Wall clock time and date at job start Sun Mar 29 2020 22:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47197 * 2 1 4 4 H 1.09004 * 109.47208 * 54.99507 * 3 2 1 5 5 C 1.53000 * 109.46813 * 295.00158 * 3 2 1 6 6 C 1.52991 * 109.47133 * 175.00088 * 3 2 1 7 7 H 1.09010 * 109.47269 * 59.99980 * 6 3 2 8 8 C 1.53001 * 109.46999 * 179.97438 * 6 3 2 9 9 N 1.46506 * 109.46856 * 179.50913 * 8 6 3 10 10 C 1.36931 * 119.99981 * 83.92559 * 9 8 6 11 11 H 1.08003 * 120.00387 * 331.91486 * 10 9 8 12 12 C 1.38813 * 120.00159 * 151.91455 * 10 9 8 13 13 N 1.31623 * 119.99801 * 8.86699 * 12 10 9 14 14 Si 1.86801 * 120.00384 * 188.86294 * 12 10 9 15 15 H 1.48495 * 109.47323 * 180.02562 * 14 12 10 16 16 H 1.48507 * 109.47123 * 300.00404 * 14 12 10 17 17 H 1.48503 * 109.46876 * 60.00102 * 14 12 10 18 18 C 1.46500 * 119.99716 * 263.92012 * 9 8 6 19 19 C 1.53001 * 117.50154 * 15.18584 * 18 9 8 20 20 C 1.52999 * 117.50301 * 306.56157 * 18 9 8 21 21 O 1.42900 * 109.47249 * 299.99775 * 6 3 2 22 22 C 1.42899 * 113.99923 * 139.04100 * 21 6 3 23 23 H 1.09002 * 109.47296 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46862 * 299.99908 * 1 2 3 25 25 H 1.08999 * 109.47587 * 60.00294 * 1 2 3 26 26 H 1.08993 * 109.46697 * 239.99764 * 2 1 3 27 27 H 1.09000 * 109.46914 * 120.00038 * 2 1 3 28 28 H 1.09002 * 109.47112 * 180.02562 * 5 3 2 29 29 H 1.09003 * 109.47317 * 300.00098 * 5 3 2 30 30 H 1.08998 * 109.47546 * 59.99896 * 5 3 2 31 31 H 1.08998 * 109.47115 * 59.51221 * 8 6 3 32 32 H 1.08999 * 109.47211 * 299.50720 * 8 6 3 33 33 H 0.97003 * 120.00129 * 174.99133 * 13 12 10 34 34 H 1.09002 * 115.54748 * 160.89618 * 18 9 8 35 35 H 1.08997 * 117.49662 * 359.97438 * 19 18 9 36 36 H 1.08999 * 117.49630 * 145.01995 * 19 18 9 37 37 H 1.09001 * 117.50092 * 214.98089 * 20 18 9 38 38 H 1.09003 * 117.49533 * 359.97438 * 20 18 9 39 39 H 1.09007 * 109.47039 * 183.25981 * 22 21 6 40 40 H 1.09002 * 109.47170 * 303.25780 * 22 21 6 41 41 H 1.09000 * 109.47458 * 63.26189 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4443 0.1257 7 1 3.9994 0.9052 -0.7162 8 6 4.0748 2.8868 0.1250 9 7 5.5339 2.8889 0.2572 10 6 6.3219 2.7263 -0.8508 11 1 5.9531 2.1681 -1.6987 12 6 7.5949 3.2788 -0.8843 13 7 8.1122 3.8063 0.2050 14 14 8.5739 3.2737 -2.4752 15 1 9.8924 3.9175 -2.2472 16 1 8.7785 1.8736 -2.9260 17 1 7.8290 4.0253 -3.5171 18 6 6.1498 3.0650 1.5747 19 6 5.2545 2.8866 2.8026 20 6 5.7254 4.2843 2.3957 21 8 3.9429 0.8055 1.3467 22 6 5.0808 -0.0505 1.2267 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.9989 3.1540 -1.3076 29 1 2.0698 1.5874 -2.1492 30 1 0.5489 2.1252 -1.3970 31 1 3.6335 3.4286 0.9616 32 1 3.7940 3.3711 -0.8102 33 1 9.0278 4.1267 0.2012 34 1 7.1869 2.7398 1.6561 35 1 4.2073 2.6386 2.6301 36 1 5.7027 2.4438 3.6921 37 1 6.4832 4.7610 3.0175 38 1 4.9882 4.9558 1.9553 39 1 5.2684 -0.5416 2.1817 40 1 4.8899 -0.8037 0.4622 41 1 5.9521 0.5406 0.9449 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602447178.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:19 Heat of formation + Delta-G solvation = -21.964900 kcal Electronic energy + Delta-G solvation = -19040.611095 eV Core-core repulsion = 16342.551800 eV Total energy + Delta-G solvation = -2698.059295 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.09581 -38.00513 -36.40872 -34.86592 -33.18260 -31.11343 -28.65144 -27.13183 -26.00461 -25.26933 -22.86550 -22.82033 -20.98815 -20.80420 -18.81232 -17.33327 -16.98442 -16.34404 -16.25177 -15.93395 -15.50159 -15.07516 -14.55425 -14.38364 -14.07953 -13.45500 -13.35080 -13.26731 -13.08287 -12.74665 -12.64612 -12.49115 -12.40157 -12.12345 -12.08625 -11.98476 -11.75265 -11.59362 -11.37426 -11.32175 -11.18863 -10.74731 -10.38172 -10.16065 -8.39500 -7.74672 -5.30984 1.47103 1.49787 1.55423 2.49501 3.08299 3.28113 3.54311 3.67945 3.99035 4.11976 4.23567 4.40189 4.54655 4.61107 4.63047 4.65446 4.72437 4.74939 4.78468 4.83097 4.85877 4.92273 4.96657 5.07172 5.13992 5.17496 5.19733 5.23776 5.30776 5.31140 5.38727 5.53946 5.59630 5.60872 5.63009 5.93700 6.41104 6.56649 7.23846 7.91330 8.39328 9.20936 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023971 B = 0.008077 C = 0.007022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.818388 B = 3465.701128 C = 3986.414954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C -0.085 4.085 4 H 0.070 0.930 5 C -0.144 4.144 6 C 0.085 3.915 7 H 0.040 0.960 8 C 0.128 3.872 9 N -0.573 5.573 10 C -0.266 4.266 11 H 0.069 0.931 12 C -0.039 4.039 13 N -0.923 5.923 14 Si 0.963 3.037 15 H -0.295 1.295 16 H -0.277 1.277 17 H -0.281 1.281 18 C 0.187 3.813 19 C -0.202 4.202 20 C -0.227 4.227 21 O -0.381 6.381 22 C 0.044 3.956 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.249 0.751 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.085 0.915 40 H 0.033 0.967 41 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.640 -6.520 -0.048 13.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.149 4.149 3 C -0.104 4.104 4 H 0.088 0.912 5 C -0.201 4.201 6 C 0.024 3.976 7 H 0.058 0.942 8 C 0.002 3.998 9 N -0.291 5.291 10 C -0.395 4.395 11 H 0.086 0.914 12 C -0.235 4.235 13 N -0.568 5.568 14 Si 0.792 3.208 15 H -0.222 1.222 16 H -0.203 1.203 17 H -0.207 1.207 18 C 0.079 3.921 19 C -0.241 4.241 20 C -0.268 4.268 21 O -0.300 6.300 22 C -0.053 4.053 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.052 0.948 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -11.594 -6.363 0.072 13.226 hybrid contribution 1.205 0.353 -0.830 1.505 sum -10.390 -6.010 -0.758 12.027 Atomic orbital electron populations 1.21778 0.94523 1.01932 1.02111 1.21441 0.96735 0.95327 1.01422 1.21242 0.92741 0.97511 0.98948 0.91189 1.21871 1.02131 1.00125 0.95953 1.22729 0.94347 0.94255 0.86231 0.94186 1.21469 0.83913 0.95230 0.99156 1.43550 1.00328 1.82714 1.02479 1.19313 0.97915 1.27323 0.94999 0.91368 1.25827 1.00113 0.98061 0.99529 1.70119 1.14022 1.45343 1.27305 0.85411 0.77393 0.77727 0.80267 1.22175 1.20298 1.20731 1.20800 0.94626 0.96056 0.80664 1.23447 1.01237 0.98739 1.00683 1.23087 1.03501 0.92206 1.07984 1.87712 1.47336 1.62315 1.32596 1.22665 0.88970 0.92446 1.01196 0.92197 0.92770 0.91888 0.92746 0.92530 0.93017 0.92956 0.90372 0.93614 0.93179 0.94158 0.88052 0.88745 0.89980 0.91233 0.92126 0.89663 0.94827 0.94881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.67 71.98 0.70 -2.08 16 2 C -0.11 -2.70 5.33 30.60 0.16 -2.54 16 3 C -0.09 -2.36 2.19 -10.80 -0.02 -2.38 16 4 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 5 C -0.14 -3.53 8.60 71.98 0.62 -2.91 16 6 C 0.08 2.98 2.03 30.59 0.06 3.04 16 7 H 0.04 1.53 7.64 -2.38 -0.02 1.51 16 8 C 0.13 5.28 4.47 86.38 0.39 5.67 16 9 N -0.57 -28.06 1.87 -678.02 -1.27 -29.33 16 10 C -0.27 -14.12 9.52 84.03 0.80 -13.32 16 11 H 0.07 3.54 7.84 -2.91 -0.02 3.51 16 12 C -0.04 -2.13 5.44 84.86 0.46 -1.67 16 13 N -0.92 -52.84 10.20 21.65 0.22 -52.62 16 14 Si 0.96 44.14 29.57 68.60 2.03 46.16 16 15 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 16 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 18 C 0.19 9.20 3.64 44.99 0.16 9.36 16 19 C -0.20 -8.41 8.60 30.59 0.26 -8.15 16 20 C -0.23 -10.42 10.00 30.59 0.31 -10.12 16 21 O -0.38 -13.84 6.95 -148.98 -1.04 -14.87 16 22 C 0.04 1.55 10.27 113.37 1.16 2.71 16 23 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 25 H 0.06 1.08 6.57 -2.39 -0.02 1.06 16 26 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 1.49 7.54 -2.39 -0.02 1.48 16 28 H 0.05 1.37 6.44 -2.39 -0.02 1.35 16 29 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.08 1.54 6.56 -2.39 -0.02 1.53 16 31 H 0.05 1.89 5.98 -2.39 -0.01 1.87 16 32 H 0.05 2.06 6.40 -2.39 -0.02 2.04 16 33 H 0.25 13.95 8.32 -92.71 -0.77 13.18 16 34 H 0.10 5.67 6.27 -2.39 -0.01 5.66 16 35 H 0.09 3.87 5.25 -2.39 -0.01 3.86 16 36 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 37 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 38 H 0.06 2.81 7.84 -2.39 -0.02 2.80 16 39 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 40 H 0.03 1.08 8.05 -2.39 -0.02 1.06 16 41 H 0.03 1.40 6.16 -2.39 -0.01 1.39 16 Total: -1.00 -57.85 311.65 5.98 -51.86 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.98 Total: 21.16 kcal Atomic # 6 Polarization: -27.43 SS G_CDS: 5.06 Total: -22.37 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -1.05 Total: -81.95 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -1.04 Total: -14.87 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -57.85 5.98 -51.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602447178.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.898 kcal (2) G-P(sol) polarization free energy of solvation -57.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds