 * 109.47546 * 59.99896 * 5 3 2 31 31 H 1.08998 * 109.47115 * 59.51221 * 8 6 3 32 32 H 1.08999 * 109.47211 * 299.50720 * 8 6 3 33 33 H 0.97003 * 120.00129 * 174.99133 * 13 12 10 34 34 H 1.09002 * 115.54748 * 160.89618 * 18 9 8 35 35 H 1.08997 * 117.49662 * 359.97438 * 19 18 9 36 36 H 1.08999 * 117.49630 * 145.01995 * 19 18 9 37 37 H 1.09001 * 117.50092 * 214.98089 * 20 18 9 38 38 H 1.09003 * 117.49533 * 359.97438 * 20 18 9 39 39 H 1.09007 * 109.47039 * 183.25981 * 22 21 6 40 40 H 1.09002 * 109.47170 * 303.25780 * 22 21 6 41 41 H 1.09000 * 109.47458 * 63.26189 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4443 0.1257 7 1 3.9994 0.9052 -0.7162 8 6 4.0748 2.8868 0.1250 9 7 5.5339 2.8889 0.2572 10 6 6.3219 2.7263 -0.8508 11 1 5.9531 2.1681 -1.6987 12 6 7.5949 3.2788 -0.8843 13 7 8.1122 3.8063 0.2050 14 14 8.5739 3.2737 -2.4752 15 1 9.8924 3.9175 -2.2472 16 1 8.7785 1.8736 -2.9260 17 1 7.8290 4.0253 -3.5171 18 6 6.1498 3.0650 1.5747 19 6 5.2545 2.8866 2.8026 20 6 5.7254 4.2843 2.3957 21 8 3.9429 0.8055 1.3467 22 6 5.0808 -0.0505 1.2267 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.9989 3.1540 -1.3076 29 1 2.0698 1.5874 -2.1492 30 1 0.5489 2.1252 -1.3970 31 1 3.6335 3.4286 0.9616 32 1 3.7940 3.3711 -0.8102 33 1 9.0278 4.1267 0.2012 34 1 7.1869 2.7398 1.6561 35 1 4.2073 2.6386 2.6301 36 1 5.7027 2.4438 3.6921 37 1 6.4832 4.7610 3.0175 38 1 4.9882 4.9558 1.9553 39 1 5.2684 -0.5416 2.1817 40 1 4.8899 -0.8037 0.4622 41 1 5.9521 0.5406 0.9449 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602447178.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:20 Heat of formation + Delta-G solvation = -8.872358 kcal Electronic energy + Delta-G solvation = -19040.043360 eV Core-core repulsion = 16342.551800 eV Total energy + Delta-G solvation = -2697.491560 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.56932 -36.31003 -35.12250 -32.94695 -31.48300 -29.72438 -27.24544 -25.49387 -24.69926 -23.52266 -21.43196 -20.99682 -19.60296 -19.08581 -16.94016 -15.83678 -15.30735 -14.77615 -14.52893 -14.37780 -14.13414 -13.38295 -13.28680 -12.83087 -12.67639 -12.21521 -12.01240 -11.61408 -11.48550 -11.37411 -11.16597 -10.89073 -10.75292 -10.57231 -10.40788 -10.33878 -10.25925 -10.11824 -9.99377 -9.65718 -9.63606 -8.86621 -8.57356 -8.38393 -6.47755 -5.72714 -3.27200 3.35368 3.41911 3.42244 4.43320 4.50182 5.02147 5.17458 5.29203 5.32611 5.49989 5.57675 5.63489 5.72633 5.79192 5.91489 5.99854 6.05355 6.12282 6.17178 6.21406 6.26496 6.34440 6.42231 6.48076 6.52520 6.58540 6.62311 6.67432 6.73452 6.78721 6.86753 6.93949 7.11641 7.40600 7.70855 7.92812 8.05169 8.42235 9.26441 9.84263 10.37171 11.25644 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023971 B = 0.008077 C = 0.007022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.818388 B = 3465.701128 C = 3986.414954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.091 4.091 4 H 0.071 0.929 5 C -0.147 4.147 6 C 0.076 3.924 7 H 0.054 0.946 8 C 0.128 3.872 9 N -0.562 5.562 10 C -0.263 4.263 11 H 0.068 0.932 12 C 0.012 3.988 13 N -0.897 5.897 14 Si 0.903 3.097 15 H -0.290 1.290 16 H -0.284 1.284 17 H -0.283 1.283 18 C 0.203 3.797 19 C -0.237 4.237 20 C -0.225 4.225 21 O -0.376 6.376 22 C 0.039 3.961 23 H 0.047 0.953 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.255 0.745 34 H 0.134 0.866 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.020 0.980 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.963 -5.662 0.272 11.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.110 4.110 4 H 0.089 0.911 5 C -0.204 4.204 6 C 0.015 3.985 7 H 0.072 0.928 8 C 0.001 3.999 9 N -0.279 5.279 10 C -0.392 4.392 11 H 0.086 0.914 12 C -0.187 4.187 13 N -0.540 5.540 14 Si 0.733 3.267 15 H -0.216 1.216 16 H -0.211 1.211 17 H -0.210 1.210 18 C 0.094 3.906 19 C -0.277 4.277 20 C -0.265 4.265 21 O -0.295 6.295 22 C -0.058 4.058 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.151 0.849 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.039 0.961 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.886 -5.492 0.395 11.316 hybrid contribution 0.706 0.108 -0.955 1.193 sum -9.180 -5.384 -0.560 10.657 Atomic orbital electron populations 1.21818 0.96553 1.00883 1.01553 1.21497 0.95014 0.96890 1.01950 1.21278 0.95546 0.96037 0.98174 0.91098 1.21890 1.00557 1.01038 0.96922 1.22858 0.92123 0.96566 0.86917 0.92784 1.21343 0.85861 0.93346 0.99377 1.43451 0.99094 1.82380 1.02934 1.19072 0.97572 1.28016 0.94540 0.91419 1.25173 0.98918 0.97607 0.97037 1.69927 1.14184 1.44058 1.25844 0.86366 0.79098 0.77661 0.83578 1.21580 1.21060 1.20968 1.21095 0.95291 0.94690 0.79482 1.23560 1.01677 1.00549 1.01872 1.23119 1.03523 0.91820 1.08060 1.87724 1.47360 1.62157 1.32210 1.22719 0.90538 0.92829 0.99687 0.93411 0.92974 0.92821 0.92746 0.91436 0.92028 0.92848 0.92803 0.93396 0.93051 0.93441 0.84909 0.89201 0.91536 0.91229 0.91601 0.91675 0.96135 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.67 37.16 0.36 -1.31 16 2 C -0.12 -1.54 5.33 -26.73 -0.14 -1.68 16 3 C -0.09 -1.35 2.19 -90.62 -0.20 -1.54 16 4 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 5 C -0.15 -1.96 8.60 37.16 0.32 -1.64 16 6 C 0.08 1.37 2.03 -26.74 -0.05 1.32 16 7 H 0.05 1.05 7.64 -51.92 -0.40 0.65 16 8 C 0.13 2.65 4.47 -4.04 -0.02 2.63 16 9 N -0.56 -13.63 1.87 -165.66 -0.31 -13.94 16 10 C -0.26 -6.91 9.52 -15.06 -0.14 -7.05 16 11 H 0.07 1.75 7.84 -52.48 -0.41 1.33 16 12 C 0.01 0.32 5.44 -17.43 -0.09 0.22 16 13 N -0.90 -25.09 10.20 55.49 0.57 -24.52 16 14 Si 0.90 21.24 29.57 -169.99 -5.03 16.22 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 C 0.20 4.93 3.64 -67.93 -0.25 4.69 16 19 C -0.24 -5.06 8.60 -26.73 -0.23 -5.29 16 20 C -0.22 -5.16 10.00 -26.73 -0.27 -5.43 16 21 O -0.38 -7.06 6.95 -35.23 -0.24 -7.30 16 22 C 0.04 0.70 10.27 101.05 1.04 1.74 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.56 6.57 -51.93 -0.34 0.22 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.96 7.54 -51.93 -0.39 0.57 16 28 H 0.06 0.86 6.44 -51.93 -0.33 0.53 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.62 6.56 -51.93 -0.34 0.27 16 31 H 0.05 1.00 5.98 -51.93 -0.31 0.69 16 32 H 0.05 1.06 6.40 -51.93 -0.33 0.73 16 33 H 0.25 6.97 8.32 -40.82 -0.34 6.63 16 34 H 0.13 3.60 6.27 -51.93 -0.33 3.28 16 35 H 0.09 1.91 5.25 -51.93 -0.27 1.64 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 38 H 0.07 1.53 7.84 -51.93 -0.41 1.12 16 39 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 40 H 0.02 0.34 8.05 -51.93 -0.42 -0.08 16 41 H 0.07 1.44 6.16 -51.93 -0.32 1.12 16 LS Contribution 311.65 15.07 4.70 4.70 Total: -1.00 -27.21 311.65 -7.12 -34.32 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -7.12 Total: 3.87 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: 0.32 Total: -13.34 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.26 Total: -38.47 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.24 Total: -7.30 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.21 -7.12 -34.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602447178.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.451 kcal (2) G-P(sol) polarization free energy of solvation -27.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds